Works matching IS 08873585 AND DT 2004 AND VI 55 AND IP 2

Results: 25

High-resolution prediction of protein helix positions and orientations.

Published in:

Proteins, 2004, v. 55, n. 2, p. 368, doi. 10.1002/prot.20014

By:

Li, Xin;
Jacobson, Matthew P.;
Friesner, Richard A.

Publication type:

Article

Melittin as model system for probing interactions between proteins and cyclodextrins.

Published in:

Proteins, 2004, v. 55, n. 2, p. 275, doi. 10.1002/prot.20036

By:

Khajehpour, Mazdak;
Troxler, Thomas;
Nanda, Vikas;
Vanderkooi, Jane M.

Publication type:

Article

A novel method of resistance for influenza against a channel-blocking antiviral drug.

Published in:

Proteins, 2004, v. 55, n. 2, p. 251, doi. 10.1002/prot.20018

By:

Astrahan, Peleg;
Kass, Itamar;
Cooper, Matthew A.;
Arkin, Isaiah T.

Publication type:

Article

Identification of protons position in acid-base enzyme catalyzed reactions: The hepatitis C viral NS3 protease.

Published in:

Proteins, 2004, v. 55, n. 2, p. 245, doi. 10.1002/prot.20058

By:

Shokhen, Michael;
Albeck, Amnon

Publication type:

Article

The extended left-handed helix: A simple nucleic acid-binding motif.

Published in:

Proteins, 2004, v. 55, n. 2, p. 330, doi. 10.1002/prot.10630

By:

Hicks, Joshua M.;
Hsu, Victor L.

Publication type:

Article

Improving the tolerance of a protein a analogue to repeated alkaline exposures using a bypass mutagenesis approach.

Published in:

Proteins, 2004, v. 55, n. 2, p. 407, doi. 10.1002/prot.10616

By:

Linhult, Martin;
Gülich, Susanne;
Gräslund, Torbjörn;
Simon, Annelie;
Karlsson, Martin;
Sjöberg, Anna;
Nord, Karin;
Hober, Sophia

Publication type:

Article

Temperature dependence of the free energy landscape of the src-SH3 protein domain.

Published in:

Proteins, 2004, v. 55, n. 2, p. 395, doi. 10.1002/prot.20053

By:

Guo, Weihua;
Lampoudi, Sotiria;
Shea, Joan-Emma

Publication type:

Article

Expanded turn conformations: Characterization and sequence-structure correspondence in α-turns with implications in helix folding.

Published in:

Proteins, 2004, v. 55, n. 2, p. 305, doi. 10.1002/prot.20064

By:

Dasgupta, Bhaskar;
Pal, Lipika;
Basu, Gautam;
Chakrabarti, Pinak

Publication type:

Article

GEMDOCK: A generic evolutionary method for molecular docking.

Published in:

Proteins, 2004, v. 55, n. 2, p. 288, doi. 10.1002/prot.20035

By:

Yang, Jinn-Moon;
Chen, Chun-Chen

Publication type:

Article

Characterization of Arabidopsis thaliana stellacyanin: A comparison with umecyanin.

Published in:

Proteins, 2004, v. 55, n. 2, p. 426, doi. 10.1002/prot.20017

By:

Harrison, Mark D.;
Dennison, Christopher

Publication type:

Article

Crystal structure of a phosphotransacetylase from Streptococcus pyogenes.

Published in:

Proteins, 2004, v. 55, n. 2, p. 479, doi. 10.1002/prot.20039

By:

Xu, Qian Steven;
Shin, Dong-Hae;
Pufan, Ramona;
Yokota, Hisao;
Kim, Rosalind;
Kim, Sung-Hou

Publication type:

Article

Two histidines of the coat protein of turnip yellow mosaic virus at the capsid interior are crucial for viability.

Published in:

Proteins, 2004, v. 55, n. 2, p. 236, doi. 10.1002/prot.10600

By:

Bink, Hugo H. J.;
Roepan, Shalendra K.;
Pleij, Cornelis W. A.

Publication type:

Article

Identification of structural proteins from shrimp white spot syndrome virus (WSSV) by 2DE-MS.

Published in:

Proteins, 2004, v. 55, n. 2, p. 229, doi. 10.1002/prot.10640

By:

Zhang, Xiaobo;
Huang, Canhua;
Tang, Xuhua;
Zhuang, Ying;
Hew, Choy Leong

Publication type:

Article

Different propensity to form amyloid fibrils by two homologous proteins-Human stefins A and B: Searching for an explanation.

