Works matching IS 08873585 AND DT 1999 AND VI 37 AND IP S3

Results: 30

Sustained performance of knowledge-based potentials in fold recognition.

Published in:

Proteins, 1999, v. 37, n. S3, p. 112, doi. 10.1002/(SICI)1097-0134(1999)37:3+<112::AID-PROT15>3.0.CO;2-R

By:

Domingues, Francisco S.;
Koppensteiner, Walter A.;
Jaritz, Markus;
Prlic, Andreas;
Weichenberger, Christian;
Wiederstein, Markus;
Floeckner, Hannes;
Lackner, Peter;
Sippl, Manfred J.

Publication type:

Article

Calculation of protein conformation by global optimization of a potential energy function.

Published in:

Proteins, 1999, v. 37, n. S3, p. 204, doi. 10.1002/(SICI)1097-0134(1999)37:3+<204::AID-PROT26>3.0.CO;2-F

By:

Lee, Jooyoung;
Liwo, Adam;
Ripoll, Daniel R.;
Pillardy, Jaroslaw;
Scheraga, Harold A.

Publication type:

Article

Third meeting on the critical assessment of techniques for protein structure prediction.

Published in:

Proteins, 1999, v. 37, n. S3, p. 1, doi. 10.1002/(SICI)1097-0134(1999)37:3+<1::AID-PROT1>3.0.CO;2-6

By:

Lattman, Eaton E.

Publication type:

Article

Fold recognition using sequence and secondary structure information.

Published in:

Proteins, 1999, v. 37, n. S3, p. 141, doi. 10.1002/(SICI)1097-0134(1999)37:3+<141::AID-PROT19>3.0.CO;2-F

By:

Koretke, Kristin K.;
Russell, Robert B.;
Copley, Richard R.;
Lupas, Andrei N.

Publication type:

Article

Processing and analysis of CASP3 protein structure predictions.

Published in:

Proteins, 1999, v. 37, n. S3, p. 22, doi. 10.1002/(SICI)1097-0134(1999)37:3+<22::AID-PROT5>3.0.CO;2-W

By:

Zemla, Adam;
Venclovas, Česlovas;
Moult, John;
Fidelis, Krzysztof

Publication type:

Article

Modeling three-dimensional protein structures for amino acid sequences of the CASP3 experiment using sequence-derived predictions.

Published in:

Proteins, 1999, v. 37, n. S3, p. 61, doi. 10.1002/(SICI)1097-0134(1999)37:3+<61::AID-PROT9>3.0.CO;2-9

By:

Fischer, Daniel

Publication type:

Article

Sequence to structure alignment in comparative modeling using PrISM.

Published in:

Proteins, 1999, v. 37, n. S3, p. 66, doi. 10.1002/(SICI)1097-0134(1999)37:3+<66::AID-PROT10>3.0.CO;2-K

By:

Yang, An-Suei;
Honig, Barry

Publication type:

Article

Ab initio protein structure prediction of CASP III targets using ROSETTA.

Published in:

Proteins, 1999, v. 37, n. S3, p. 171, doi. 10.1002/(SICI)1097-0134(1999)37:3+<171::AID-PROT21>3.0.CO;2-Z

By:

Simons, Kim T.;
Bonneau, Rich;
Ruczinski, Ingo;
Baker, David

Publication type:

Article

Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure.

Published in:

Proteins, 1999, v. 37, n. S3, p. 104, doi. 10.1002/(SICI)1097-0134(1999)37:3+<104::AID-PROT14>3.0.CO;2-P

By:

Jones, David T.;
Tress, Michael;
Bryson, Kevin;
Hadley, Caroline

Publication type:

Article

Prediction of protein structure: The problem of fold multiplicity.

Published in:

Proteins, 1999, v. 37, n. S3, p. 199, doi. 10.1002/(SICI)1097-0134(1999)37:3+<199::AID-PROT25>3.0.CO;2-Y

By:

Lomize, Andrei L.;
Pogozheva, Irina D.;
Mosberg, Henry I.

Publication type:

Article

Threading with explicit models for evolutionary conservation of structure and sequence.

