Works matching IS 08873585 AND DT 2004 AND VI 55 AND IP 3

Results: 36

Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 Å resolution.

Published in:

Proteins, 2004, v. 55, n. 3, p. 759, doi. 10.1002/prot.10646

By:

Schwarzenbacher, Robert;
Jaroszewski, Lukasz;
von Delft, Frank;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanja;
Brinen, Linda S.;
Canaves, Jaume M.;
Cambell, Jamison;
Chiu, Hsui-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Eshagi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric

Publication type:

Article

On the functional significance of electron density protein structure alignments.

Published in:

Proteins, 2004, v. 55, n. 3, p. 646, doi. 10.1002/prot.20059

By:

Constans, Pere

Publication type:

Article

Polyproline II helix is the preferred conformation for unfolded polyalanine in water.

Published in:

Proteins, 2004, v. 55, n. 3, p. 502, doi. 10.1002/prot.20050

By:

Mezei, Mihaly;
Fleming, Patrick J.;
Srinivasan, Rajgopal;
Rose, George D.

Publication type:

Article

Atomic insight into the CD4 binding-induced conformational changes in HIV-1 gp120.

Published in:

Proteins, 2004, v. 55, n. 3, p. 582, doi. 10.1002/prot.20061

By:

Hsu, Shang-Te D.;
Bonvin, Alexandre M.J.J.

Publication type:

Article

The determinants of carboxyl pK<sub>a</sub> values in turkey ovomucoid third domain.

Published in:

Proteins, 2004, v. 55, n. 3, p. 689, doi. 10.1002/prot.20032

By:

Li, Hui;
Robertson, Andrew D.;
Jensen, Jan H.

Publication type:

Article

Topological thermal instability and length of proteins.

Published in:

Proteins, 2004, v. 55, n. 3, p. 529, doi. 10.1002/prot.20072

By:

Burioni, Raffaella;
Cassi, Davide;
Cecconi, Fabio;
Vulpiani, Angelo

Publication type:

Article

Predicting protein quaternary structure by pseudo amino acid composition.

Published in:

Proteins, 2004, v. 55, n. 3, p. 781, doi. 10.1002/prot.20186

By:

Chou, Kuo-Chen;
Cai, Yu-Dong

Publication type:

Article

The architecture of the binding site in redox protein complexes: Implications for fast dissociation.

Published in:

Proteins, 2004, v. 55, n. 3, p. 603, doi. 10.1002/prot.20043

By:

Crowley, Peter B.;
Carrondo, Maria Arménia

Publication type:

Article

Recognition of coarse-grained protein tertiary structure.

Published in:

Proteins, 2004, v. 55, n. 3, p. 536, doi. 10.1002/prot.20094

By:

Lezon, Timothy;
Banavar, Jayanth R.;
Maritan, Amos

Publication type:

Article

Crystal structure of E. coli yddE protein reveals a striking homology with diaminopimelate epimerase.

Published in:

Proteins, 2004, v. 55, n. 3, p. 764, doi. 10.1002/prot.20025

By:

Grassick, Alice;
Sulzenbacher, Gerlind;
Roig-Zamboni, Véronique;
Campanacci, Valérie;
Cambillau, Christian;
Bourne, Yves

Publication type:

Article

A set of homology models of pore loop domain of six eukaryotic voltage-gated potassium channels Kv1.1-Kv1.6.

Published in:

Proteins, 2004, v. 55, n. 3, p. 558, doi. 10.1002/prot.20065

By:

Liu, Hsuan-Liang;
Lin, Jin-Chung

Publication type:

Article

Crystal structure of human L-xylulose reductase holoenzyme: Probing the role of Asn107 with site-directed mutagenesis.

Published in:

Proteins, 2004, v. 55, n. 3, p. 724, doi. 10.1002/prot.20047

By:

El-Kabbani, Ossama;
Ishikura, Shuhei;
Darmanin, Connie;
Carbone, Vincenzo;
Chung, Roland P.-T.;
Usami, Noriyuki;
Hara, Akira

Publication type:

Article

Crystal structure of YIGZ, a conserved hypothetical protein from Escherichia coli k12 with a novel fold.

