Works matching IS 08873585 AND DT 2006 AND VI 63 AND IP 3

Results: 30

Interaction between mammalian glyceraldehyde-3-phosphate dehydrogenase and L-lactate dehydrogenase from heart and muscle.

Published in:

Proteins, 2006, v. 63, n. 3, p. 501, doi. 10.1002/prot.20862

By:

Svedružić, Željko M.;
Spivey, H. Olin

Publication type:

Article

Native-specific stabilization of flavodoxin by the FMN cofactor: Structural and thermodynamical explanation.

Published in:

Proteins, 2006, v. 63, n. 3, p. 581, doi. 10.1002/prot.20855

By:

Campos, L. A.;
Sancho, J.

Publication type:

Article

RIP death domain structural interactions implicated in TNF-mediated proliferation and survival.

Published in:

Proteins, 2006, v. 63, n. 3, p. 413, doi. 10.1002/prot.20895

By:

Thakar, Juilee;
Schleinkofer, Karin;
Borner, Christoph;
Dandekar, Thomas

Publication type:

Article

Proposed structural models of the prothrombinase (FXa-FVa) complex.

Published in:

Proteins, 2006, v. 63, n. 3, p. 440, doi. 10.1002/prot.20848

By:

Autin, Ludovic;
Steen, Mårten;
Dahlbäck, Björn;
Villoutreix, Bruno O.

Publication type:

Article

TASSER-based refinement of NMR structures.

Published in:

Proteins, 2006, v. 63, n. 3, p. 451, doi. 10.1002/prot.20902

By:

Lee, Seung Yup;
Zhang, Yang;
Skolnick, Jeffrey

Publication type:

Article

Chemometric tools for classification and elucidation of protein secondary structure from infrared and circular dichroism spectroscopic measurements.

Published in:

Proteins, 2006, v. 63, n. 3, p. 527, doi. 10.1002/prot.20890

By:

Navea, Susana;
Tauler, Romá;
Goormaghtigh, Erik;
de Juan, Anna

Publication type:

Article

Two-stage support vector regression approach for predicting accessible surface areas of amino acids.

Published in:

Proteins, 2006, v. 63, n. 3, p. 542, doi. 10.1002/prot.20883

By:

Nguyen, Minh N.;
Rajapakse, Jagath C.

Publication type:

Article

Evaluation of different biological data and computational classification methods for use in protein interaction prediction.

Published in:

Proteins, 2006, v. 63, n. 3, p. 490, doi. 10.1002/prot.20865

By:

Qi, Yanjun;
Bar-Joseph, Ziv;
Klein-Seetharaman, Judith

Publication type:

Article

Differentiation-dependent expression of hypothetical proteins in the neuroblastoma cell line N1E-115.

Published in:

Proteins, 2006, v. 63, n. 3, p. 671, doi. 10.1002/prot.20807

By:

Oh, Ji-eun;
Karlmark, Karlin Raja;
Shin, Jooho;
Hengstschläger, Markus;
Lubec, Gert

Publication type:

Article

Novel conserved hydrolase domain in the CLCA family of alleged calcium-activated chloride channels.

Published in:

Proteins, 2006, v. 63, n. 3, p. 424, doi. 10.1002/prot.20887

By:

Pawłowski, Krzysztof;
Lepistö, Matti;
Meinander, Nina;
Sivars, Ulf;
Varga, Mikael;
Wieslander, Elisabet

Publication type:

Article

Structural and thermodynamic consequences of removal of a conserved disulfide bond from equine β-lactoglobulin.

Published in:

Proteins, 2006, v. 63, n. 3, p. 595, doi. 10.1002/prot.20905

By:

Yamada, Yoshiteru;
Nakagawa, Kanako;
Yajima, Takeo;
Saito, Keiko;
Tokushima, Akihito;
Fujiwara, Kazuo;
Ikeguchi, Masamichi

Publication type:

Article

Predicting protease types by hybridizing gene ontology and pseudo amino acid composition.

Published in:

Proteins, 2006, v. 63, n. 3, p. 681, doi. 10.1002/prot.20898

By:

Zhou, Guo-Ping;
Cai, Yu-Dong

Publication type:

Article

The evolution of ATPase activity in SMC proteins.

Published in:

Proteins, 2006, v. 63, n. 3, p. 685, doi. 10.1002/prot.20795

By:

Cobbe, Neville;
Heck, Margarete M.S.

Publication type:

Article

Molecular modeling and inhibitory activity of cowpea cystatin against bean bruchid pests.

Published in:

Proteins, 2006, v. 63, n. 3, p. 662, doi. 10.1002/prot.20901

By:

Aguiar, Juliana M.;
Franco, Octávio L.;
Rigden, Daniel J.;
Bloch, Carlos;
Monteiro, Ana C.S.;
Flores, Victor M.Q.;
Jacinto, Tânia;
Xavier-Filho, José;
Oliveira, Antonia E.A.;
Grossi-de-Sá, Maria F.;
Fernandes, Kátia V.S.

Publication type:

Article

Involvement of disulfide bonds and histidine 172 in a unique β-sheet to α-helix transition of α<sub>1</sub>-acid glycoprotein at the biomembrane interface.

Published in:

Proteins, 2006, v. 63, n. 3, p. 611, doi. 10.1002/prot.20923

By:

Nishi, Koji;
Komine, Yoshio;
Fukunaga, Naoko;
Maruyama, Toru;
Suenaga, Ayaka;
Otagiri, Masaki

Publication type:

Article

Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1.

