Works matching IS 08873585 AND DT 2005 AND VI 60 AND IP 2

Results: 27

Scoring docking models with evolutionary information.

Published in:

Proteins, 2005, v. 60, n. 2, p. 275, doi. 10.1002/prot.20570

By:

Tress, Michael;
de Juan, David;
Graña, Osvaldo;
Gómez, Manuel J.;
Gómez-Puertas, Paulino;
González, Jose M.;
López, Gonzalo;
Valencia, Alfonso

Publication type:

Article

Sailing the route from Gaeta, Italy, to CAPRI.

Published in:

Proteins, 2005, v. 60, n. 2, p. 149, doi. 10.1002/prot.20552

By:

Janin, Joël

Publication type:

Article

Data-driven docking: HADDOCK's adventures in CAPRI.

Published in:

Proteins, 2005, v. 60, n. 2, p. 232, doi. 10.1002/prot.20563

By:

van Dijk, A. D. J.;
de Vries, S. J.;
Dominguez, C.;
Chen, H.;
Zhou, H.-X.;
Bonvin, A. M. J. J.

Publication type:

Article

Progress in computation and amide hydrogen exchange for prediction of protein-protein complexes.

Published in:

Proteins, 2005, v. 60, n. 2, p. 302, doi. 10.1002/prot.20574

By:

Law, Dennis;
Hotchko, Matthew;
Ten Eyck, Lynn

Publication type:

Article

Progress in protein-protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.

Published in:

Proteins, 2005, v. 60, n. 2, p. 187, doi. 10.1002/prot.20556

By:

Schueler-Furman, Ora;
Wang, Chu;
Baker, David

Publication type:

Article

Study of protein-protein interaction using conformational space annealing.

Published in:

Proteins, 2005, v. 60, n. 2, p. 257, doi. 10.1002/prot.20567

By:

Lee, Kyoungrim;
Sim, Jaehyun;
Lee, Jooyoung

Publication type:

Article

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.

Published in:

Proteins, 2005, v. 60, n. 2, p. 150, doi. 10.1002/prot.20551

By:

Méndez, Raúl;
Leplae, Raphaël;
Lensink, Marc F.;
Wodak, Shoshana J.

Publication type:

Article

Geometry-based flexible and symmetric protein docking.

Published in:

Proteins, 2005, v. 60, n. 2, p. 224, doi. 10.1002/prot.20562

By:

Schneidman-Duhovny, Dina;
Inbar, Yuval;
Nussinov, Ruth;
Wolfson, Haim J.

Publication type:

Article

Development and testing of an automated approach to protein docking.

Published in:

Proteins, 2005, v. 60, n. 2, p. 296, doi. 10.1002/prot.20573

By:

Tovchigrechko, Andrei;
Vakser, Ilya A.

Publication type:

Article

CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock.

Published in:

Proteins, 2005, v. 60, n. 2, p. 181, doi. 10.1002/prot.20555

By:

Daily, Michael D.;
Masica, David;
Sivasubramanian, Arvind;
Somarouthu, Sony;
Gray, Jeffrey J.

Publication type:

Article

ATTRACT: Protein-protein docking in CAPRI using a reduced protein model.

Published in:

Proteins, 2005, v. 60, n. 2, p. 252, doi. 10.1002/prot.20566

By:

Zacharias, Martin

Publication type:

Article

Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.

Published in:

Proteins, 2005, v. 60, n. 2, p. 319, doi. 10.1002/prot.20577

By:

Ma, Xiao Hui;
Li, Chun Hua;
Shen, Long Zhu;
Gong, Xin Qi;
Chen, Wei Zu;
Wang, Cun Xin

Publication type:

Article

ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.

Published in:

Proteins, 2005, v. 60, n. 2, p. 207, doi. 10.1002/prot.20559

By:

Wiehe, Kevin;
Pierce, Brian;
Mintseris, Julian;
Tong, Wei Wei;
Anderson, Robert;
Chen, Rong;
Weng, Zhiping

Publication type:

Article

Approaching the CAPRI challenge with an efficient geometry-based docking.

