Works in Molecular Biology & Evolution, 2005, Vol 22, Issue 3

Results: 47

Comparison of the Accuracies of Several Phylogenetic Methods Using Protein and DNA Sequences.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 792, doi. 10.1093/molbev/msi066

By:

Hall, Barry G.

Publication type:

Article

Impact of Taxon Sampling on the Estimation of Rates of Evolution at Sites.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 784, doi. 10.1093/molbev/msi065

By:

Blouin, C.;
Butt, D.;
Roger, A. J.

Publication type:

Article

Recurrent Recruitment of the THAP DNA-Binding Domain and Molecular Domestication of the P-Transposable Element.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 741, doi. 10.1093/molbev/msi064

By:

Quesneville, H.;
Nouaud, D.;
Anxolabehere, D.

Publication type:

Article

Naturally Occurring Transposable Elements Disrupt hsp70 Promoter Function in Drosophila melanogaster.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 776, doi. 10.1093/molbev/msi063

By:

Lerman, Daniel N.;
Feder, Martin E.

Publication type:

Article

Clusters of Co-expressed Genes in Mammalian Genomes Are Conserved by Natural Selection.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 767, doi. 10.1093/molbev/msi062

By:

Singer, Gregory A. C.;
Lloyd, Andrew T.;
Huminiecki, Lukasz B.;
Wolfe, Kenneth H.

Publication type:

Article

Degenerative Evolution and Functional Diversification of Type-III Secretion Systems in the Insect Endosymbiont Sodalis glossinidius.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 758, doi. 10.1093/molbev/msi061

By:

Dale, Colin;
Jones, Tait;
Pontes, Mauricio

Publication type:

Article

New Regulatory Regions of Drosophila 412 Retrotransposable Element Generated by Recombination.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 747, doi. 10.1093/molbev/msi060

By:

Mugnier, Nathalie;
Biémont, Christian;
Vieira, Cristina

Publication type:

Article

Fast Adaptive Coevolution of Nuclear and Mitochondrial Subunits of ATP Synthetase in Orangutan.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 716, doi. 10.1093/molbev/msi059

By:

Bayona-Bafaluy, Maria Pilar;
Müller, Stefan;
Moraes, Carlos T.

Publication type:

Article

Genomic Haplotype Blocks May Not Accurately Reflect Spatial Variation in Historic Recombination Intensity.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 735, doi. 10.1093/molbev/msi058

By:

Verhoeven, Koen J. F.;
Simonsen, Katy L.

Publication type:

Article

Survey of Simple Sequence Repeats in Completed Fungal Genomes.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 639, doi. 10.1093/molbev/msi057

By:

Karaoglu, Haydar;
Lee, Crystal Man Ying;
Meyer, Wieland

Publication type:

Article

Lack of Evidence for Horizontal Transfer of the lac Operon into Escherichia coli.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 683, doi. 10.1093/molbev/msi056

By:

Stoebel, Daniel M.

Publication type:

Article

Genetic Structure of Hmong-Mien Speaking Populations in East Asia as Revealed by mtDNA Lineages.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 725, doi. 10.1093/molbev/msi055

By:

Bo Wen;
Hui Li;
Song Gao;
Xianyun Mao;
Yang Gao;
Feng Li;
Feng Zhang;
Yungang He;
Yongli Dong;
Youjun Zhang;
Wenju Huang;
Jianzhong Jin;
Chunjie Xiao;
Daru Lu;
Ranajit Chakraborty;
Bing Su;
Ranjan Deka;
Li Jin

Publication type:

Article

Isolation and Characterization of Active LINE and SINEs from the Eel.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 673, doi. 10.1093/molbev/msi054

By:

Kajikawa, Masaki;
Ichiyanagi, Kenji;
Tanaka, Nozomu;
Okada, Norihiro

Publication type:

Article

A Universal Primer Set for PCR Amplification of Nuclear Histone H4 Genes from All Animal Species.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 582, doi. 10.1093/molbev/msi053

By:

Pineau, Pascal;
Henry, Michel;
Suspène, Rodolphe;
Marchio, Agnès;
Dettai, Agnès;
Debruyne, Régis;
Petit, Thierry;
Lécu, Alexis;
Moisson, Pierre;
Dejean, Anne;
Wain-Hobson, Simon;
Vartanian, Jean-Pierre

Publication type:

Article

Identification of a Giardia krr1 Homolog Gene and the Secondarily Anucleolate Condition of Giaridia lamblia.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 391, doi. 10.1093/molbev/msi052

By:

De-Dong Xin;
Jian-Fan Wen;
De He;
Si-Qi Lu

Publication type:

Article

Multidimensional Vector Space Representation for Convergent Evolution and Molecular Phylogeny.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 704, doi. 10.1093/molbev/msi051

By:

Kitazoe, Yasuhiro;
Kishino, Hirohisa;
Okabayashi, Takahisa;
Watabe, Teruaki;
Nakajima, Noriaki;
Okuhara, Yoshiyasu;
Kurihara, Yukio

Publication type:

Article

Accounting for Uncertainty in the Tree Topology Has Little Effect on the Decision-Theoretic Approach to Model Selection in Phylogeny Estimation.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 691, doi. 10.1093/molbev/msi050

By:

Abdo, Zaid;
Minin, Vladimir N.;
Joyce, Paul;
Sullivan, Jack

Publication type:

Article

Patterns of Diversifying Selection in the Phytotoxin-like scr74 Gene Family of Phytophthora infestans.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 659, doi. 10.1093/molbev/msi049

By:

Zhenyu Liu;
Bos, Jorunn I. B.;
Armstrong, Miles;
Whisson, Stephen C.;
Da Cunha, Luis;
Torto-Alalibo, Trudy;
Win, Joe;
Avrova, Anna O.;
Wright, Frank;
Birch, Paul R. J.;
Kamoun, Sophien

Publication type:

Article

Prediction of Site-Specific Amino Acid Distributions and Limits of Divergent Evolutionary Changes in Protein Sequences.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 630, doi. 10.1093/molbev/msi048

By:

Porto, 1 Markus;
Roman, H. Eduardo;
Vendruscolo, Michele;
Bastolla, Ugo

Publication type:

Article

Evolution of Duplicate Control Regions in the Mitochondrial Genomes of Metazoa: A Case Study with Australasian Ixodes Ticks.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 620, doi. 10.1093/molbev/msi047

By:

Shao, Renfu;
Barker, Stephen C.;
Mitani, Harumi;
Aoki, Yayoi;
Fukunaga, Masahito

Publication type:

Article

Identifying Signatures of Selection at the Enhancer of split Neurogenic Gene Complex in Drosophila.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 607, doi. 10.1093/molbev/msi046

By:

Macdonald, Stuart J.;
Long, Anthony D.

Publication type:

Article

Inverse Relationship Between Evolutionary Rate and Age of Mammalian Genes.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 598, doi. 10.1093/molbev/msi045

By:

Albà, M. Mar;
Castresana, Jose

Publication type:

Article

Genome-Wide Analysis of Core Cell Cycle Genes in the Unicellular Green Alga Ostreococcus tauri.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 589, doi. 10.1093/molbev/msi044

By:

Robbens, Steven;
Khadaroo, Basheer;
Camasses, Alain;
Derelle, Evelyne;
Ferraz, Conchita;
Inzé, Dirk;
Van de Peer, Yves;
Moreau, Hervé

Publication type:

Article

CpG Mutation Rates in the Human Genome Are Highly Dependent on Local GC Content.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 650, doi. 10.1093/molbev/msi043

By:

Fryxell, Karl J.;
Won-Jong Moon

Publication type:

Article

"Species" Radiations of Symbiotic Dinoflagellates in the Atlantic and Indo-Pacific Since the Miocene-Pliocene Transition.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 570, doi. 10.1093/molbev/msi042

By:

LaJeunesse, Todd C.

Publication type:

Article

The Influence of Mutation, Recombination, Population History, and Selection on Patterns of Genetic Diversity in Neisseria meningitidis.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 562, doi. 10.1093/molbev/msi041

By:

Jolley, K. A.;
Wilson, D. J.;
Kriz, P.;
Mcvean, G.;
Maiden, M. C. J.

Publication type:

Article

Codon Bias Signatures, Organization of Microorganisms in Codon Space, and Lifestyle.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 547, doi. 10.1093/molbev/msi040

By:

Carbone, A.;
Képès, F.;
Zinovyev, A.

Publication type:

Article

Molecular Clocks Do Not Support the Cambrian Explosion.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 387, doi. 10.1093/molbev/msi039

By:

Blair, Jaime E.;
Hedges, S. Blair

Publication type:

Article

Codon Volatility As an Indicator of Positive Selection: Data from Eukaryotic Genome Comparisons.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 542, doi. 10.1093/molbev/msi038

By:

Friedman, Robert;
Hughes, Austin L.

Publication type:

Article

Positive Selection in the Carbohydrate Recognition Domains of Sea Urchin Sperm Receptor for Egg Jelly (suREJ) Proteins.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 533, doi. 10.1093/molbev/msi037

By:

Mah, Silvia A.;
Swanson, Willie J.;
Vacquier, Victor D.

Publication type:

Article

Nonhomogeneous Model of Sequence Evolution Indicates Independent Origins of Primary Endosymbionts Within the Enterobacteriales (γ-Proteobacteria).

