Works matching IS 08873585 AND DT 2005 AND VI 61 AND IP 4

Results: 47

Very fast empirical prediction and rationalization of protein pKa values.

Published in:

Proteins, 2005, v. 61, n. 4, p. 704, doi. 10.1002/prot.20660

By:

Li, Hui;
Robertson, Andrew D.;
Jensen, Jan H.

Publication type:

Article

Deuterium oxide promotes assembly and bundling of FtsZ protofilaments.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1101, doi. 10.1002/prot.20671

By:

Santra, Manas Kumar;
Dasgupta, Debjani;
Panda, Dulal

Publication type:

Article

Kinetic and crystallographic studies of glucopyranose spirohydantoin and glucopyranosylamine analogs inhibitors of glycogen phosphorylase.

Published in:

Proteins, 2005, v. 61, n. 4, p. 966, doi. 10.1002/prot.20653

By:

Watson, Kimberly A.;
Chrysina, Evangelia D.;
Tsitsanou, Katerina E.;
Zographos, Spyros E.;
Archontis, Georgios;
Fleet, George W.J.;
Oikonomakos, Nikos G.

Publication type:

Article

Survey of the geometric association of domain-domain interfaces.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1075, doi. 10.1002/prot.20693

By:

Kim, Wan Kyu;
Ison, Jon C.

Publication type:

Article

Use of bioinformatics tools for the annotation of disease-associated mutations in animal models.

Published in:

Proteins, 2005, v. 61, n. 4, p. 878, doi. 10.1002/prot.20664

By:

Ferrer-Costa, Carles;
Orozco, Modesto;
de la Cruz, Xavier

Publication type:

Article

Multiple display of a protein domain on a bacterial polymeric scaffold.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1089, doi. 10.1002/prot.20635

By:

Craig, P. O.;
Berguer, P. M.;
Ainciart, N.;
Zylberman, V.;
Thomas, M. G.;
Tosar, L. J. Martinez;
Bulloj, A.;
Boccaccio, G. L.;
Goldbaum, F. A.

Publication type:

Article

Mutagenesis at Pro309 of single-chain urokinase-type plasminogen activator alters its catalytic properties.

Published in:

Proteins, 2005, v. 61, n. 4, p. 870, doi. 10.1002/prot.20686

By:

Sun, Ziyong;
Liu, Jian-Ning

Publication type:

Article

Functional restraints on the patterns of amino acid substitutions: Application to sequence-structure homology recognition.

Published in:

Proteins, 2005, v. 61, n. 4, p. 722, doi. 10.1002/prot.20617

By:

Chelliah, Vijayalakshmi;
Blundell, Tom;
Mizuguchi, Kenji

Publication type:

Article

Solution structures of the reduced and Cu(I) bound forms of the first metal binding sequence of ATP7A associated with Menkes disease.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1038, doi. 10.1002/prot.20639

By:

DeSilva, Tara M.;
Veglia, Gianluigi;
Opella, Stanley J.

Publication type:

Article

Crystal structure of putative N-Acetyl-γ-glutamyl-phosphate reductase (AK071544) from rice ( Oryza sativa).

Published in:

Proteins, 2005, v. 61, n. 4, p. 1137, doi. 10.1002/prot.20679

By:

Nonaka, Tsuyoshi;
Kita, Akiko;
Miura-Ohnuma, Jun;
Katoh, Etsuko;
Inagaki, Noritoshi;
Yamazaki, Toshimasa;
Miki, Kunio

Publication type:

Article

Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8.

Published in:

Proteins, 2005, v. 61, n. 4, p. 999, doi. 10.1002/prot.20700

By:

Ihsanawati;
Kumasaka, Takashi;
Kaneko, Tomonori;
Morokuma, Chihiro;
Yatsunami, Rie;
Sato, Takao;
Nakamura, Satoshi;
Tanaka, Nobuo

Publication type:

Article

Crystal structure of the C107S/C112S mutant of yeast nuclear 2-Cys peroxiredoxin.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1146, doi. 10.1002/prot.20704

By:

Choi, Jongkeun;
Choi, Soonwoong;
Chon, Jae Kyung;
Choi, Jungwon;
Cha, Mee-Kyung;
Kim, Il-Han;
Shin, Whanchul

Publication type:

Article

Electrostatic potential at the retinal of three archaeal rhodopsins: Implications for their different absorption spectra.

