Works matching IS 03051048 AND DT 2025 AND VI 53 AND IP 5

Results: 73

Correction to 'DisProt in 2024: improving function annotation of intrinsically disordered proteins'.

Published in:: 2025
Publication type:: Correction Notice

Correction to 'RNPC1 modulates the RNA-binding activity of, and cooperates with, HuR to regulate p21 mRNA stability'.

Published in:: 2025
Publication type:: Correction Notice

Correction to 'WBSCR16 is Essential for Mitochondrial 16S rRNA Processing in Mammals'.

Published in:: 2025
Publication type:: Correction Notice

Editor's Note on 'A regulatory circuit comprising GATA1/2 switch and microRNA-27a/24 promotes erythropoiesis'.

Published in:: 2025
Publication type:: Correction Notice

Correction to 'Chromosomal integrons are genetically and functionally isolated units of genomes'.

Published in:: 2025
Publication type:: Correction Notice

Correction to 'Structural characterization of two prototypical repressors of SorC family reveals tetrameric assemblies on DNA and mechanism of function'.

Published in:: 2025
Publication type:: Correction Notice

Correction to 'iDog: a multi-omics resource for canids study'.

Published in:: Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf194
Publication type:: Article

Correction to 'Inhibition of HMGA2 binding to AT-rich DNA by its negatively charged C-terminus'.

Published in:: 2025
Publication type:: Correction Notice

A conserved thumb domain insertion in DNA polymerase epsilon supports processive DNA synthesis.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf190

By:

Ahmad, Sohail;
Zhang, Siying;
Meng, Xiangzhou

Publication type:

Article

Genetic dissection of MutL complexes in Arabidopsis meiosis.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf187

By:

Kbiri, Nadia;
Fernández-Jiménez, Nadia;
Dziegielewski, Wojciech;
Sáez-Zárate, Esperanza;
Pelé, Alexandre;
Mata-Villanueva, Ana;
Dluzewska, Julia;
Santos, Juan L;
Pradillo, Mónica;
Ziolkowski, Piotr A

Publication type:

Article

Correction 'LncPepAtlas: a comprehensive resource for exploring the translational landscape of long non-coding RNA'.

Published in:: 2025
Publication type:: Correction Notice

Correction to 'Functional redundancy in tRNA dihydrouridylation'.

Published in:: 2025
Publication type:: Correction Notice

Syn-tasiR-VIGS: virus-based targeted RNAi in plants by synthetic trans-acting small interfering RNAs derived from minimal precursors.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf183

By:

Cisneros, Adriana E;
Alarcia, Ana;
Llorens-Gámez, Juan José;
Puertes, Ana;
Juárez-Molina, María;
Primc, Anamarija;
Carbonell, Alberto

Publication type:

Article

VirBR counter-silences HppX3 to promote conjugation of bla<sub>NDM</sub>-IncX3 plasmids.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf182

By:

Gao, Yuan;
Xie, Ning;
Ma, Tengfei;
Tan, Chun E;
Wang, Zhuo;
Zhang, Rong;
Ma, Shizhen;
Deng, Zhaoju;
Wang, Yang;
Shen, Jianzhong

Publication type:

Article

Enhanced or reversible RNA N6-methyladenosine editing by red/far-red light induction.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf181

By:

Tang, Heng;
Han, Shaoqin;
Jie, Yang;
Jiang, Xin;
Zhang, Yi;
Peng, Junran;
Wang, Fang;
Li, Xiang;
Zhou, Xiang;
Jiang, Wei;
Weng, Xiaocheng

Publication type:

Article

Optimizing gRNA selection for high-penetrance F0 CRISPR screening for interrogating disease gene function.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf180

By:

Lin, Sheng-Jia;
Huang, Kevin;
Petree, Cassidy;
Qin, Wei;
Varshney, Pratishtha;
Varshney, Gaurav K

Publication type:

Article

Overlapping and distinct functions of SPT6, PNUTS, and PCF11 in regulating transcription termination.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf179

By:

Bejjani, Fabienne;
Ségéral, Emmanuel;
Mosca, Kevin;
Lecourieux, Adriana;
Bakail, May;
Hamoudi, Meriem;
Emiliani, Stéphane

Publication type:

Article

DNA damage response regulator ATR licenses PINK1-mediated mitophagy.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf178

By:

