Works matching IS 08873585 AND DT 2005 AND VI 59 AND IP 3

Results: 25

Multiple folding mechanisms of protein ubiquitin.

Published in:

Proteins, 2005, v. 59, n. 3, p. 565, doi. 10.1002/prot.20430

By:

Zhang, Jian;
Qin, Meng;
Wang, Wei

Publication type:

Article

Combining prediction of secondary structure and solvent accessibility in proteins.

Published in:

Proteins, 2005, v. 59, n. 3, p. 467, doi. 10.1002/prot.20441

By:

Adamczak, Rafał;
Porollo, Aleksey;
Meller, Jarosław

Publication type:

Article

Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus.

Published in:

Proteins, 2005, v. 59, n. 3, p. 644, doi. 10.1002/prot.20412

By:

Kitano, Ken;
Kita, Akiko;
Hakoshima, Toshio;
Niimura, Youichi;
Miki, Kunio

Publication type:

Article

Assembly factors of F1Fo-ATP synthase across genomes.

Published in:

Proteins, 2005, v. 59, n. 3, p. 393, doi. 10.1002/prot.20452

By:

Pícková, Andrea;
Potocký, Martin;
Houštěk, Josef

Publication type:

Article

Dissection of the GTPase mechanism of Ras protein by MD analysis of Ras mutants.

Published in:

Proteins, 2005, v. 59, n. 3, p. 528, doi. 10.1002/prot.20423

By:

Friedman, Zeev Y.;
Devary, Yoram

Publication type:

Article

Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction.

Published in:

Proteins, 2005, v. 59, n. 3, p. 545, doi. 10.1002/prot.20434

By:

Król, Marcin;
Roterman, Irena;
Piekarska, Barbara;
Konieczny, Leszek;
Rybarska, Janina;
Stopa, Barbara;
Spólnik, Paweł

Publication type:

Article

Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins.

Published in:

Proteins, 2005, v. 59, n. 3, p. 496, doi. 10.1002/prot.20456

By:

Adamian, Larisa;
Nanda, Vikas;
DeGrado, William F.;
Liang, Jie

Publication type:

Article

Automated use of mutagenesis data in structure prediction.

Published in:

Proteins, 2005, v. 59, n. 3, p. 454, doi. 10.1002/prot.20382

By:

Nanda, Vikas;
DeGrado, William F.

Publication type:

Article

Thermodynamic and kinetic characterization of a β-hairpin peptide in solution: An extended phase space sampling by molecular dynamics simulations in explicit water.

Published in:

Proteins, 2005, v. 59, n. 3, p. 510, doi. 10.1002/prot.20427

By:

Daidone, Isabella;
Amadei, Andrea;
Di Nola, Alfredo

Publication type:

Article

Identification and distribution of protein families in 120 completed genomes using Gene3D.

Published in:

Proteins, 2005, v. 59, n. 3, p. 603, doi. 10.1002/prot.20409

By:

Lee, David;
Grant, Alastair;
Marsden, Russell L.;
Orengo, Christine

Publication type:

Article

Structure of YciI from Haemophilus influenzae (HI0828) reveals a ferredoxin-like α/β-fold with a histidine/aspartate centered catalytic site.

Published in:

Proteins, 2005, v. 59, n. 3, p. 648, doi. 10.1002/prot.20411

By:

Willis, Mark A.;
Song, Feng;
Zhuang, Zhihao;
Krajewski, Wojciech;
Chalamasetty, Vani Rao;
Reddy, Prasad;
Howard, Andrew;
Dunaway-Mariano, Debra;
Herzberg, Osnat

Publication type:

Article

Automated computation of low-energy pathways for complex rearrangements in proteins: Application to the conformational switch of Ras p21.

Published in:

Proteins, 2005, v. 59, n. 3, p. 534, doi. 10.1002/prot.20422

By:

Noé, Frank;
Ille, Fabian;
Smith, Jeremy C.;
Fischer, Stefan

Publication type:

Article

Identification of domains and domain interface residues in multidomain proteins from graph spectral method.

Published in:

Proteins, 2005, v. 59, n. 3, p. 616, doi. 10.1002/prot.20444

By:

Sistla, Ramesh K.;
K. V., Brinda;
Vishveshwara, Saraswathi

Publication type:

Article

Quantum study of mutational effect in binding of efavirenz to HIV-1 RT.

Published in:

Proteins, 2005, v. 59, n. 3, p. 489, doi. 10.1002/prot.20455

By:

Mei, Ye;
He, Xiao;
Xiang, Yun;
Zhang, Da W.;
Zhang, J.Z.H.

Publication type:

Article

Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water.

Published in:

Proteins, 2005, v. 59, n. 3, p. 519, doi. 10.1002/prot.20426

By:

Colombo, Giorgio;
Daidone, Isabella;
Gazit, Ehud;
Amadei, Andrea;
Di Nola, Alfredo

Publication type:

Article

Linking tumor cell cytotoxicity to mechanism of drug action: An integrated analysis of gene expression, small-molecule screening and structural databases.

Published in:

Proteins, 2005, v. 59, n. 3, p. 403, doi. 10.1002/prot.20392

By:

Covell, David G.;
Wallqvist, Anders;
Huang, Ruili;
Thanki, Narmada;
Rabow, Alfred A.;
Lu, Xiang-Jun

Publication type:

Article

Induced refolding of a temperature denatured llama heavy-chain antibody fragment by its antigen.

