Works matching IS 08873585 AND DT 2006 AND VI 62 AND IP 4

Results: 30

Directed evolution of the epidermal growth factor receptor extracellular domain for expression in yeast.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1026, doi. 10.1002/prot.20618

By:

Kim, Yong-Sung;
Bhandari, Rashna;
Cochran, Jennifer R.;
Kuriyan, John;
Wittrup, K. Dane

Publication type:

Article

Structural variation and immune recognition of the P1.2 subtype meningococcal antigen.

Published in:

Proteins, 2006, v. 62, n. 4, p. 947, doi. 10.1002/prot.20800

By:

Tzitzilonis, Christos;
Prince, Stephen M.;
Collins, Richard F.;
Achtman, Mark;
Feavers, Ian M.;
Maiden, Martin C. J.;
Derrick, Jeremy P.

Publication type:

Article

SPINS: A laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations.

Published in:

Proteins, 2006, v. 62, n. 4, p. 843, doi. 10.1002/prot.20840

By:

Baran, Michael C.;
Moseley, Hunter N. B.;
Aramini, James M.;
Bayro, Marvin J.;
Monleon, Daniel;
Locke, Jessica Y.;
Montelione, Gaetano T.

Publication type:

Article

Evaluating the quality of NMR structures by local density of protons.

Published in:

Proteins, 2006, v. 62, n. 4, p. 852, doi. 10.1002/prot.20811

By:

Ban, Yih-En Andrew;
Rudolph, Johannes;
Zhou, Pei;
Edelsbrunner, Herbert

Publication type:

Article

Energetics of the native and non-native states of the glycophorin transmembrane helix dimer.

Published in:

Proteins, 2006, v. 62, n. 4, p. 996, doi. 10.1002/prot.20844

By:

Mottamal, Madhusoodanan;
Zhang, Jinming;
Lazaridis, Themis

Publication type:

Article

Accounting for loop flexibility during protein-protein docking.

Published in:

Proteins, 2006, v. 62, n. 4, p. 956, doi. 10.1002/prot.20770

By:

Bastard, Karine;
Prévost, Chantal;
Zacharias, Martin

Publication type:

Article

Assessing a novel approach for predicting local 3D protein structures from sequence.

Published in:

Proteins, 2006, v. 62, n. 4, p. 865, doi. 10.1002/prot.20815

By:

Benros, Cristina;
de Brevern, Alexandre G.;
Etchebest, Catherine;
Hazout, Serge

Publication type:

Article

Site-specific transamidation and deamidation of the small heat-shock protein Hsp20 by tissue transglutaminase.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1044, doi. 10.1002/prot.20837

By:

Boros, Sandor;
Åhrman, Emma;
Wunderink, Lisa;
Kamps, Bram;
de Jong, Wilfried W.;
Boelens, Wilbert C.;
Emanuelsson, Cecilia Sundby

Publication type:

Article

Optimal design of protein docking potentials: Efficiency and limitations.

Published in:

Proteins, 2006, v. 62, n. 4, p. 970, doi. 10.1002/prot.20859

By:

Tobi, Dror;
Bahar, Ivet

Publication type:

Article

Prediction of protein stability changes for single-site mutations using support vector machines.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1125, doi. 10.1002/prot.20810

By:

Cheng, Jianlin;
Randall, Arlo;
Baldi, Pierre

Publication type:

Article

Prediction of protein secondary structure content using amino acid composition and evolutionary information.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1107, doi. 10.1002/prot.20821

By:

Lee, Soyoung;
Lee, Byung-chul;
Kim, Dongsup

Publication type:

Article

The histone database: A comprehensive resource for histones and histone fold-containing proteins.

Published in:

Proteins, 2006, v. 62, n. 4, p. 838, doi. 10.1002/prot.20814

By:

Mariño-Ramírez, Leonardo;
Hsu, Benjamin;
Baxevanis, Andreas D.;
Landsman, David

Publication type:

Article

SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs.

Published in:

Proteins, 2006, v. 62, n. 4, p. 881, doi. 10.1002/prot.20854

By:

Qiu, Jian;
Elber, Ron

Publication type:

Article

Electrostatic interactions of peptides flanking the tyrosine kinase domain in the epidermal growth factor receptor provides a model for intracellular dimerization and autophosphorylation.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1036, doi. 10.1002/prot.20780

By:

Aifa, Sami;
Miled, Nabil;
Frikha, Fakher;
Aniba, Mohamed R.;
Svensson, Samuel P.S.;
Rebai, Ahmed

Publication type:

Article

Generalized correlation for biomolecular dynamics.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1053, doi. 10.1002/prot.20784

By:

Lange, Oliver F.;
Grubmüller, Helmut

Publication type:

Article

Three-dimensional model of the human aromatase enzyme and density functional parameterization of the iron-containing protoporphyrin IX for a molecular dynamics study of heme-cysteinato cytochromes.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1074, doi. 10.1002/prot.20829

By:

Favia, Angelo Danilo;
Cavalli, Andrea;
Masetti, Matteo;
Carotti, Angelo;
Recanatini, Maurizio

Publication type:

Article

Crystal structure of HP0242, a hypothetical protein from Helicobacter pylori with a novel fold.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1138, doi. 10.1002/prot.20864

By:

Tsai, Jia-Yin;
Chen, Bo-Tsang;
Cheng, Hui-Chun;
Chen, Hsin-Yi;
Hsaio, Nai-Wan;
Lyu, Ping-Chiang;
Sun, Yuh-Ju

Publication type:

Article

PSI-DOCK: Towards highly efficient and accurate flexible ligand docking.