Published in:

Proteins, 2004, v. 55, n. 3, p. 775, doi. 10.1002/prot.20087

By:

Park, Frances;
Gajiwala, Ketan;
Eroshkina, Galina;
Furlong, Eva;
He, Dongmei;
Batiyenko, Yelena;
Romero, Rich;
Christopher, Jon;
Badger, John;
Hendle, Jorg;
Lin, Johann;
Peat, Tom;
Buchanan, Sean

Publication type:

Article

Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 Å resolution.

Published in:

Proteins, 2004, v. 55, n. 3, p. 768, doi. 10.1002/prot.20029

By:

Schwarzenbacher, Robert;
Jaroszewski, Lukasz;
von Delft, Frank;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanja;
Brinen, Linda S.;
Canaves, Jaume M.;
Cambell, Jamison;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Eshagi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric

Publication type:

Article

A structural and thermodynamic escape mechanism from a drug resistant mutation of the HIV-1 protease.

Published in:

Proteins, 2004, v. 55, n. 3, p. 594, doi. 10.1002/prot.20069

By:

Vega, Sonia;
Kang, Lin-Woo;
Velazquez-Campoy, Adrian;
Kiso, Yoshiaki;
Amzel, L. Mario;
Freire, Ernesto

Publication type:

Article

Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.

Published in:

Proteins, 2004, v. 55, n. 3, p. 487, doi. 10.1002/prot.20020

By:

Katsura, Yasuhiro;
Shirouzu, Mikako;
Yamaguchi, Hiroto;
Ishitani, Ryuichiro;
Nureki, Osamu;
Kuramitsu, Seiki;
Hayashi, Hideyuki;
Yokoyama, Shigeyuki

Publication type:

Article

X-ray structural and simulation analysis of a protein mutant: The value of a combined approach.

Published in:

Proteins, 2004, v. 55, n. 3, p. 733, doi. 10.1002/prot.20031

By:

Mattos, Carla;
Cohen, Justin D.;
Green, David F.;
Tidor, Bruce;
Karplus, Martin

Publication type:

Article

Investigation of glucose binding sites on insulin.

Published in:

Proteins, 2004, v. 55, n. 3, p. 568, doi. 10.1002/prot.20071

By:

Zoete, Vincent;
Meuwly, Markus;
Karplus, Martin

Publication type:

Article

Discrimination of single amino acid mutations of the p53 protein by means of deterministic singularities of recurrence quantification analysis.

Published in:

Proteins, 2004, v. 55, n. 3, p. 743, doi. 10.1002/prot.20075

By:

Porrello, Alessandro;
Soddu, Silvia;
Zbilut, Joseph P.;
Crescenzi, Marco;
Giuliani, Alessandro

Publication type:

Article

The 1.59 Å resolution crystal structure of TM0096, a flavin mononucleotide binding protein from Thermotoga maritima.

Published in:

Proteins, 2004, v. 55, n. 3, p. 772, doi. 10.1002/prot.20086

By:

Park, Frances;
Gajiwala, Ketan;
Noland, Brian;
Wu, Lydia;
He, Dongmei;
Molinari, Janessa;
Loomis, Kim;
Pagarigan, Barbra;
Kearins, Peggy;
Christopher, Jon;
Peat, Tom;
Badger, John;
Hendle, Jorg;
Lin, Johann;
Buchanan, Sean

Publication type:

Article

Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8.

Published in:

Proteins, 2004, v. 55, n. 3, p. 778, doi. 10.1002/prot.20122

By:

Wada, Takashi;
Shirouzu, Mikako;
Terada, Takaho;
Kamewari, Yuki;
Park, Sam-Yong;
Tame, Jeremy R.H.;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki

Publication type:

Article

NrdH-redoxin of Corynebacterium ammoniagenes forms a domain-swapped dimer.

Published in:

Proteins, 2004, v. 55, n. 3, p. 613, doi. 10.1002/prot.20126

By:

Stehr, Matthias;
Lindqvist, Ylva

Publication type:

Article

Distinguish protein decoys by Using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model.

Published in:

Proteins, 2004, v. 55, n. 3, p. 620, doi. 10.1002/prot.10470

By:

Lee, Mathew C.;
Duan, Yong

Publication type:

Article

The low barrier hydrogen bond (LBHB) proposal revisited: The case of the Asp ··· His pair in serine proteases.

Published in:

Proteins, 2004, v. 55, n. 3, p. 711, doi. 10.1002/prot.20096

By:

Schutz, Claudia N.;
Warshel, Arieh

Publication type:

Article

Is histoaspartic protease a serine protease with a pepsin-like fold?

