Works matching IS 08873585 AND DT 2004 AND VI 55 AND IP 4

Results: 32

Crystal structure of isocitrate dehydrogenase from Aeropyrum pernix.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1087, doi. 10.1002/prot.20121

By:

Jeong, Jong-Jin;
Sonoda, Tomoaki;
Fushinobu, Shinya;
Shoun, Hirofumi;
Wakagi, Takayoshi

Publication type:

Article

Molecular modeling of protein function regions.

Published in:

Proteins, 2004, v. 55, n. 4, p. 942, doi. 10.1002/prot.10519

By:

DeWeese-Scott, Carol;
Moult, John

Publication type:

Article

Protein-water interactions in ribonuclease A and angiogenin: A molecular dynamics study.

Published in:

Proteins, 2004, v. 55, n. 4, p. 915, doi. 10.1002/prot.20114

By:

Sanjeev, B. S.;
Vishveshwara, S.

Publication type:

Article

Apolipoprotein E-low density lipoprotein receptor binding: Study of protein-protein interaction in rationally selected docked complexes.

Published in:

Proteins, 2004, v. 55, n. 4, p. 874, doi. 10.1002/prot.20080

By:

Prévost, Martine;
Raussens, Vincent

Publication type:

Article

Theoretical study of the ligand-CYP2B4 complexes: Effect of structure on binding free energies and heme spin state.

Published in:

Proteins, 2004, v. 55, n. 4, p. 895, doi. 10.1002/prot.20062

By:

Harris, Danni L.;
Park, Jin-Young;
Gruenke, Larry;
Waskell, Lucy

Publication type:

Article

Ultrahigh resolution drug design I: Details of interactions in human aldose reductase-inhibitor complex at 0.66 Å.

Published in:

Proteins, 2004, v. 55, n. 4, p. 792, doi. 10.1002/prot.20015

By:

Howard, E.I.;
Sanishvili, R.;
Cachau, R.E.;
Mitschler, A.;
Chevrier, B.;
Barth, P.;
Lamour, V.;
Van Zandt, M.;
Sibley, E.;
Bon, C.;
Moras, D.;
Schneider, T.R.;
Joachimiak, A.;
Podjarny, A.

Publication type:

Article

Superfamily active site templates.

Published in:

Proteins, 2004, v. 55, n. 4, p. 962, doi. 10.1002/prot.20099

By:

Meng, Elaine C.;
Polacco, Benjamin J.;
Babbitt, Patricia C.

Publication type:

Article

Dynamics and energetics of water permeation through the aquaporin channel.

Published in:

Proteins, 2004, v. 55, n. 4, p. 924, doi. 10.1002/prot.10642

By:

Vidossich, Pietro;
Cascella, Michele;
Carloni, Paolo

Publication type:

Article

Solution structure of BmKK2, a new potassium channel blocker from the venom of chinese scorpion Buthus martensi Karsch.

Published in:

Proteins, 2004, v. 55, n. 4, p. 835, doi. 10.1002/prot.20117

By:

Zhang, Naixia;
Li, Minghua;
Chen, Xiang;
Wang, Yuefeng;
Wu, Gong;
Hu, Guoyuan;
Wu, Houming

Publication type:

Article

A new perspective on analysis of helix-helix packing preferences in globular proteins.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1014, doi. 10.1002/prot.20083

By:

Trovato, Antonio;
Seno, Flavio

Publication type:

Article

The emergence of catalytic and structural diversity within the beta-clip fold.

Published in:

Proteins, 2004, v. 55, n. 4, p. 977, doi. 10.1002/prot.20076

By:

Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1005, doi. 10.1002/prot.20007

By:

Zhou, Hongyi;
Zhou, Yaoqi

Publication type:

Article

Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): A novel fold with a conserved sequence motif.

Published in:

Proteins, 2004, v. 55, n. 4, p. 785, doi. 10.1002/prot.10593

By:

Chen, Shengfeng;
Jancrick, Jaru;
Yokota, Hisao;
Kim, Rosalind;
Kim, Sung-Hou

Publication type:

Article

Pex5p binding affinities for canonical and noncanonical PTS1 peptides.

Published in:

Proteins, 2004, v. 55, n. 4, p. 856, doi. 10.1002/prot.20112

By:

Maynard, Ernest L.;
Gatto, Gregory J.;
Berg, Jeremy M.

Publication type:

Article

Antibody recognition of chiral surfaces. Structural models of antibody complexes with leucine-leucine-tyrosine crystal surfaces.

Published in:

Proteins, 2004, v. 55, n. 4, p. 862, doi. 10.1002/prot.20042

By:

Geva, Merav;
Eisenstein, Miriam;
Addadi, Lia

Publication type:

Article

Sequence and structure of epoxide hydrolases: A systematic analysis.