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 520, doi. 10.1093/molbev/msi036

By:

Herbeck, Joshua T.;
Degnan, Patrick H.;
Wernegreen, Jennifer J.

Publication type:

Article

Molecular Population Genetics and the Search for Adaptive Evolution in Plants.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 506, doi. 10.1093/molbev/msi035

By:

Wright, Stephen I.;
Gaut, Brandon S.

Publication type:

Article

Divergence Pattern of Duplicate Genes in Protein-Protein Interactions Follows the Power Law.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 501, doi. 10.1093/molbev/msi034

By:

Ze Zhang;
Luo, Z. W.;
Kishino, Hirohisa;
Kearsey, Mike J.

Publication type:

Article

The Comparative Method Rules! Codon Volatility Cannot Detect Positive Darwinian Selection Using a Single Genome Sequence.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 496, doi. 10.1093/molbev/msi033

By:

Dagan, Tal;
Graur, Dan

Publication type:

Article

A Bayesian Analysis of Metazoan Mitochondrial Genome Arrangements.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 486, doi. 10.1093/molbev/msi032

By:

Larget, Bret;
Simon, Donald L.;
Kadane, Joseph B.;
Sweet, Deborah

Publication type:

Article

A Genetic Algorithm Approach to Detecting Lineage-Specific Variation in Selection Pressure.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 478, doi. 10.1093/molbev/msi031

By:

Kosakovsky Pond, Sergei L.;
Frost, Simon D. W.

Publication type:

Article

The Cellular Retinol-Binding Protein Genes Are Duplicated and Differentially Transcribed in the Developing and Adult Zebrafish (Danio rerio).

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 469, doi. 10.1093/molbev/msi030

By:

Rong-Zong Liu;
Qian Sun;
Thisse, Christine;
Thisse, Bernard;
Wright, Jonathan M.;
Denovan-Wright, Eileen M.

Publication type:

Article

A Statistical Characterization of Consistent Patterns of Human Immunodeficiency Virus Evolution Within Infected Patients.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 456, doi. 10.1093/molbev/msi029

By:

Williamson, Scott;
Perry, Steven M.;
Bustamante, Carlos D.;
Orive, Maria E.;
Stearns, Miles N.;
Kelly, John K.

Publication type:

Article

Physicochemical Evolution and Molecular Adaptation of the Cetacean and Artiodactyl Cytochrome b Proteins.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 437, doi. 10.1093/molbev/msi028

By:

McClellan, D. A.;
Palfreyman, E. J.;
Smith, M. J.;
Moss, J. L.;
Christensen, R. G.;
Sailsbery, J. K.

Publication type:

Article

Evolution of Bitter Taste Receptors in Humans and Apes.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 432, doi. 10.1093/molbev/msi027

By:

Fischer, Anne;
Gilad, Yoav;
Man, Orna;
Pääbo, Svante

Publication type:

Article

How Strong Is the Mutagenicity of Recombination in Mammals?

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 426, doi. 10.1093/molbev/msi025

By:

Shiao-Wei Huang;
Robert Friedman;
Ning Yu;
Alex Yu;
Wen-Hsiung Li

Publication type:

Article

An Exponential Core in the Heart of the Yeast Protein Interaction Network.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 421, doi. 10.1093/molbev/msi024

By:

Pereira-Leal, José B.;
Audit, Benjamin;
Peregrin-Alvarez, José M.;
Ouzounis, Christos A.

Publication type:

Article

Root of the Eukaryota Tree as Inferred from Combined Maximum Likelihood Analyses of Multiple Molecular Sequence Data.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 409, doi. 10.1093/molbev/msi023

By:

Arisue, Nobuko;
Hasegawa, Masami;
Hashimoto, Tetsuo

Publication type:

Article

Selenoproteins and the Metabolic Features of the Archaeal Ancestor of Eukaryotes.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 383, doi. 10.1093/molbev/msi007

By:

Foster, Charles B.

Publication type:

Article

Comparative Analyses Reveal a Complex History of Molecular Evolution for Human MYH16.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 379, doi. 10.1093/molbev/msi004

By:

Perry, George H.;
Verrelli, Brian C.;
Stone, Anne C.

Publication type:

Article

Substitution Rates in a New Silene latifolia Sex-Linked Gene, SlssX/Y.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 402, doi. 10.1093/molbev/msi003

By:

Filatov, Dmitry A.

Publication type:

Article

Measuring the Fit of Sequence Data to Phylogenetic Model: Allowing for Missing Data.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 395, doi. 10.1093/molbev/msi002

By:

Waddell, Peter J.

Publication type:

Article