Published in:

Proteins, 2005, v. 59, n. 3, p. 555, doi. 10.1002/prot.20378

By:

Dolk, Edward;
van Vliet, Cees;
Perez, Janice M.J.;
Vriend, Gert;
Darbon, Hervé;
Ferrat, Gilles;
Cambillau, Christian;
Frenken, Leon G.J.;
Verrips, Theo

Publication type:

Article

Structural analysis of interactions for complex formation between Ferredoxin-NADP+ reductase and its protein partners.

Published in:

Proteins, 2005, v. 59, n. 3, p. 592, doi. 10.1002/prot.20450

By:

Mayoral, Tomás;
Martínez-Júlvez, Marta;
Pérez-Dorado, Inmaculada;
Sanz-Aparicio, Julia;
Gómez-Moreno, Carlos;
Medina, Milagros;
Hermoso, Juan A.

Publication type:

Article

The effect of resolution-dependent global shape modifications on rigid-body protein-protein docking.

Published in:

Proteins, 2005, v. 59, n. 3, p. 580, doi. 10.1002/prot.20432

By:

Segal, Dadi;
Eisenstein, Miriam

Publication type:

Article

Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis.

Published in:

Proteins, 2005, v. 59, n. 3, p. 482, doi. 10.1002/prot.20454

By:

Purta, Elżbieta;
van Vliet, Françoise;
Tricot, Catherine;
De Bie, Lara G.;
Feder, Marcin;
Skowronek, Krzysztof;
Droogmans, Louis;
Bujnicki, Janusz M.

Publication type:

Article

Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.

Published in:

Proteins, 2005, v. 59, n. 3, p. 633, doi. 10.1002/prot.20436

By:

Tyler, Robert C.;
Aceti, David J.;
Bingman, Craig A.;
Cornilescu, Claudia C.;
Fox, Brian G.;
Frederick, Ronnie O.;
Jeon, Won Bae;
Lee, Min S.;
Newman, Craig S.;
Peterson, Francis C.;
Phillips, George N.;
Shahan, Mark N.;
Singh, Shanteri;
Song, Jikui;
Sreenath, Hassan K.;
Tyler, Ejan M.;
Ulrich, Eldon L.;
Vinarov, Dmitriy A.;
Vojtik, Frank C.;
Volkman, Brian F.

Publication type:

Article

PPRODO: Prediction of protein domain boundaries using neural networks.

Published in:

Proteins, 2005, v. 59, n. 3, p. 627, doi. 10.1002/prot.20442

By:

Sim, Jaehyun;
Kim, Seung-Yeon;
Lee, Jooyoung

Publication type:

Article

Protein secondary structure prediction with dihedral angles.

Published in:

Proteins, 2005, v. 59, n. 3, p. 476, doi. 10.1002/prot.20435

By:

Wood, Matthew J.;
Hirst, Jonathan D.

Publication type:

Article

Addressing the intrinsic disorder bottleneck in structural proteomics.

Published in:

Proteins, 2005, v. 59, n. 3, p. 444, doi. 10.1002/prot.20446

By:

Oldfield, Christopher J.;
Ulrich, Eldon L.;
Cheng, Yugong;
Dunker, A. Keith;
Markley, John L.

Publication type:

Article

Computational identification of proteins for selectivity assays.

Published in:

Proteins, 2005, v. 59, n. 3, p. 434, doi. 10.1002/prot.20428

By:

Yoon, Sukjoon;
Smellie, Andrew;
Hartsough, David;
Filikov, Anton

Publication type:

Article

Works matching IS 08873585 AND DT 2005 AND VI 59 AND IP 3

Multiple folding mechanisms of protein ubiquitin.

Combining prediction of secondary structure and solvent accessibility in proteins.

Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus.

Assembly factors of F<sub>1</sub>F<sub>o</sub>-ATP synthase across genomes.

Dissection of the GTPase mechanism of Ras protein by MD analysis of Ras mutants.

Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction.

Empirical lipid propensities of amino acid residues in multispan alpha helical membrane proteins.

Automated use of mutagenesis data in structure prediction.

Thermodynamic and kinetic characterization of a β-hairpin peptide in solution: An extended phase space sampling by molecular dynamics simulations in explicit water.

Identification and distribution of protein families in 120 completed genomes using Gene3D.

Structure of YciI from Haemophilus influenzae (HI0828) reveals a ferredoxin-like α/β-fold with a histidine/aspartate centered catalytic site.

Automated computation of low-energy pathways for complex rearrangements in proteins: Application to the conformational switch of Ras p21.

Identification of domains and domain interface residues in multidomain proteins from graph spectral method.

Quantum study of mutational effect in binding of efavirenz to HIV-1 RT.

Molecular dynamics simulation of the aggregation of the core-recognition motif of the islet amyloid polypeptide in explicit water.

Linking tumor cell cytotoxicity to mechanism of drug action: An integrated analysis of gene expression, small-molecule screening and structural databases.

Induced refolding of a temperature denatured llama heavy-chain antibody fragment by its antigen.

Structural analysis of interactions for complex formation between Ferredoxin-NADP<sup>+</sup> reductase and its protein partners.

The effect of resolution-dependent global shape modifications on rigid-body protein-protein docking.

Sequence-structure-function relationships of a tRNA (m<sup>7</sup>G46) methyltransferase studied by homology modeling and site-directed mutagenesis.

Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.

PPRODO: Prediction of protein domain boundaries using neural networks.

Protein secondary structure prediction with dihedral angles.

Addressing the intrinsic disorder bottleneck in structural proteomics.

Computational identification of proteins for selectivity assays.