Works matching IS 08873585 AND DT 2005 AND VI 58 AND IP 3

Results: 28

FAST: A novel protein structure alignment algorithm.

Published in:

Proteins, 2005, v. 58, n. 3, p. 618, doi. 10.1002/prot.20331

By:

Zhu, Jianhua;
Weng, Zhiping

Publication type:

Article

Conservation of cis prolyl bonds in proteins during evolution.

Published in:

Proteins, 2005, v. 58, n. 3, p. 589, doi. 10.1002/prot.20342

By:

Lorenzen, Stephan;
Peters, Björn;
Goede, Andrean;
Preissner, Robert;
Frömmel, Cornelius

Publication type:

Article

Lattice models, packing density, and Boltzmann-like distribution of cavities in proteins.

Published in:

Proteins, 2005, v. 58, n. 3, p. 547, doi. 10.1002/prot.20353

By:

Rashin, Alexander A.;
Rashin, Abraham H. L.

Publication type:

Article

Binding of recombinant PrPc to human plasminogen: Kinetic and thermodynamic study using a resonant mirror biosensor.

Published in:

Proteins, 2005, v. 58, n. 3, p. 728, doi. 10.1002/prot.20346

By:

Cuccioloni, Massimiliano;
Amici, Manila;
Eleuteri, Anna Maria;
Biagetti, Massimo;
Barocci, Simone;
Angeletti, Mauro

Publication type:

Article

Structural dynamics of nucleosome core particle: Comparison with nucleosomes containing histone variants.

Published in:

Proteins, 2005, v. 58, n. 3, p. 683, doi. 10.1002/prot.20357

By:

Ramaswamy, Amutha;
Bahar, Ivet;
Ioshikhes, Ilya

Publication type:

Article

High affinity fucose binding of Pseudomonas aeruginosa lectin PA-IIL: 1.0 Å resolution crystal structure of the complex combined with thermodynamics and computational chemistry approaches.

Published in:

Proteins, 2005, v. 58, n. 3, p. 735, doi. 10.1002/prot.20330

By:

Mitchell, Edward P.;
Sabin, Charles;
Šnajdrová, Lenka;
Pokorná, Martina;
Perret, Stéphanie;
Gautier, Catherine;
Hofr, Ctirad;
Gilboa-Garber, Nechama;
Koča, Jaroslav;
Wimmerová, Michaela;
Imberty, Anne

Publication type:

Article

Analysis of sequence-reactivity space for protein-protein interactions.

Published in:

Proteins, 2005, v. 58, n. 3, p. 661, doi. 10.1002/prot.20341

By:

Li, Jiangtian;
Yi, ZhengPing;
Laskowski, Michael C.;
Laskowski, Michael;
Bailey-Kellogg, Chris

Publication type:

Article

Comparative analysis of HIV-1 Tat variants.

Published in:

Proteins, 2005, v. 58, n. 3, p. 638, doi. 10.1002/prot.20323

By:

Pantano, Sergio;
Carloni, Paolo

Publication type:

Article

The ConSurf-HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures.

Published in:

Proteins, 2005, v. 58, n. 3, p. 610, doi. 10.1002/prot.20305

By:

Glaser, Fabian;
Rosenberg, Yossi;
Kessel, Amit;
Pupko, Tal;
Ben-Tal, Nir

Publication type:

Article

Crystal structure of a component of glycine cleavage system: T-protein from Pyrococcus horikoshii OT3 at 1.5 Å resolution.

Published in:

Proteins, 2005, v. 58, n. 3, p. 769, doi. 10.1002/prot.20345

By:

Lokanath, Neratur K.;
Kuroishi, Chizu;
Okazaki, Nobuo;
Kunishima, Naoki

Publication type:

Article

Candidate nsSNPs that can affect the functions and interactions of cell cycle proteins.

Published in:

Proteins, 2005, v. 58, n. 3, p. 697, doi. 10.1002/prot.20367

By:

Savas, Sevtap;
Ahmad, M. Farhan;
Shariff, Mehjabeen;
Kim, David Y.;
Ozcelik, Hilmi

Publication type:

Article

Ab initio prediction of the three-dimensional structure of a de novo designed protein: A double-blind case study.