Published in:

Proteins, 1999, v. 37, n. S3, p. 133, doi. 10.1002/(SICI)1097-0134(1999)37:3+<133::AID-PROT18>3.0.CO;2-D

By:

Panchenko, Anna;
Marchler-Bauer, Aron;
Bryant, Stephen H.

Publication type:

Article

An attempt to analyse progress in fold recognition from CASP1 to CASP3.

Published in:

Proteins, 1999, v. 37, n. S3, p. 226, doi. 10.1002/(SICI)1097-0134(1999)37:3+<226::AID-PROT29>3.0.CO;2-Z

By:

Sippl, Manfred J.;
Lackner, Peter;
Domingues, Francisco S.;
Koppensteiner, Walter A.

Publication type:

Article

RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions.

Published in:

Proteins, 1999, v. 37, n. S3, p. 15, doi. 10.1002/(SICI)1097-0134(1999)37:3+<15::AID-PROT4>3.0.CO;2-Z

By:

Hubbard, Tim J.P.

Publication type:

Article

An iterative structure-assisted approach to sequence alignment and comparative modeling.

Published in:

Proteins, 1999, v. 37, n. S3, p. 55, doi. 10.1002/(SICI)1097-0134(1999)37:3+<55::AID-PROT8>3.0.CO;2-B

By:

Burke, David F.;
Deane, Charlotte M.;
Nagarajaram, Hampapathalu A.;
Campillo, Nuria;
Martin-Martinez, Mercedes;
Mendes, Joaquim;
Molina, Franck;
Perry, Jeff;
Reddy, B.V.B.;
Soares, Claudio M.;
Steward, Robert E.;
Williams, Mark;
Carrondo, Maria Armenia;
Blundell, Tom L.;
Mizuguchi, Kenji

Publication type:

Article

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction.

Published in:

Proteins, 1999, v. 37, n. S3, p. 149, doi. 10.1002/(SICI)1097-0134(1999)37:3+<149::AID-PROT20>3.0.CO;2-H

By:

Orengo, C.A.;
Bray, J.E.;
Hubbard, T.;
LoConte, L.;
Sillitoe, I.

Publication type:

Article

Structure classification-based assessment of CASP3 predictions for the fold recognition targets.

Published in:

Proteins, 1999, v. 37, n. S3, p. 88, doi. 10.1002/(SICI)1097-0134(1999)37:3+<88::AID-PROT13>3.0.CO;2-3

By:

Murzin, Alexey G.

Publication type:

Article

Ab initio protein structure prediction using a combined hierarchical approach.

Published in:

Proteins, 1999, v. 37, n. S3, p. 194, doi. 10.1002/(SICI)1097-0134(1999)37:3+<194::AID-PROT24>3.0.CO;2-F

By:

Samudrala, Ram;
Xia, Yu;
Huang, Enoch;
Levitt, Michael

Publication type:

Article

Cooperative approach for the protein fold recognition.

Published in:

Proteins, 1999, v. 37, n. S3, p. 126, doi. 10.1002/(SICI)1097-0134(1999)37:3+<126::AID-PROT17>3.0.CO;2-8

By:

Ota, Motonori;
Kawabata, Takeshi;
Kinjo, Akira R.;
Nishikawa, Ken

Publication type:

Article

A measure of progress in fold recognition?

Published in:

Proteins, 1999, v. 37, n. S3, p. 218, doi. 10.1002/(SICI)1097-0134(1999)37:3+<218::AID-PROT28>3.0.CO;2-X

By:

Marchler-Bauer, Aron;
Bryant, Stephen H.

Publication type:

Article

Automated large scale evaluation of protein structure predictions.

Published in:

Proteins, 1999, v. 37, n. S3, p. 7, doi. 10.1002/(SICI)1097-0134(1999)37:3+<7::AID-PROT3>3.0.CO;2-V

By:

Lackner, Peter;
Koppensteiner, Walter A.;
Domingues, Francisco S.;
Sippl, Manfred J.