Published in:

Proteins, 2004, v. 55, n. 4, p. 846, doi. 10.1002/prot.20013

By:

Barth, Sandra;
Fischer, Markus;
Schmid, Rolf D.;
Pleiss, Jürgen

Publication type:

Article

Importance of hydrophobic cluster formation through long-range contacts in the folding transition state of two-state proteins.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1023, doi. 10.1002/prot.20109

By:

Selvaraj, S.;
Gromiha, M. Michael

Publication type:

Article

Expanded turn conformations: Characterization and sequence-structure correspondence in α-turns with implications in helix folding.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1090, doi. 10.1002/prot.20189

By:

Dasgupta, Bhaskar;
Pal, Lipika;
Basu, Gautam;
Chakrabarti, Pinak

Publication type:

Article

Role of protein in the primary step of the photoreaction of yellow protein.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1063, doi. 10.1002/prot.20006

By:

Yamada, Atsushi;
Ishikura, Takakazu;
Yamato, Takahisa

Publication type:

Article

Molecular dynamics simulations of structural changes during procaspase 3 activation.

Published in:

Proteins, 2004, v. 55, n. 4, p. 932, doi. 10.1002/prot.20046

By:

Piana, Stefano;
Rothlisberger, Ursula

Publication type:

Article

Virtual screening for inhibitors of human aldose reductase.

Published in:

Proteins, 2004, v. 55, n. 4, p. 814, doi. 10.1002/prot.20057

By:

Kraemer, Oliver;
Hazemann, Isabelle;
Podjarny, Alberto D.;
Klebe, Gerhard

Publication type:

Article

An unusual triosephosphate isomerase from the early divergent eukaryote Giardia lamblia.

Published in:

Proteins, 2004, v. 55, n. 4, p. 824, doi. 10.1002/prot.20097

By:

López-Velázquez, Gabriel;
Molina-Ortiz, Dora;
Cabrera, Nallely;
Hernández-Alcántara, Gloria;
Peon-Peralta, Jorge;
Yépez-Mulia, Lilian;
Pérez-Montfort, Ruy;
Reyes-Vivas, Horacio

Publication type:

Article

Prediction of the bonding states of cysteines Using the support vector machines based on multiple feature vectors and cysteine state sequences.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1036, doi. 10.1002/prot.20079

By:

Chen, Yu-Ching;
Lin, Yeong-Shin;
Lin, Chih-Jen;
Hwang, Jenn-Kang

Publication type:

Article

A general clustering approach with application to the Miyazawa-Jernigan potentials for amino acids.

Published in:

Proteins, 2004, v. 55, n. 4, p. 999, doi. 10.1002/prot.10570

By:

Esteve, J.G.;
Falceto, F.

Publication type:

Article

Relationships between amino acid sequence and backbone torsion angle preferences.

Published in:

Proteins, 2004, v. 55, n. 4, p. 992, doi. 10.1002/prot.20100

By:

Keskin, O.;
Yuret, D.;
Gursoy, A.;
Turkay, M.;
Erman, B.

Publication type:

Article

Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces.

Published in:

Proteins, 2004, v. 55, n. 4, p. 885, doi. 10.1002/prot.20111

By:

Tsuchiya, Yuko;
Kinoshita, Kengo;
Nakamura, Haruki

Publication type:

Article

Ultrahigh resolution drug design. II. Atomic resolution structures of human aldose reductase holoenzyme complexed with fidarestat and minalrestat: Implications for the binding of cyclic imide inhibitors.

Published in:

Proteins, 2004, v. 55, n. 4, p. 805, doi. 10.1002/prot.20001

By:

El-Kabbani, Ossama;
Darmanin, Connie;
Schneider, Thomas R.;
Hazemann, Isabelle;
Ruiz, Federico;
Oka, Mitsuru;
Joachimiak, Andrzejj;
Schulze-Briese, Clemens;
Tomizaki, Takashi;
Mitschler, Andre;
Podjarny, Alberto

Publication type:

Article

Direct measure of functional importance visualized atom-by-atom for photoactive yellow protein: Application to photoisomerization reaction.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1070, doi. 10.1002/prot.20063

By:

Yamada, Atsushi;
Ishikura, Takakazu;
Yamato, Takahisa

Publication type:

Article

Irreversible formation of intermediate BSA oligomers requires and induces conformational changes.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1053, doi. 10.1002/prot.20074

By:

Vaiana, S.M.;
Emanuele, A.;
Palma-Vittorelli, M.B.;
Palma, M.U.

Publication type:

Article

A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1082, doi. 10.1002/prot.20119

By:

Liu, Jinyu;
Yokota, Hisao;
Kim, Rosalind;
Kim, Sung-Hou

Publication type:

Article

Modeling effects of mutations in coiled-coil structures: Case study using epidermolysis bullosa simplex mutations in segment 1a of k5/k14 intermediate filaments.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1043, doi. 10.1002/prot.20089

By:

Smith, Thomasin A.;
Steinert, Peter M.;
Parry, David A.D.

Publication type:

Article

Crystal structure of an Udp- n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 Å resolution.

Published in:

Proteins, 2004, v. 55, n. 4, p. 1078, doi. 10.1002/prot.20034

By:

Spraggon, Glen;
Schwarzenbacher, Robert;
Kreusch, Andreas;
Lee, Christian C.;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Brinen, Linda S.;
Canaves, Jaume M.;
Cambell, Jamison;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Eshagi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.

Publication type:

Article