Marx, Christian;
Qing, Xiaobing;
Gong, Yamin;
Kirkpatrick, Joanna;
Siniuk, Kanstantsin;
Beznoussenko, Galina V;
Kidiyoor, Gururaj Rao;
Kirtay, Murat;
Buder, Katrin;
Koch, Philipp;
Westermann, Martin;
Bruhn, Christopher;
Brown, Eric J;
Xu, Xingzhi;
Foiani, Marco;
Wang, Zhao-Qi

Publication type:

Article

Rapid dynamics allow the low-abundance RTEL1 helicase to promote telomere replication.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf177

By:

Wu, Guanhui;
Taylor, Erin;
Youmans, Daniel T;
Arnoult, Nausica;
Cech, Thomas R

Publication type:

Article

Transcriptional mechanism by which IS5 activates the fucAO operon in Escherichia coli.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf172

By:

Zhou, Harry;
Zhang, Zhongge;
Velo, Juan;
Huo, Jialu;
Smith, Sofia;
Ho, Allyson;
Saier, Milton H

Publication type:

Article

Transcription factor VIB-1 activates catalase-3 expression by promoting PIC assembly in Neurospora crassa.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf174

By:

Liu, Huan;
Zhang, Qin;
Huang, Fusheng;
Shen, Shuangjie;
Altaf, Moater;
Wang, Ying;
Liu, Xiao;
He, Qun

Publication type:

Article

Imperfect G-quadruplex as an emerging candidate for transcriptional regulation.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf164

By:

Sarkar, Sunipa;
Tateishi-Karimata, Hisae;
Ohyama, Tatsuya;
Sugimoto, Naoki

Publication type:

Article

Checkpoint kinases regulate the circadian clock after DNA damage by influencing chromatin dynamics.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf162

By:

Yang, Yulin;
Duan, Zeyu;
Liu, Xiao-Lan;
Li, Zhanbiao;
Shen, Zhenghao;
Gong, Shimin;
Lu, Qiaojia;
Hu, Yue;
Song, Linhao;
Wang, Zeyu;
Cao, Xuemei;
Dang, Yunkun;
Wang, Linqi;
He, Qun;
Liu, Xiao

Publication type:

Article

Eukaryotic initiation factors eIF4F and eIF4B promote translation termination upon closed-loop formation.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf161

By:

Shuvalova, Ekaterina;
Shuvalov, Alexey;
Al Sheikh, Walaa;
Ivanov, Alexander V;
Biziaev, Nikita;
Egorova, Tatiana V;
Dmitriev, Sergey E;
Terenin, Ilya M;
Alkalaeva, Elena

Publication type:

Article

Small molecule inhibitors of hnRNPA2B1–RNA interactions reveal a predictable sorting of RNA subsets into extracellular vesicles.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf176

By:

Corsi, Jessica;
Semnani, Pouriya Sharbatian;
Peroni, Daniele;
Belli, Romina;
Morelli, Alessia;
Lassandro, Michelangelo;
Sidarovich, Viktoryia;
Adami, Valentina;
Valentini, Chiara;
Cavallerio, Paolo;
Grosskreutz, Julian;
Fabbiano, Fabrizio;
Grossmann, Dajana;
Hermann, Andreas;
Tell, Gianluca;
Basso, Manuela;
D'Agostino, Vito G

Publication type:

Article

In silico λ-dynamics predicts protein binding specificities to modified RNAs.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf166

By:

Angelo, Murphy;
Zhang, Wen;
Vilseck, Jonah Z;
Aoki, Scott T

Publication type:

Article

Deciphering the landscape of cis-acting sequences in natural yeast transcript leaders.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf165

By:

Akirtava, Christina;
May, Gemma E;
McManus, C Joel

Publication type:

Article

Systematic study of hybrid triplex topology and stability suggests a general triplex-mediated regulatory mechanism.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf170

By:

Genna, Vito;
Portella, Guillem;
Sala, Alba;
Terrazas, Montserrat;
Serrano-Chacón, Israel;
González, Javier;
Villegas, Núria;
Mateo, Lidia;
Castellazzi, Chiara;
Labrador, Mireia;
Aviño, Anna;
Hospital, Adam;
Gandioso, Albert;
Aloy, Patrick;
Brun-Heath, Isabelle;
Gonzalez, Carlos;
Eritja, Ramon;
Orozco, Modesto