Published in:

Proteins, 2005, v. 61, n. 4, p. 953, doi. 10.1002/prot.20744

By:

Kloppmann, Edda;
Becker, Torsten;
Ullmann, G. Matthias

Publication type:

Article

A tetrapeptide-based method for polyproline II-type secondary structure prediction.

Published in:

Proteins, 2005, v. 61, n. 4, p. 763, doi. 10.1002/prot.20670

By:

Vlasov, Peter K.;
Vlasova, Anna V.;
Tumanyan, Vladimir G.;
Esipova, Natalia G.

Publication type:

Article

Glycogen phosphorylase inhibitors: A free energy perturbation analysis of glucopyranose spirohydantoin analogues.

Published in:

Proteins, 2005, v. 61, n. 4, p. 984, doi. 10.1002/prot.20641

By:

Archontis, G.;
Watson, K. A.;
Xie, Q.;
Andreou, G.;
Chrysina, E. D.;
Zographos, S. E.;
Oikonomakos, N. G.;
Karplus, M.

Publication type:

Article

Structural differences between allelic variants of the ovine prion protein revealed by molecular dynamics simulations.

Published in:

Proteins, 2005, v. 61, n. 4, p. 840, doi. 10.1002/prot.20755

By:

Bujdoso, Raymond;
Burke, David F.;
Thackray, Alana M.

Publication type:

Article

Effects of environment on the structure of Pyrococcus furiosus rubredoxin: A molecular dynamics study.

Published in:

Proteins, 2005, v. 61, n. 4, p. 823, doi. 10.1002/prot.20685

By:

Ergenekan, Can E.;
Tan, Ming-Liang;
Ichiye, Toshiko

Publication type:

Article

Knowledge-based voting algorithm for automated protein functional annotation.

Published in:

Proteins, 2005, v. 61, n. 4, p. 907, doi. 10.1002/prot.20652

By:

Yu, G.X.;
Glass, E.M.;
Karonis, N.T.;
Maltsev, N.

Publication type:

Article

Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1117, doi. 10.1002/prot.20692

By:

Hattori, Motoyuki;
Mizohata, Eiichi;
Manzoku, Miho;
Bessho, Yoshitaka;
Murayama, Kazutaka;
Terada, Takaho;
Kuramitsu, Seiki;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Compact reduced thioredoxin structure from the thermophilic bacteria Thermus thermophilus.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1032, doi. 10.1002/prot.20623

By:

Rehse, Peter H.;
Kumei, Maki;
Tahirov, Tahir H.

Publication type:

Article

Refinement of unbound protein docking studies using biological knowledge.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1059, doi. 10.1002/prot.20634

By:

Heuser, Philipp;
Baù, Davide;
Benkert, Pascal;
Schomburg, Dietmar

Publication type:

Article

The impact of the fourth disulfide bridge in scorpion toxins of the α-KTx6 subfamily.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1010, doi. 10.1002/prot.20681

By:

Carrega, Louis;
Mosbah, Amor;
Ferrat, Gilles;
Beeton, Christine;
Andreotti, Nicolas;
Mansuelle, Pascal;
Darbon, Hervé;
De Waard, Michel;
Sabatier, Jean-Marc

Publication type:

Article

Correspondence of function and phylogeny of ABC proteins based on an automated analysis of 20 model protein data sets.

Published in:

Proteins, 2005, v. 61, n. 4, p. 888, doi. 10.1002/prot.20616

By:

Fuellen, Georg;
Spitzer, Michael;
Cullen, Paul;
Lorkowski, Stefan

Publication type:

Article

External cross-validation for unbiased evaluation of protein family detectors: Application to allergens.