Publication type:

Article

Model building by comparison at CASP3: Using expert knowledge and computer automation.

Published in:

Proteins, 1999, v. 37, n. S3, p. 47, doi. 10.1002/(SICI)1097-0134(1999)37:3+<47::AID-PROT7>3.0.CO;2-F

By:

Bates, Paul A.;
Sternberg, Michael J.E.

Publication type:

Article

Some measures of comparative performance in the three CASPs.

Published in:

Proteins, 1999, v. 37, n. S3, p. 231, doi. 10.1002/(SICI)1097-0134(1999)37:3+<231::AID-PROT30>3.0.CO;2-1

By:

Venclovas, Česlovas;
Zemla, Adam;
Fidelis, Krzysztof;
Moult, John

Publication type:

Article

Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL.

Published in:

Proteins, 1999, v. 37, n. S3, p. 81, doi. 10.1002/(SICI)1097-0134(1999)37:3+<81::AID-PROT12>3.0.CO;2-R

By:

Dunbrack Jr., Roland L.

Publication type:

Article

Improved ab Initio predictions with a simplified, flexible geometry model.

Published in:

Proteins, 1999, v. 37, n. S3, p. 186, doi. 10.1002/(SICI)1097-0134(1999)37:3+<186::AID-PROT23>3.0.CO;2-D

By:

Osguthorpe, D.J.

Publication type:

Article

Predicting protein structure using only sequence information.

Published in:

Proteins, 1999, v. 37, n. S3, p. 121, doi. 10.1002/(SICI)1097-0134(1999)37:3+<121::AID-PROT16>3.0.CO;2-Q

By:

Karplus, Kevin;
Barrett, Christian;
Cline, Melissa;
Diekhans, Mark;
Grate, Leslie;
Hughey, Richard

Publication type:

Article

CAFASP-1: Critical assessment of fully automated structure prediction methods.

Published in:

Proteins, 1999, v. 37, n. S3, p. 209, doi. 10.1002/(SICI)1097-0134(1999)37:3+<209::AID-PROT27>3.0.CO;2-Y

By:

Fischer, Daniel;
Barret, Christian;
Bryson, Kevin;
Elofsson, Arne;
Godzik, Adam;
Jones, David;
Karplus, Kevin J.;
Kelley, Lawrence A.;
MacCallum, Robert M.;
Pawowski, Krzysztof;
Rost, Burkhard;
Rychlewski, Leszek;
Sternberg, Michael

Publication type:

Article

Critical assessment of methods of protein structure prediction (CASP): Round III.

Published in:

Proteins, 1999, v. 37, n. S3, p. 2, doi. 10.1002/(SICI)1097-0134(1999)37:3+<2::AID-PROT2>3.0.CO;2-2

By:

Moult, John;
Hubbard, Tim;
Fidelis, Krzysztof;
Pedersen, Jan T.

Publication type:

Article

CASP3 comparative modeling evaluation.

Published in:

Proteins, 1999, v. 37, n. S3, p. 30, doi. 10.1002/(SICI)1097-0134(1999)37:3+<30::AID-PROT6>3.0.CO;2-S

By:

Jones, T. Alwyn;
Kleywegt, Gerard J.

Publication type:

Article

Addressing the issue of sequence-to-structure alignments in comparative modeling of CASP3 target proteins.

Published in:

Proteins, 1999, v. 37, n. S3, p. 73, doi. 10.1002/(SICI)1097-0134(1999)37:3+<73::AID-PROT11>3.0.CO;2-P

By:

Venclovas, Česlovas;
Ginalski, Krzysztof;
Fidelis, Krzysztof

Publication type:

Article

Ab initio folding of proteins using restraints derived from evolutionary information.

Published in:

Proteins, 1999, v. 37, n. S3, p. 177, doi. 10.1002/(SICI)1097-0134(1999)37:3+<177::AID-PROT22>3.0.CO;2-E

By:

Ortiz, Angel R.;
Kolinski, Andrzej;
Rotkiewicz, Piotr;
Ilkowski, Bartosz;
Skolnick, Jeffrey

Publication type:

Article