Published in:

Proteins, 2005, v. 58, n. 3, p. 560, doi. 10.1002/prot.20338

By:

Klepeis, John L.;
Wei, Yinan;
Hecht, Michael H.;
Floudas, Christodoulos A.

Publication type:

Article

A detailed unfolding pathway of a (β/α)8-barrel protein as studied by molecular dynamics simulations.

Published in:

Proteins, 2005, v. 58, n. 3, p. 538, doi. 10.1002/prot.20349

By:

Akanuma, Satoshi;
Miyagawa, Hiroh;
Kitamura, Kunihiro;
Yamagishi, Akihiko

Publication type:

Article

Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum.

Published in:

Proteins, 2005, v. 58, n. 3, p. 751, doi. 10.1002/prot.20022

By:

Cuff, M. E.;
Miller, D. J.;
Korolev, S.;
Xu, X.;
Anderson, W. F.;
Edwards, A.;
Joachimiak, A.;
Savchenko, A.

Publication type:

Article

Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: Deciphering the effect of intermolecular interactions on computational structure prediction of the p27 Kip1 protein bound to the cyclin A-cyclin-dependent kinase 2 complex

Published in:

Proteins, 2005, v. 58, n. 3, p. 706, doi. 10.1002/prot.20351

By:

Verkhivker, Gennady M.

Publication type:

Article

Crystal structure of the copper homeostasis protein (CutCm) from Shigella flexneri at 1.7 Å resolution: The first structure of a new sequence family of TIM barrels.

Published in:

Proteins, 2005, v. 58, n. 3, p. 764, doi. 10.1002/prot.20362

By:

Zhu, De-Yu;
Zhu, Yong-Qun;
Huang, Ren-Huai;
Xiang, Ye;
Yang, Na;
Lu, Hong-Xia;
Li, Gen-Pei;
Jin, Qi;
Wang, Da-Cheng

Publication type:

Article

Neutralization of NGF-TrkA receptor interaction by the novel antagonistic anti-TrkA monoclonal antibody MNAC13: A structural insight.

Published in:

Proteins, 2005, v. 58, n. 3, p. 717, doi. 10.1002/prot.20366

By:

Covaceuszach, Sonia;
Cattaneo, Antonino;
Lamba, Doriano

Publication type:

Article

Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation.

Published in:

Proteins, 2005, v. 58, n. 3, p. 759, doi. 10.1002/prot.20337

By:

Lim, Kap;
Doseeva, Victoria;
Demirkan, Elif Sarikaya;
Pullalarevu, Sadhana;
Krajewski, Wojciech;
Galkin, Andrey;
Howard, Andrew;
Herzberg, Osnat

Publication type:

Article

Small-world network approach to identify key residues in protein-protein interaction.

Published in:

Proteins, 2005, v. 58, n. 3, p. 672, doi. 10.1002/prot.20348

By:

del Sol, Antonio;
O'Meara, Paul

Publication type:

Article

NdPASA: A novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.

Published in:

Proteins, 2005, v. 58, n. 3, p. 628, doi. 10.1002/prot.20359

By:

Wang, Junwen;
Feng, Jin-An

Publication type:

Article

Refinement of X-ray data on dual cosubstrate specificity of CK2 kinase by free energy calculations based on molecular dynamics simulation.

Published in:

Proteins, 2005, v. 58, n. 3, p. 511, doi. 10.1002/prot.20350

By:

Setny, Piotr;
Geller, Maciej

Publication type:

Article

Prediction of interfaces for oligomerizations of G-protein coupled receptors.

Published in:

Proteins, 2005, v. 58, n. 3, p. 644, doi. 10.1002/prot.20332

By:

Nemoto, Wataru;
Toh, Hiroyuki

Publication type:

Article

Water dynamics simulation as a tool for probing proton transfer pathways in a heptahelical membrane protein.

Published in:

Proteins, 2005, v. 58, n. 3, p. 528, doi. 10.1002/prot.20343

By:

Kandt, Christian;
Gerwert, Klaus;
Schlitter, Jürgen

Publication type:

Article

Structure conservation in cytochromes P450.

Published in:

Proteins, 2005, v. 58, n. 3, p. 596, doi. 10.1002/prot.20354

By:

Mestres, Jordi

Publication type:

Article

NMR structure of the 18 kDa protein CC1736 from Caulobacter crescentus identifies a member of the 'START' domain superfamily and suggests residues mediating substrate specificity.