Publication type:

Article

Amyloid-like DNA bridging: a new mode of DNA shaping.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf169

By:

Wien, Frank;
Gragera, Marcos;
Matsuo, Tatsuhito;
Moroy, Gautier;
Bueno-Carrasco, María Teresa;
Arranz, Rocío;
Cossa, Antoine;
Martel, Anne;
Bordallo, Heloisa N;
Rudić, Svemir;
Velez, Marisela;
van der Maarel, Johan R C;
Peters, Judith;
Arluison, Véronique

Publication type:

Article

APE1 condensation in nucleoli of non-cancer cells depends on rRNA transcription and forming G-quadruplex RNA structures.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf168

By:

Dall'Agnese, Giuseppe;
Hannett, Nancy M;
Overholt, Kalon J;
Platt, Jesse M;
Henninger, Jonathan E;
Marcos-Vidal, Asier;
Othman, Zahraa;
Salgado, Gilmar;
Antoniali, Giulia;
Tell, Gianluca

Publication type:

Article

RNA anchoring of Upf1 facilitates recruitment of Dcp2 in the NMD decapping complex.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf160

By:

Ruiz-Gutierrez, Nadia;
Dupas, Jeanne;
Auquier, Elvire;
Barbarin-Bocahu, Irène;
Gaudon-Plesse, Claudine;
Saveanu, Cosmin;
Graille, Marc;
Le Hir, Hervé

Publication type:

Article

Ribosome stalling-induced NIP5;1 mRNA decay triggers ARGONAUTE1-dependent transcription downregulation.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf159

By:

Tanaka, Mayuki;
Sotta, Naoyuki;
Duncan, Susan;
Chiba, Yukako;
Onouchi, Hitoshi;
Marée, Athanasius F M;
Naito, Satoshi;
Grieneisen, Verônica A;
Fujiwara, Toru

Publication type:

Article

stAI: a deep learning-based model for missing gene imputation and cell-type annotation of spatial transcriptomics.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf158

By:

Zou, Guangsheng;
Shen, Qunlun;
Li, Limin;
Zhang, Shuqin

Publication type:

Article

MutLγ enforces meiotic crossovers in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf157

By:

Durand, Stéphanie;
Lian, Qichao;
Solier, Victor;
Fernandes, Joiselle Blanche;
Mercier, Raphael

Publication type:

Article

Structural investigation of an RNA device that regulates PD-1 expression in mammalian cells.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf156

By:

Stagno, Jason R;
Deme, Justin C;
Dwivedi, Vibha;
Lee, Yun-Tzai;
Lee, Hyun Kyung;
Yu, Ping;
Chen, Szu-Yun;
Fan, Lixin;
Degenhardt, Maximilia F S;
Chari, Raj;
Young, Howard A;
Lea, Susan M;
Wang, Yun-Xing

Publication type:

Article

Zwitterionic DNA: enzymatic synthesis of hypermodified DNA bearing four different cationic substituents at all four nucleobases.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf155

By:

Kuprikova, Natalia;
Ondruš, Marek;
Bednárová, Lucie;
Kraus, Tomáš;
Slavětínská, Lenka Poštová;
Sýkorová, Veronika;
Hocek, Michal

Publication type:

Article

Transcriptome-wide mapping of N<sup>3</sup>-methylcytidine modification at single-base resolution.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf153

By:

Gao, Yunyi;
Hou, Jingyu;
Wei, Saisai;
Wu, Canlan;
Yan, Sujun;
Sheng, Jia;
Zhang, Jun;
Chen, Zhanghui;
Gao, Xiangwei

Publication type:

Article

DNAcycP2: improved estimation of intrinsic DNA cyclizability through data augmentation.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf145

By:

Kendall, Brody;
Jin, Chong;
Li, Keren;
Ruan, Feng;
Wang, Xiaozhong;
Wang, Ji-Ping

Publication type:

Article

Structural basis of TnsC oligomerization and transposase recruitment in type I-B CRISPR-associated transposons.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf149

By:

Finocchio, Giada;
Querques, Irma;
Chanez, Christelle;
Speichert, Katarzyna J;
Jinek, Martin

Publication type:

Article

Conformational reorganization and phase separation drive hyper-editing of ADR-2–ADBP-1 complex.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf148