Published in:

Proteins, 2005, v. 61, n. 4, p. 918, doi. 10.1002/prot.20656

By:

Soeria-Atmadja, Daniel;
Wallman, Mikael;
Björklund, Åsa K.;
Isaksson, Anders;
Hammerling, Ulf;
Gustafsson, Mats G.

Publication type:

Article

Free energy landscape and folding mechanism of a β-hairpin in explicit water: A replica exchange molecular dynamics study.

Published in:

Proteins, 2005, v. 61, n. 4, p. 795, doi. 10.1002/prot.20696

By:

Nguyen, Phuong H.;
Stock, Gerhard;
Mittag, Emil;
Hu, Chin-Kun;
Li, Mai Suan

Publication type:

Article

Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1121, doi. 10.1002/prot.20667

By:

Iwasaki, Wakana;
Miyatake, Hideyuki;
Miki, Kunio

Publication type:

Article

Crystal structure of the putative RNA methyltransferase PH1948 from Pyrococcus horikoshii, in complex with the copurified S-adenosyl- L-homocysteine.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1141, doi. 10.1002/prot.20678

By:

Gao, Yong-Gui;
Yao, Min;
Yong, Zhou;
Tanaka, Isao

Publication type:

Article

Crystal structure of a new class of glutathione transferase from the model human hookworm nematode Heligmosomoides polygyrus.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1024, doi. 10.1002/prot.20649

By:

Schuller, David J.;
Liu, Qun;
Kriksunov, Irina A.;
Campbell, Alison M.;
Barrett, John;
Brophy, Peter M.;
Hao, Quan

Publication type:

Article

Folding behavior of chaperonin-mediated substrate protein.

Published in:

Proteins, 2005, v. 61, n. 4, p. 777, doi. 10.1002/prot.20689

By:

Xu, Wei-Xin;
Wang, Jun;
Wang, Wei

Publication type:

Article

Unwinding the helical linker of calcium-loaded calmodulin: A molecular dynamics study.

Published in:

Proteins, 2005, v. 61, n. 4, p. 829, doi. 10.1002/prot.20597

By:

Fiorin, G.;
Biekofsky, R. R.;
Pastore, A.;
Carloni, P.

Publication type:

Article

An intuitive approach to measuring protein surface curvature.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1068, doi. 10.1002/prot.20680

By:

Coleman, Ryan G.;
Burr, Michael A.;
Souvaine, Diane L.;
Cheng, Alan C.

Publication type:

Article

Focused library design in GPCR projects on the example of 5-HT2c agonists: Comparison of structure-based virtual screening with ligand-based search methods.

Published in:

Proteins, 2005, v. 61, n. 4, p. 938, doi. 10.1002/prot.20651

By:

Bissantz, Caterina;
Schalon, Claire;
Guba, Wolfgang;
Stahl, Martin

Publication type:

Article

Solution structure of conserved hypothetical protein HP0894 from Helicobacter pylori.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1114, doi. 10.1002/prot.20691

By:

Han, Kyung-Doo;
Park, Sung-Jean;
Jang, Sun-Bok;
Son, Woo-Sung;
Lee, Bong-Jin

Publication type:

Article

Origin of the sequence-dependent polyproline II structure in unfolded peptides.

Published in:

Proteins, 2005, v. 61, n. 4, p. 769, doi. 10.1002/prot.20655

By:

Kentsis, Alex;
Mezei, Mihaly;
Osman, Roman

Publication type:

Article

Structural basis for SUMO-E2 interaction revealed by a complex model using docking approach in combination with NMR data.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1050, doi. 10.1002/prot.20695

By:

Ding, Husheng;
Yang, Yuedong;
Zhang, Jiahai;
Wu, Jihui;
Liu, Haiyan;
Shi, Yunyu

Publication type:

Article

Sensitive detection of sequence similarity using combinatorial pattern discovery: A challenging study of two distantly related protein families.