Published in:

Proteins, 2006, v. 63, n. 3, p. 711, doi. 10.1002/prot.20858

By:

Matsumura, Hiroyoshi;
Takahashi, Hitomi;
Inoue, Tsuyoshi;
Yamamoto, Takahiko;
Hashimoto, Hiroshi;
Nishioka, Motomu;
Fujiwara, Shinsuke;
Takagi, Masahiro;
Imanaka, Tadayuki;
Kai, Yasushi

Publication type:

Article

Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes.

Published in:

Proteins, 2006, v. 63, n. 3, p. 512, doi. 10.1002/prot.20831

By:

Bordner, Andrew J.;
Abagyan, Ruben

Publication type:

Article

Functional evolution within a protein superfamily.

Published in:

Proteins, 2006, v. 63, n. 3, p. 697, doi. 10.1002/prot.20871

By:

Yi, Zhengping;
Vitek, Olga;
Qasim, M.A.;
Lu, Stephen M.;
Lu, Wuyuan;
Ranjbar, Michael;
Li, Jiangtian;
Laskowski, Michael C.;
Bailey-Kellogg, Chris;
Laskowski, Michael

Publication type:

Article

WHISCY: What information does surface conservation yield? Application to data-driven docking.

Published in:

Proteins, 2006, v. 63, n. 3, p. 479, doi. 10.1002/prot.20842

By:

de Vries, Sjoerd J.;
van Dijk, Aalt D.J.;
Bonvin, Alexandre M.J.J.

Publication type:

Article

3D model of a substrate-bound SARS chymotrypsin-like cysteine proteinase predicted by multiple molecular dynamics simulations: Catalytic efficiency regulated by substrate binding.

Published in:

Proteins, 2006, v. 63, n. 3, p. 716, doi. 10.1002/prot.20909

By:

Pang, Yuan-Ping

Publication type:

Article

Multiple mapping method: A novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.

Published in:

Proteins, 2006, v. 63, n. 3, p. 644, doi. 10.1002/prot.20835

By:

Rai, Brajesh K.;
Fiser, András

Publication type:

Article

Dependence of folding dynamics and structural stability on the location of a hydrophobic pair in β-hairpins.

Published in:

Proteins, 2006, v. 63, n. 3, p. 555, doi. 10.1002/prot.20846

By:

Imamura, Hideo;
Chen, Jeff Z. Y.

Publication type:

Article

Hydrogen bonding is the prime determinant of carboxyl p K<sub>a</sub> values at the N-termini of α-helices.

Published in:

Proteins, 2006, v. 63, n. 3, p. 621, doi. 10.1002/prot.20879

By:

Porter, Melissa A.;
Hall, Jordan R.;
Locke, James C.;
Jensen, Jan H.;
Molina, Pablo A.

Publication type:

Article

Amino acid sequence predicts folding rate for middle-size two-state proteins.

Published in:

Proteins, 2006, v. 63, n. 3, p. 551, doi. 10.1002/prot.20911

By:

Huang, Ji-Tao;
Tian, Jing

Publication type:

Article

The fragment transformation method to detect the protein structural motifs.

Published in:

Proteins, 2006, v. 63, n. 3, p. 636, doi. 10.1002/prot.20904

By:

Lu, Chih-Hao;
Lin, Yeong-Shin;
Chen, Yu-Ching;
Yu, Chin-Sheng;
Chang, Shi-Yu;
Hwang, Jenn-Kang

Publication type:

Article

Stop-flow kinetics studies of the interaction of surfactant, sodium dodecyl sulfate, with acid-denatured cytochrome c.

Published in:

Proteins, 2006, v. 63, n. 3, p. 571, doi. 10.1002/prot.20926

By:

Xu, Qi;
Keiderling, Timothy A.

Publication type:

Article

Predicting the three-dimensional structure of human P-glycoprotein in absence of ATP by computational techniques embodying crosslinking data: Insight into the mechanism of ligand migration and binding sites.

Published in:

Proteins, 2006, v. 63, n. 3, p. 466, doi. 10.1002/prot.20892

By:

Vandevuer, Stéphane;
Van Bambeke, Françoise;
Tulkens, Paul M.;
Prévost, Martine

Publication type:

Article

Benchmarking of dimeric threading and structure refinement.

Published in:

Proteins, 2006, v. 63, n. 3, p. 457, doi. 10.1002/prot.20878

By:

Grimm, Vera;
Zhang, Yang;
Skolnick, Jeffrey

Publication type:

Article

Effect of a mutation on the structure and dynamics of an α-helical antifreeze protein in water and ice.

Published in:

Proteins, 2006, v. 63, n. 3, p. 603, doi. 10.1002/prot.20889

By:

Graether, Steffen P.;
Slupsky, Carolyn M.;
Sykes, Brian D.

Publication type:

Article

Commentary on: 'Assembly of a tetrameric α-helical bundle: Computer simulations on an intermediate-resolution protein model' [Proteins 2001;44:376-391].

Published in:

Proteins, 2006, v. 63, n. 3, p. 709, doi. 10.1002/prot.20896

By:

Marchut, Alexander J.;
Smith, Anne Voegler;
Hall, Carol K.

Publication type:

Article