Works in Journal of Biomolecular Structure & Dynamics, 2018, Vol 36, Issue 16

Results: 21

Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4182, doi. 10.1080/07391102.2017.1417911

By:

Sonawane, Kailas D.;
Kamble, Asmita S.;
Fandilolu, Prayagraj M.

Publication type:

Article

Prediction of zinc binding sites in proteins using sequence derived information.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4413, doi. 10.1080/07391102.2017.1417910

By:

Srivastava, Abhishikha;
Kumar, Manish

Publication type:

Article

Not all AMLETs are made equal: complexes of cow and camel α-lactalbumin with oleic acid show different structure and stability.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4405, doi. 10.1080/07391102.2017.1417163

By:

Breydo, Leonid;
Almehdar, Hussein A.;
El-Fakharany, Esmail M.;
Redwan, Elrashdy M.;
Uversky, Vladimir N.

Publication type:

Article

Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4392, doi. 10.1080/07391102.2017.1417162

By:

Timofeev, Vladimir I.;
Altukhov, Dmitry A.;
Talyzina, Anna A.;
Agapova, Yulia K.;
Vlaskina, Anna V.;
Korzhenevskiy, Dmitry A.;
Kleymenov, Sergey Yu.;
Bocharov, Eduard V.;
Rakitina, Tatiana V.

Publication type:

Article

On the relationship of anthranilic derivatives structure and the FXR (Farnesoid X receptor) agonist activity.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4378, doi. 10.1080/07391102.2017.1417161

By:

Kronenberger, Thales;
Windshügel, Björn;
Wrenger, Carsten;
Honorio, Kathia M.;
Maltarollo, Vinicius G.

Publication type:

Article

Modeling the full length HIV-1 Gag polyprotein reveals the role of its p6 subunit in viral maturation and the effect of non-cleavage site mutations in protease drug resistance.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4366, doi. 10.1080/07391102.2017.1417160

By:

Su, Chinh Tran-To;
Kwoh, Chee-Keong;
Verma, Chandra Shekhar;
Gan, Samuel Ken-En

Publication type:

Article

Molecular modeling and dynamic simulations of agglutinin-like family members from Candida albicans: New insights into potential targets for the treatment of candidiasis.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4352, doi. 10.1080/07391102.2017.1417159

By:

von Ranke, Natalia L.;
Bello, Murilo L.;
Cabral, Lucio M.;
Castro, Helena C.;
Rodrigues, Carlos R.

Publication type:

Article

Sequence fingerprints distinguish erroneous from correct predictions of intrinsically disordered protein regions.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4338, doi. 10.1080/07391102.2017.1415822

By:

Saravanan, Konda Mani;
Dunker, A. Keith;
Krishnaswamy, Sankaran

Publication type:

Article

Combined pharmacophore, virtual screening and molecular dynamics studies to identify Bruton's tyrosine kinase inhibitors.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4320, doi. 10.1080/07391102.2017.1415821

By:

Sakthivel, Seethalakshmi;
Habeeb, S.K.M.

Publication type:

Article

Unravelling novel congeners from acetyllysine mimicking ligand targeting a lysine acetyltransferase PCAF bromodomain.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4303, doi. 10.1080/07391102.2017.1415820

By:

Suryanarayanan, Venkatesan;
Singh, Sanjeev Kumar

Publication type:

Article

Understanding the interactions of different substrates with wild-type and mutant acylaminoacyl peptidase using molecular dynamics simulations.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4285, doi. 10.1080/07391102.2017.1414634

By:

Zhu, Jingxuan;
Wang, Yan;
Li, Xin;
Han, Weiwei;
Zhao, Li

Publication type:

Article

Antibiotics potentiating potential of catharanthine against superbug Pseudomonas aeruginosa.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4270, doi. 10.1080/07391102.2017.1413424

By:

Dwivedi, Gaurav Raj;
Tyagi, Rekha;
Sanchita;
Tripathi, Shubhandra;
Pati, Sanghamitra;
Srivastava, Santosh K.;
Darokar, Mahendra P.;
Sharma, Ashok

Publication type:

Article

Metal complexes of naphthoquinone based ligand: synthesis, characterization, protein binding, DNA binding/cleavage and cytotoxicity studies.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4170, doi. 10.1080/07391102.2017.1413423

By:

Kosiha, A.;
Parthiban, C.;
Ciattini, Samuele;
Chelazzi, Laura;
Elango, Kuppanagounder P.

Publication type:

Article

The inhibitory performance of flavonoid cyanidin-3-sambubiocide against H274Y mutation in H1N1 influenza virus.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4255, doi. 10.1080/07391102.2017.1413422

By:

Kannan, S.;
Kolandaivel, P.

Publication type:

Article

Loading efficacy and binding analysis of retinoids with milk proteins: a short review.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4246, doi. 10.1080/07391102.2017.1411833

By:

Agudelo, D.;
Bourassa, P.;
Bariyanga, J.;
Tajmir-Riahi, H.A.