Published in:

Proteins, 2005, v. 61, n. 4, p. 926, doi. 10.1002/prot.20608

By:

Darzentas, Nikos;
Rigoutsos, Isidore;
Ouzounis, Christos A.

Publication type:

Article

Molecular docking of balanol to dynamics snapshots of protein kinase A.

Published in:

Proteins, 2005, v. 61, n. 4, p. 850, doi. 10.1002/prot.20688

By:

Wong, Chung F.;
Kua, Jeremy;
Zhang, Yingkai;
Straatsma, T.P.;
McCammon, J. Andrew

Publication type:

Article

Crystal structure of the hypothetical protein ST2072 from Sulfolobus tokodaii.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1127, doi. 10.1002/prot.20619

By:

Tanaka, Yoshikazu;
Tsumoto, Kouhei;
Tanabe, Eiki;
Yasutake, Yoshiaki;
Sakai, Naoki;
Yao, Min;
Tanaka, Isao;
Kumagai, Izumi

Publication type:

Article

Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 Å resolution reveals a new fold.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1132, doi. 10.1002/prot.20610

By:

Klock, Heath E.;
Schwarzenbacher, Robert;
Xu, Qingping;
McMullan, Daniel;
Abdubek, Polat;
Ambing, Eileen;
Axelrod, Herbert;
Biorac, Tanya;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Deacon, Ashley M.;
DiDonato, Michael;
Elsliger, Marc-André;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Han, Gye Won;
Haugen, Justin

Publication type:

Article

Binding energy analysis for wild-type and Y181C mutant HIV-1 RT/8-Cl TIBO complex structures: Quantum chemical calculations based on the ONIOM method.

Published in:

Proteins, 2005, v. 61, n. 4, p. 859, doi. 10.1002/prot.20690

By:

Saen-oon, Suwipa;
Kuno, Mayuso;
Hannongbua, Supa

Publication type:

Article

Structural characterization of proteins using residue environments.

Published in:

Proteins, 2005, v. 61, n. 4, p. 741, doi. 10.1002/prot.20661

By:

Mooney, Sean D.;
Liang, Mike Hsin-Ping;
DeConde, Rob;
Altman, Russ B.

Publication type:

Article

Weighing in on a timeless controversy.

Published in:

Proteins, 2005, v. 61, n. 4, p. 699, doi. 10.1002/prot.20706

By:

Perry, Jason

Publication type:

Article

Comparative molecular dynamics-Similar folds and similar motions?

Published in:

Proteins, 2005, v. 61, n. 4, p. 809, doi. 10.1002/prot.20672

By:

Pang, Andrew;
Arinaminpathy, Yalini;
Sansom, Mark S. P.;
Biggin, Philip C.

Publication type:

Article

Solution structure of HP1242 from Helicobacter pylori.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1111, doi. 10.1002/prot.20654

By:

Kang, Su-Jin;
Park, Sung Jean;
Jung, Seo-Jeong;
Lee, Bong-Jin

Publication type:

Article

Rational genomics I: Antisense open reading frames and codon bias in short-chain oxido reductase enzymes and the evolution of the genetic code.

Published in:

Proteins, 2005, v. 61, n. 4, p. 900, doi. 10.1002/prot.20687

By:

Duax, William L.;
Huether, Robert;
Pletnev, Vladimir Z.;
Langs, David;
Addlagatta, Anthony;
Connare, Sonjay;
Habegger, Lukas;
Gill, Jay

Publication type:

Article

Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm.

Published in:

Proteins, 2005, v. 61, n. 4, p. 732, doi. 10.1002/prot.20698

By:

Tuffery, Pierre;
Derreumaux, Philippe

Publication type:

Article

Protein loop structure prediction with flexible stem geometries.

Published in:

Proteins, 2005, v. 61, n. 4, p. 748, doi. 10.1002/prot.20669

By:

Mönnigmann, M.;
Floudas, C.A.

Publication type:

Article