Works matching IS 08873585 AND DT 2003 AND VI 53 AND IP S6

Results: 30

3DS3 and 3DS5 3D-SHOTGUN meta-predictors in CAFASP3.

Published in:

Proteins, 2003, v. 53, n. S6, p. 517, doi. 10.1002/prot.10537

By:

Fischer, Daniel

Publication type:

Article

Application of 3D-Jury, GRDB, and Verify3D in fold recognition.

Published in:

Proteins, 2003, v. 53, n. S6, p. 418, doi. 10.1002/prot.10547

By:

Grotthuss, Marcin von;
Pas, Jakub;
Wyrwicz, Lucjan;
Ginalski, Krzysztof;
Rychlewski, Leszek

Publication type:

Article

Modeling three-dimensional protein structures for CASP5 using the 3D-SHOTGUN meta-predictors.

Published in:

Proteins, 2003, v. 53, n. S6, p. 389, doi. 10.1002/prot.10544

By:

Sasson, Iris;
Fischer, Daniel

Publication type:

Article

CASP5 target classification.

Published in:

Proteins, 2003, v. 53, n. S6, p. 340, doi. 10.1002/prot.10555

By:

Kinch, Lisa N.;
Qi, Yuan;
Hubbard, Tim J. P.;
Grishin, Nick V.

Publication type:

Article

Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller.

Published in:

Proteins, 2003, v. 53, n. S6, p. 534, doi. 10.1002/prot.10536

By:

Wallner, Björn;
Fang, Huisheng;
Elofsson, Arne

Publication type:

Article

Evaluation of disorder predictions in CASP5.

Published in:

Proteins, 2003, v. 53, n. S6, p. 561, doi. 10.1002/prot.10533

By:

Melamud, Eugene;
Moult, John

Publication type:

Article

Predicting intrinsic disorder from amino acid sequence.

Published in:

Proteins, 2003, v. 53, n. S6, p. 566, doi. 10.1002/prot.10532

By:

Obradovic, Zoran;
Peng, Kang;
Vucetic, Slobodan;
Radivojac, Predrag;
Brown, Celeste J.;
Dunker, A. Keith

Publication type:

Article

Assembling novel protein folds from super-secondary structural fragments.

Published in:

Proteins, 2003, v. 53, n. S6, p. 480, doi. 10.1002/prot.10542

By:

Jones, David T.;
McGuffin, Liam J.

Publication type:

Article

Automated prediction of CASP-5 structures using the Robetta server.

Published in:

Proteins, 2003, v. 53, n. S6, p. 524, doi. 10.1002/prot.10529

By:

Chivian, Dylan;
Kim, David E.;
Malmström, Lars;
Bradley, Philip;
Robertson, Timothy;
Murphy, Paul;
Strauss, Charles E.M.;
Bonneau, Richard;
Rohl, Carol A.;
Baker, David

Publication type:

Article

Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment.

Published in:

Proteins, 2003, v. 53, n. S6, p. 410, doi. 10.1002/prot.10548

By:

Ginalski, Krzysztof;
Rychlewski, Leszek

Publication type:

Article

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling.

Published in:

Proteins, 2003, v. 53, n. S6, p. 430, doi. 10.1002/prot.10550

By:

Petrey, Donald;
Xiang, Zhexin;
Tang, Christopher L.;
Xie, Lei;
Gimpelev, Marina;
Mitros, Therese;
Soto, Cinque S.;
Goldsmith-Fischman, Sharon;
Kernytsky, Andrew;
Schlessinger, Avner;
Koh, Ingrid Y.Y.;
Alexov, Emil;
Honig, Barry

Publication type:

Article

Assessment of RAPTOR's linear programming approach in CAFASP3.

Published in:

Proteins, 2003, v. 53, n. S6, p. 579, doi. 10.1002/prot.10531

By:

Xu, Jinbo;
Li, Ming

Publication type:

Article

Assessment of homology-based predictions in CASP5.

Published in:

Proteins, 2003, v. 53, n. S6, p. 352, doi. 10.1002/prot.10543

By:

Tramontano, Anna;
Morea, Veronica

Publication type:

Article

LiveBench-6: Large-scale automated evaluation of protein structure prediction servers.

Published in:

Proteins, 2003, v. 53, n. S6, p. 542, doi. 10.1002/prot.10535

By:

Rychlewski, Leszek;
Fischer, Daniel;
Elofsson, Arne

Publication type:

Article

Prediction of protein structure by emphasizing local side-chain/backbone interactions in ensembles of turn fragments.

Published in:

Proteins, 2003, v. 53, n. S6, p. 486, doi. 10.1002/prot.10541

By:

Fang, Qiaojun;
Shortle, David

Publication type:

Article

CASP5 assessment of fold recognition target predictions.

Published in:

Proteins, 2003, v. 53, n. S6, p. 395, doi. 10.1002/prot.10557

By:

Kinch, Lisa N.;
Wrabl, James O.;
Krishna, S. Sri;
Majumdar, Indraneel;
Sadreyev, Ruslan I.;
Qi, Yuan;
Pei, Jimin;
Cheng, Hua;
Grishin, Nick V.