Published in:

Proteins, 2004, v. 55, n. 2, p. 417, doi. 10.1002/prot.20041

By:

Jenko, Saša;
Škarabot, Miha;
Kenig, Manca;
Gunčar, Gregor;
Muševič, Igor;
Turk, Dušan;
Žerovnik, Eva

Publication type:

Article

Locating the stabilizing residues in (α/β)<sub>8</sub> barrel proteins based on hydrophobicity, long-range interactions, and sequence conservation.

Published in:

Proteins, 2004, v. 55, n. 2, p. 316, doi. 10.1002/prot.20052

By:

Gromiha, M. Michael;
Pujadas, Gerard;
Magyar, Csaba;
Selvaraj, Samuel;
Simon, Istvan

Publication type:

Article

Crystal structure of a phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77-Å resolution.

Published in:

Proteins, 2004, v. 55, n. 2, p. 474, doi. 10.1002/prot.20023

By:

Schwarzenbacher, Robert;
Jaroszewski, Lukasz;
von Delft, Frank;
Abdubek, Polat;
Ambing, Eileen;
Biorac, Tanya;
Brinen, Linda S.;
Canaves, Jaume M.;
Cambell, Jamison;
Chiu, Hsiu-Ju;
Dai, Xiaoping;
Deacon, Ashley M.;
DiDonato, Mike;
Elsliger, Marc-André;
Eshagi, Said;
Floyd, Ross;
Godzik, Adam;
Grittini, Carina;
Grzechnik, Slawomir K.;
Hampton, Eric

Publication type:

Article

Data-based model and parameter evaluation in dynamic transcriptional regulatory networks.

Published in:

Proteins, 2004, v. 55, n. 2, p. 339, doi. 10.1002/prot.20056

By:

Cavelier, German;
Anastassiou, Dimitris

Publication type:

Article

The mechanism of proton exclusion in aquaporin channels.

Published in:

Proteins, 2004, v. 55, n. 2, p. 223, doi. 10.1002/prot.20038

By:

Ilan, Boaz;
Tajkhorshid, Emad;
Schulten, Klaus;
Voth, Gregory A.

Publication type:

Article

Why are both ends of the polypeptide chain on the outside of proteins?

Published in:

Proteins, 2004, v. 55, n. 2, p. 219, doi. 10.1002/prot.20011

By:

Hovmöller, Sven;
Zhou, Tuping

Publication type:

Article

Exploring protein native states and large-scale conformational changes with a modified generalized born model.

Published in:

Proteins, 2004, v. 55, n. 2, p. 383, doi. 10.1002/prot.20033

By:

Onufriev, Alexey;
Bashford, Donald;
Case, David A.

Publication type:

Article

Microbial genomes have over 72% structure assignment by the threading algorithm PROSPECTOR_Q.

Published in:

Proteins, 2004, v. 55, n. 2, p. 464, doi. 10.1002/prot.20044

By:

Kihara, Daisuke;
Skolnick, Jeffrey

Publication type:

Article

Analysis of CDK2 active-site hydration: A method to design new inhibitors.

Published in:

Proteins, 2004, v. 55, n. 2, p. 258, doi. 10.1002/prot.20026

By:

Kříž, Zdeněk;
Otyepka, Michal;
Bártová, Iveta;
Koča, Jaroslav

Publication type:

Article

A hierarchical approach to all-atom protein loop prediction.

Published in:

Proteins, 2004, v. 55, n. 2, p. 351, doi. 10.1002/prot.10613

By:

Jacobson, Matthew P.;
Pincus, David L.;
Rapp, Chaya S.;
Day, Tyler J.F.;
Honig, Barry;
Shaw, David E.;
Friesner, Richard A.

Publication type:

Article

A method using active-site sequence conservation to find functional shifts in protein families: Application to the enzymes of central metabolism, leading to the identification of an anomalous isocitrate dehydrogenase in pathogens.

Published in:

Proteins, 2004, v. 55, n. 2, p. 455, doi. 10.1002/prot.10639

By:

Das, Rajdeep;
Gerstein, Mark

Publication type:

Article

Progressive combinatorial algorithm for multiple structural alignments: Application to distantly related proteins.

Published in:

Proteins, 2004, v. 55, n. 2, p. 436, doi. 10.1002/prot.10587

By:

Ochagavía, María Elena;
Wodak, Shoshana

Publication type:

Article