Published in:

Proteins, 2005, v. 60, n. 2, p. 217, doi. 10.1002/prot.20561

By:

Inbar, Yuval;
Schneidman-Duhovny, Dina;
Halperin, Inbal;
Oron, Assaf;
Nussinov, Ruth;
Wolfson, Haim J.

Publication type:

Article

Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues.

Published in:

Proteins, 2005, v. 60, n. 2, p. 289, doi. 10.1002/prot.20572

By:

Terashi, Genki;
Takeda-Shitaka, Mayuko;
Takaya, Daisuke;
Komatsu, Katsuichiro;
Umeyama, Hideaki

Publication type:

Article

Classification of protein complexes based on docking difficulty.

Published in:

Proteins, 2005, v. 60, n. 2, p. 176, doi. 10.1002/prot.20554

By:

Vajda, Sandor

Publication type:

Article

Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.

Published in:

Proteins, 2005, v. 60, n. 2, p. 245, doi. 10.1002/prot.20565

By:

Camacho, Carlos J.

Publication type:

Article

Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.

Published in:

Proteins, 2005, v. 60, n. 2, p. 314, doi. 10.1002/prot.20576

By:

Zhang, Chi;
Liu, Song;
Zhou, Yaoqi

Publication type:

Article

Modeling oligomers with C<sub> n</sub> or D<sub> n</sub> symmetry: Application to CAPRI target 10.

Published in:

Proteins, 2005, v. 60, n. 2, p. 202, doi. 10.1002/prot.20558

By:

Berchanski, Alexander;
Segal, Dadi;
Eisenstein, Miriam

Publication type:

Article

Docking essential dynamics eigenstructures.

Published in:

Proteins, 2005, v. 60, n. 2, p. 269, doi. 10.1002/prot.20569

By:

Mustard, Diana;
Ritchie, David W.

Publication type:

Article

Protein-protein docking benchmark 2.0: An update.

Published in:

Proteins, 2005, v. 60, n. 2, p. 214, doi. 10.1002/prot.20560

By:

Mintseris, Julian;
Wiehe, Kevin;
Pierce, Brian;
Anderson, Robert;
Chen, Rong;
Janin, Joël;
Weng, Zhiping

Publication type:

Article

Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.

Published in:

Proteins, 2005, v. 60, n. 2, p. 281, doi. 10.1002/prot.20571

By:

Carter, Phil;
Lesk, Victor I.;
Islam, Suhail A.;
Sternberg, Michael J.E.

Publication type:

Article

The targets of CAPRI rounds 3-5.

Published in:

Proteins, 2005, v. 60, n. 2, p. 170, doi. 10.1002/prot.20553

By:

Janin, Joël

Publication type:

Article

Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.

Published in:

Proteins, 2005, v. 60, n. 2, p. 239, doi. 10.1002/prot.20564

By:

Comeau, Stephen R.;
Vajda, Sandor;
Camacho, Carlos J.

Publication type:

Article

Improving CAPRI predictions: Optimized desolvation for rigid-body docking.

Published in:

Proteins, 2005, v. 60, n. 2, p. 308, doi. 10.1002/prot.20575

By:

Fernández-Recio, Juan;
Abagyan, Ruben;
Totrov, Maxim

Publication type:

Article

Docking to single-domain and multiple-domain proteins: Old and new challenges.

Published in:

Proteins, 2005, v. 60, n. 2, p. 195, doi. 10.1002/prot.20557

By:

Ben-Zeev, E.;
Kowalsman, N.;
Ben-Shimon, A.;
Segal, D.;
Atarot, T.;
Noivirt, O.;
Shay, T.;
Eisenstein, M.

Publication type:

Article

Incorporation of flexibility into rigid-body docking: Applications in rounds 3-5 of CAPRI.

Published in:

Proteins, 2005, v. 60, n. 2, p. 263, doi. 10.1002/prot.20568

By:

Smith, Graham R.;
Fitzjohn, Paul W.;
Page, Christopher S.;
Bates, Paul A.

Publication type:

Article