Published in:

Proteins, 2004, v. 55, n. 3, p. 705, doi. 10.1002/prot.20078

By:

Andreeva, N.;
Bogdanovich, P.;
Kashparov, I.;
Popov, M.;
Stengach, M.

Publication type:

Article

NMR structure of the hypothetical protein NMA1147 from Neisseria meningitidis Reveals a distinct 5-helix bundle.

Published in:

Proteins, 2004, v. 55, n. 3, p. 756, doi. 10.1002/prot.20009

By:

Liu, Gaohua;
Sukumaran, Dinesh K.;
Xu, Duanxiang;
Chiang, Yiwen;
Acton, Thomas;
Goldsmith-Fischman, Sharon;
Honig, Barry;
Montelione, Gaetano T.;
Szyperski, Thomas

Publication type:

Article

Accurate and efficient description of protein vibrational dynamics: Comparing molecular dynamics and Gaussian models.

Published in:

Proteins, 2004, v. 55, n. 3, p. 635, doi. 10.1002/prot.20049

By:

Micheletti, Cristian;
Carloni, Paolo;
Maritan, Amos

Publication type:

Article

Crystal structure of Homo sapiens protein hp14.5.

Published in:

Proteins, 2004, v. 55, n. 3, p. 783, doi. 10.1002/prot.20188

By:

Manjasetty, Babu A.;
Delbrück, Heinrich;
Pham, Dinh-Trung;
Mueller, Uwe;
Fieber-Erdmann, Martin;
Scheich, Christoph;
Sievert, Volker;
Büssow, Konrad;
Niesen, Frank H.;
Weihofen, Wilhelm;
Loll, Bernhard;
Saenger, Wolfram;
Heinemann, Udo

Publication type:

Article

Modeling structurally variable regions in homologous proteins with rosetta.

Published in:

Proteins, 2004, v. 55, n. 3, p. 656, doi. 10.1002/prot.10629

By:

Rohl, Carol A.;
Strauss, Charlie E.M.;
Chivian, Dylan;
Baker, David

Publication type:

Article

Protein secondary structure assignment through Voronoï tessellation.

Published in:

Proteins, 2004, v. 55, n. 3, p. 519, doi. 10.1002/prot.10566

By:

Dupuis, Franck;
Sadoc, Jean-François;
Mornon, Jean-Paul

Publication type:

Article

Assessment of homology-based predictions in CASP5.

Published in:

Proteins, 2004, v. 55, n. 3, p. 782, doi. 10.1002/prot.20187

By:

Tramontano, Anna;
Morea, Veronica

Publication type:

Article

Unfolded state of polyalanine is a segmented polyproline II helix.

Published in:

Proteins, 2004, v. 55, n. 3, p. 493, doi. 10.1002/prot.20051

By:

Kentsis, Alex;
Mezei, Mihaly;
Gindin, Tatyana;
Osman, Roman

Publication type:

Article

DRESS: a database of REfined solution NMR structures.

Published in:

Proteins, 2004, v. 55, n. 3, p. 483, doi. 10.1002/prot.20118

By:

Nabuurs, Sander B.;
Nederveen, Aart J.;
Vranken, Wim;
Doreleijers, Jurgen F.;
Bonvin, Alexandre M.J.J.;
Vuister, Geerten W.;
Vriend, Gert;
Spronk, Christian A.E.M.

Publication type:

Article

CHOP proteins into structural domain-like fragments.

Published in:

Proteins, 2004, v. 55, n. 3, p. 678, doi. 10.1002/prot.20095

By:

Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

Folding of β/α-unit scrambled forms of S. cerevisiae triosephosphate isomerase: Evidence for autonomy of substructure formation and plasticity of hydrophobic and hydrogen bonding interactions in core of (β/α)<sub>8</sub>-barrel

Published in:

Proteins, 2004, v. 55, n. 3, p. 548, doi. 10.1002/prot.20066

By:

Shukla, Anshuman;
Guptasarma, Purnananda

Publication type:

Article

Evaluation of local structure alphabets based on residue burial.

Published in:

Proteins, 2004, v. 55, n. 3, p. 508, doi. 10.1002/prot.20008

By:

Karchin, Rachel;
Cline, Melissa;
Karplus, Kevin

Publication type:

Article