Published in:

Proteins, 2006, v. 62, n. 4, p. 934, doi. 10.1002/prot.20790

By:

Pei, Jianfeng;
Wang, Qi;
Liu, Zhenming;
Li, Qingliang;
Yang, Kun;
Lai, Luhua

Publication type:

Article

Multipass membrane protein structure prediction using Rosetta.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1010, doi. 10.1002/prot.20817

By:

Yarov-Yarovoy, Vladimir;
Schonbrun, Jack;
Baker, David

Publication type:

Article

Inferring protein interactions from experimental data by association probabilistic method.

Published in:

Proteins, 2006, v. 62, n. 4, p. 833, doi. 10.1002/prot.20783

By:

Chen, Luonan;
Wu, Ling-Yun;
Wang, Yong;
Zhang, Xiang-Sun

Publication type:

Article

Improvement of statistical potentials and threading score functions using information maximization.

Published in:

Proteins, 2006, v. 62, n. 4, p. 892, doi. 10.1002/prot.20501

By:

Solis, Armando D.;
Rackovsky, S.

Publication type:

Article

Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1115, doi. 10.1002/prot.20830

By:

Kim, Yohan;
Subramaniam, Shankar

Publication type:

Article

Folding and amyloid-fibril formation for a series of human stefins' chimeras: Any correlation?

Published in:

Proteins, 2006, v. 62, n. 4, p. 918, doi. 10.1002/prot.20812

By:

Kenig, Manca;
Jenko-Kokalj, Saša;
Tušek-Žnidarič, Magda;
Pompe-Novak, Maruša;
Gunčar, Gregor;
Turk, Dušan;
Waltho, Jonathan P.;
Staniforth, Rosemarie A.;
Avbelj, Franc;
Žerovnik, Eva

Publication type:

Article

Domain interactions direct misfolding and amyloid formation of yeast phosphoglycerate kinase.

Published in:

Proteins, 2006, v. 62, n. 4, p. 909, doi. 10.1002/prot.20823

By:

Osváth, Szabolcs;
Jäckel, Márta;
Agócs, Gergely;
Závodszky, Péter;
Köhler, Gottfried;
Fidy, Judit

Publication type:

Article

Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 Å resolution.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1133, doi. 10.1002/prot.20760

By:

Ishijima, Jun;
Uchida, Yumiko;
Kuroishi, Chizu;
Tuzuki, Chizuru;
Takahashi, Naoko;
Okazaki, Nobuo;
Yutani, Katsuhide;
Miyano, Masashi

Publication type:

Article

Insights on HIV-1 Tat:P/CAF bromodomain molecular recognition from in vivo experiments and molecular dynamics simulations.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1062, doi. 10.1002/prot.20805

By:

Pantano, Sergio;
Marcello, Alessandro;
Ferrari, Aldo;
Gaudiosi, Daniele;
Sabò, Arianna;
Pellegrini, Vittorio;
Beltram, Fabio;
Giacca, Mauro;
Carloni, Paolo

Publication type:

Article

Influence of the disulfide bond configuration on the dynamics of the spin label attached to cytochrome c.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1088, doi. 10.1002/prot.20838

By:

Murzyn, Krzysztof;
Róg, Tomasz;
Blicharski, Wojciech;
Dutka, Małgorzata;
Pyka, Janusz;
Szytula, Sebastian;
Froncisz, Wojciech

Publication type:

Article

A folding inhibitor of the HIV-1 protease.

Published in:

Proteins, 2006, v. 62, n. 4, p. 928, doi. 10.1002/prot.20849

By:

Broglia, R. A.;
Provasi, D.;
Vasile, F.;
Ottolina, G.;
Longhi, R.;
Tiana, G.

Publication type:

Article

Untangling influences of hydrophobicity on protein sequences and structures.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1101, doi. 10.1002/prot.20775

By:

Yahyanejad, Mehdi;
Burge, Christopher B.;
Kardar, Mehran

Publication type:

Article

Solvent participation in Serratia marcescens endonuclease complexes.

Published in:

Proteins, 2006, v. 62, n. 4, p. 982, doi. 10.1002/prot.20694

By:

Chen, Chuanying;
Beck, Brian W.;
Krause, Kurt;
Pettitt, B. Montgomery

Publication type:

Article