Published in:

Proteins, 2005, v. 58, n. 3, p. 747, doi. 10.1002/prot.20365

By:

Shen, Yang;
Goldsmith-Fischman, Sharon;
Atreya, Hanudatta S.;
Acton, Thomas;
Ma, LiChung;
Xiao, Rong;
Honig, Barry;
Montelione, Gaetano T.;
Szyperski, Thomas

Publication type:

Article

Crystal structure of an α/β serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 Å resolution.

Published in:

Proteins, 2005, v. 58, n. 3, p. 755, doi. 10.1002/prot.20336

By:

Arndt, Joseph W.;
Schwarzenbacher, Robert;
Page, Rebecca;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Canaves, Jaume M.;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Michael;
Elsliger, Marc-André;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hale, Joanna;
Hampton, Eric;
Han, Gye Won;
Haugen, Justin;
Hornsby, Michael

Publication type:

Article

Peptide models XLV: Conformational properties of N-formyl- L-methioninamide and its relevance to methionine in proteins.

Published in:

Proteins, 2005, v. 58, n. 3, p. 571, doi. 10.1002/prot.20307

By:

Láng, András;
Csizmadia, Imre G.;
Perczel, András

Publication type:

Article

Implicit solvent simulations of peptide interactions with anionic lipid membranes.

Published in:

Proteins, 2005, v. 58, n. 3, p. 518, doi. 10.1002/prot.20358

By:

Lazaridis, Themis

Publication type:

Article

Works matching IS 08873585 AND DT 2005 AND VI 58 AND IP 3

FAST: A novel protein structure alignment algorithm.

Conservation of cis prolyl bonds in proteins during evolution.

Lattice models, packing density, and Boltzmann-like distribution of cavities in proteins.

Binding of recombinant PrP<sup>c</sup> to human plasminogen: Kinetic and thermodynamic study using a resonant mirror biosensor.

Structural dynamics of nucleosome core particle: Comparison with nucleosomes containing histone variants.

High affinity fucose binding of Pseudomonas aeruginosa lectin PA-IIL: 1.0 Å resolution crystal structure of the complex combined with thermodynamics and computational chemistry approaches.

Analysis of sequence-reactivity space for protein-protein interactions.

Comparative analysis of HIV-1 Tat variants.

The ConSurf-HSSP database: The mapping of evolutionary conservation among homologs onto PDB structures.

Crystal structure of a component of glycine cleavage system: T-protein from Pyrococcus horikoshii OT3 at 1.5 Å resolution.

Candidate nsSNPs that can affect the functions and interactions of cell cycle proteins.

Ab initio prediction of the three-dimensional structure of a de novo designed protein: A double-blind case study.

A detailed unfolding pathway of a (β/α)<sub>8</sub>-barrel protein as studied by molecular dynamics simulations.

Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum.

Protein conformational transitions coupled to binding in molecular recognition of unstructured proteins: Deciphering the effect of intermolecular interactions on computational structure prediction of the p27<sup> Kip1</sup> protein bound to the cyclin A-cyclin-dependent kinase 2 complex

Crystal structure of the copper homeostasis protein (CutCm) from Shigella flexneri at 1.7 Å resolution: The first structure of a new sequence family of TIM barrels.

Neutralization of NGF-TrkA receptor interaction by the novel antagonistic anti-TrkA monoclonal antibody MNAC13: A structural insight.

Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation.

Small-world network approach to identify key residues in protein-protein interaction.

NdPASA: A novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.

Refinement of X-ray data on dual cosubstrate specificity of CK2 kinase by free energy calculations based on molecular dynamics simulation.

Prediction of interfaces for oligomerizations of G-protein coupled receptors.

Water dynamics simulation as a tool for probing proton transfer pathways in a heptahelical membrane protein.

Structure conservation in cytochromes P450.

NMR structure of the 18 kDa protein CC1736 from Caulobacter crescentus identifies a member of the 'START' domain superfamily and suggests residues mediating substrate specificity.

Crystal structure of an α/β serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 Å resolution.

Peptide models XLV: Conformational properties of N-formyl- L-methioninamide and its relevance to methionine in proteins.

Implicit solvent simulations of peptide interactions with anionic lipid membranes.