By:

Mu, Jianqiang;
Wu, Cang;
Xu, Kaiming;
Liu, Xingang;
Fu, Yajuan;
Zhang, Zhen;
Yu, Jingwei;
Xue, Chenyang;
Wang, Zi;
Chen, Xinmeng;
Chen, Yanhong;
Ou, Guangshuo;
Liu, Zhongmin

Publication type:

Article

The mutational landscape of Bacillus subtilis conditional hypermutators shows how proofreading skews DNA polymerase error rates.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf147

By:

Tanneur, Ira;
Dervyn, Etienne;
Guérin, Cyprien;
Kon Kam King, Guillaume;
Jules, Matthieu;
Nicolas, Pierre

Publication type:

Article

Genome-wide transcriptional silencing and mRNA stabilization allow the coordinated expression of the meiotic program in mice.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf146

By:

Bellutti, Laura;
Chan Sock Peng, Edith;
Cluzet, Victoria;
Guerquin, Marie-Justine;
Rolland, Antoine;
Messiaen, Sébastien;
Llano, Elena;
Dereli, Ihsan;
Martini, Emmanuelle;
Tóth, Attila;
Pendás, Alberto M;
Chalmel, Frederic;
Livera, Gabriel

Publication type:

Article

Armadillo domain of ARID1A directly interacts with DNA-PKcs to couple chromatin remodeling with nonhomologous end joining (NHEJ) pathway.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf150

By:

Kanno, Shin-ichiro;
Kobayashi, Takayasu;
Watanabe, Reiko;
Kurimasa, Akihiro;
Tanaka, Kozo;
Yasui, Akira;
Ui, Ayako

Publication type:

Article

Chemical evolution of ASO-like DNAzymes for effective and extended gene silencing in cells.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf144

By:

Liu, Yingyu;
Zhang, Sheyu;
Zhang, Meiqi;
Liu, Xin;
Wu, Yashu;
Wu, Qin;
Chaput, John C;
Wang, Yajun

Publication type:

Article

Yeast poly(A)-binding protein (Pab1) controls translation initiation in vivo primarily by blocking mRNA decapping and decay.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf143

By:

Poonia, Poonam;
Valabhoju, Vishalini;
Li, Tianwei;
Iben, James;
Niu, Xiao;
Lin, Zhenguo;
Hinnebusch, Alan G

Publication type:

Article

Deletion of Xist repeat B disrupts cell cycle and asymmetric cell division through Usp9x hyperactivation in mice.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf142

By:

Liang, Mingming;
Zhang, Lichao;
Gong, Heng;
Yang, Li;
Wang, Haijun;
Song, Na;
Lai, Liangxue;
Xie, Wanhua;
Li, Zhanjun

Publication type:

Article

Fluorogenic oligonucleotide cleavage probes with a branched linker improve RNA detection.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf141

By:

Maru, Bruktawit;
Edinboro, Ayodele;
Katolik, Adam;
El-Khoury, Roberto;
Basran, Kaleena;
Wahba, Alexander S;
Damha, Masad J;
Luedtke, Nathan W;
McKeague, Maureen

Publication type:

Article

Decoding and reengineering the promoter specificity of T7-like RNA polymerases based on phage genome sequences.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf140

By:

Zhu, Jinwei;
Liu, Ziming;
Lou, Chunbo;
Chen, Quan;
Liu, Haiyan

Publication type:

Article

Quantification of subcellular RNA localization through direct detection of RNA oxidation.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf139

By:

Lo, Hei-Yong G;
Goering, Raeann;
Kocere, Agnese;
Lo, Joelle;
Pockalny, Megan C;
White, Laura K;
Ramirez, Haydee;
Martinez, Abraham;
Jacobson, Seth;
Spitale, Robert C;
Pearson, Chad G;
Resendiz, Marino J E;
Mosimann, Christian;
Taliaferro, J Matthew

Publication type:

Article

Deep learning-based cell-specific gene regulatory networks inferred from single-cell multiome data.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 5, p. 1, doi. 10.1093/nar/gkaf138

By:

Xu, Junlin;
Lu, Changcheng;
Jin, Shuting;
Meng, Yajie;
Fu, Xiangzheng;
Zeng, Xiangxiang;
Nussinov, Ruth;
Cheng, Feixiong

Publication type:

Article