Publication type:

Article

ROS-mediated heme degradation and cytotoxicity induced by iron nanoparticles: hemoglobin and lymphocyte cells as targets.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4235, doi. 10.1080/07391102.2017.1411832

By:

Mirzaei, Sepideh;
Hadadi, Zari;
Attar, Farnoosh;
Mousavi, Seyyedeh Elaheh;
Zargar, Seyed Shahaboddin;
Tajik, Aida;
Saboury, Ali Akbar;
Rezayat, Seyed Mahdi;
Falahati, Mojtaba

Publication type:

Article

Potential natural mTOR inhibitors screened by in silico approach and suppress hepatic stellate cells activation.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4220, doi. 10.1080/07391102.2017.1411295

By:

Thiyagarajan, Varadharajan;
Lee, Kuan-Wei;
Leong, Max K.;
Weng, Ching-Feng

Publication type:

Article

Folate receptor-targeted multimodal fluorescence mesosilica nanoparticles for imaging, delivery palladium complex and in vitro G-quadruplex DNA interaction.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4156, doi. 10.1080/07391102.2017.1411294

By:

Poshteh Shirani, Marziyeh;
Rezaei, Behzad;
Khayamian, Taghi;
Dinari, Mohammad;
Karami, Kazem;
Mehri-Lighvan, Zohreh;
Hosseini Shamili, Fazileh;
Ramazani, Mohammd;
Alibolandi, Mona

Publication type:

Article

In silico evaluation of the resistance of the T790M variant of epidermal growth factor receptor kinase to cancer drug Erlotinib.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4209, doi. 10.1080/07391102.2017.1411293

By:

Singh, Inderpal;
Singh, Shashank;
Verma, Vijeshwar;
Uversky, Vladimir N.;
Chandra, Ratna

Publication type:

Article

Computational and in vitro insights on snake venom phospholipase A2 inhibitor of phytocompound ikshusterol3-O-glucoside of Clematis gouriana Roxb. ex DC.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4197, doi. 10.1080/07391102.2017.1409653

By:

Muthusamy, Karthikeyan;
Chinnasamy, Sathishkumar;
Nagarajan, Subbiah;
Sivaraman, Thirunavukkarasu

Publication type:

Article

Structure-activity relationship on DNA binding and anticancer activities of a family of mixed-ligand oxidovanadium(V) hydrazone complexes.

Published in:

Journal of Biomolecular Structure & Dynamics, 2018, v. 36, n. 16, p. 4143, doi. 10.1080/07391102.2017.1409652

By:

Patra, Debashis;
Paul, Subhabrata;
Sepay, Nayim;
Kundu, Rita;
Ghosh, Tapas

Publication type:

Article

Works in Journal of Biomolecular Structure & Dynamics, 2018, Vol 36, Issue 16

Preferences of AAA/AAG codon recognition by modified nucleosides, τm<sup>5</sup>s<sup>2</sup>U<sub>34</sub> and t<sup>6</sup>A<sub>37</sub> present in tRNA<sup>Lys</sup>.

Prediction of zinc binding sites in proteins using sequence derived information.

Not all AMLETs are made equal: complexes of cow and camel α-lactalbumin with oleic acid show different structure and stability.

Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.

On the relationship of anthranilic derivatives structure and the FXR (Farnesoid X receptor) agonist activity.

Modeling the full length HIV-1 Gag polyprotein reveals the role of its p6 subunit in viral maturation and the effect of non-cleavage site mutations in protease drug resistance.

Molecular modeling and dynamic simulations of agglutinin-like family members from Candida albicans: New insights into potential targets for the treatment of candidiasis.

Sequence fingerprints distinguish erroneous from correct predictions of intrinsically disordered protein regions.

Combined pharmacophore, virtual screening and molecular dynamics studies to identify Bruton's tyrosine kinase inhibitors.

Unravelling novel congeners from acetyllysine mimicking ligand targeting a lysine acetyltransferase PCAF bromodomain.

Understanding the interactions of different substrates with wild-type and mutant acylaminoacyl peptidase using molecular dynamics simulations.

Antibiotics potentiating potential of catharanthine against superbug Pseudomonas aeruginosa.

Metal complexes of naphthoquinone based ligand: synthesis, characterization, protein binding, DNA binding/cleavage and cytotoxicity studies.

The inhibitory performance of flavonoid cyanidin-3-sambubiocide against H274Y mutation in H1N1 influenza virus.

Loading efficacy and binding analysis of retinoids with milk proteins: a short review.

ROS-mediated heme degradation and cytotoxicity induced by iron nanoparticles: hemoglobin and lymphocyte cells as targets.

Potential natural mTOR inhibitors screened by in silico approach and suppress hepatic stellate cells activation.

Folate receptor-targeted multimodal fluorescence mesosilica nanoparticles for imaging, delivery palladium complex and in vitro G-quadruplex DNA interaction.

In silico evaluation of the resistance of the T790M variant of epidermal growth factor receptor kinase to cancer drug Erlotinib.

Computational and in vitro insights on snake venom phospholipase A<sub>2</sub> inhibitor of phytocompound ikshusterol3-O-glucoside of Clematis gouriana Roxb. ex DC.

Structure-activity relationship on DNA binding and anticancer activities of a family of mixed-ligand oxidovanadium(V) hydrazone complexes.