Publication type:

Article

Prediction of disordered regions in proteins from position specific score matrices.

Published in:

Proteins, 2003, v. 53, n. S6, p. 573, doi. 10.1002/prot.10528

By:

Jones, David T.;
Ward, Jonathan J.

Publication type:

Article

Predicting interresidue contacts using templates and pathways.

Published in:

Proteins, 2003, v. 53, n. S6, p. 497, doi. 10.1002/prot.10539

By:

Shao, Yu;
Bystroff, Christopher

Publication type:

Article

Assessment of progress over the CASP experiments.

Published in:

Proteins, 2003, v. 53, n. S6, p. 585, doi. 10.1002/prot.10530

By:

Venclovas, C̆eslovas;
Zemla, Adam;
Fidelis, Krzysztof;
Moult, John

Publication type:

Article

Predictions without templates: New folds, secondary structure, and contacts in CASP5.

Published in:

Proteins, 2003, v. 53, n. S6, p. 436, doi. 10.1002/prot.10546

By:

Aloy, Patrick;
Stark, Alexander;
Hadley, Caroline;
Russell, Robert B.

Publication type:

Article

Rosetta predictions in CASP5: Successes, failures, and prospects for complete automation.

Published in:

Proteins, 2003, v. 53, n. S6, p. 457, doi. 10.1002/prot.10552

By:

Bradley, Philip;
Chivian, Dylan;
Meiler, Jens;
Misura, Kira M.S.;
Rohl, Carol A.;
Schief, William R.;
Wedemeyer, William J.;
Schueler-Furman, Ora;
Murphy, Paul;
Schonbrun, Jack;
Strauss, Charles E.M.;
Baker, David

Publication type:

Article

CAFASP3 in the spotlight of EVA.

Published in:

Proteins, 2003, v. 53, n. S6, p. 548, doi. 10.1002/prot.10534

By:

Eyrich, Volker A.;
Przybylski, Dariusz;
Koh, Ingrid Y.Y.;
Grana, Osvaldo;
Pazos, Florencio;
Valencia, Alfonso;
Rost, Burkhard

Publication type:

Article

A 'FRankenstein's monster' approach to comparative modeling: Merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.

Published in:

Proteins, 2003, v. 53, n. S6, p. 369, doi. 10.1002/prot.10545

By:

Kosinski, Jan;
Cymerman, Iwona A.;
Feder, Marcin;
Kurowski, Michal A.;
Sasin, Joanna M.;
Bujnicki, Janusz M.

Publication type:

Article

Critical assessment of methods of protein structure prediction (CASP)-round V.

Published in:

Proteins, 2003, v. 53, n. S6, p. 334, doi. 10.1002/prot.10556

By:

Moult, John;
Fidelis, Krzysztof;
Zemla, Adam;
Hubbard, Tim

Publication type:

Article

CAFASP3: The third critical assessment of fully automated structure prediction methods.

Published in:

Proteins, 2003, v. 53, n. S6, p. 503, doi. 10.1002/prot.10538

By:

Fischer, Daniel;
Rychlewski, Leszek;
Dunbrack, Roland L.;
Ortiz, Angel R.;
Elofsson, Arne

Publication type:

Article

Novel use of a genetic algorithm for protein structure prediction: Searching template and sequence alignment space.

Published in:

Proteins, 2003, v. 53, n. S6, p. 424, doi. 10.1002/prot.10549

By:

Contreras-Moreira, Bruno;
Fitzjohn, Paul W.;
Offman, Marc;
Smith, Graham R.;
Bates, Paul A.

Publication type:

Article

Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

Published in:

Proteins, 2003, v. 53, n. S6, p. 491, doi. 10.1002/prot.10540

By:

Karplus, Kevin;
Karchin, Rachel;
Draper, Jenny;
Casper, Jonathan;
Mandel-Gutfreund, Yael;
Diekhans, Mark;
Hughey, Richard

Publication type:

Article

Fifth Meeting on the Critical Assessment of Techniques for Protein Structure Prediction.

Published in:

Proteins, 2003, v. 53, n. S6, p. 333, doi. 10.1002/prot.10580

By:

Lattman, Eaton E.

Publication type:

Article

TOUCHSTONE: A unified approach to protein structure prediction.

Published in:

Proteins, 2003, v. 53, n. S6, p. 469, doi. 10.1002/prot.10551

By:

Skolnick, Jeffrey;
Zhang, Yang;
Arakaki, Adrian K.;
Kolinski, Andrzej;
Boniecki, Michal;
Szilágyi, András;
Kihara, Daisuke

Publication type:

Article

Comparative modeling in CASP5: Progress is evident, but alignment errors remain a significant hindrance.

Published in:

Proteins, 2003, v. 53, n. S6, p. 380, doi. 10.1002/prot.10591

By:

Venclovas, Česlovas

Publication type:

Article