Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 7

Results: 48

Correction to 'Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Mechanistic insights into the alternative ribosome recycling by HflXr'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'High fidelity DNA strand-separation is the major specificity determinant in DNA methyltransferase CcrM's catalytic mechanism'.

Published in:: 2024
Publication type:: Correction Notice

Engineering an Escherichia coli strain for production of long single-stranded DNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4098, doi. 10.1093/nar/gkae189

By:

Shen, Konlin;
Flood, Jake J;
Zhang, Zhihuizi;
Ha, Alvin;
Shy, Brian R;
Dueber, John E;
Douglas, Shawn M

Publication type:

Article

Uncovering the GacS-mediated role in evolutionary progression through trajectory reconstruction in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3856, doi. 10.1093/nar/gkae187

By:

Jiang, Bo;
Qiu, Huifang;
Lu, Chenghui;
Lu, Mingqi;
Li, Yuanhao;
Dai, Weijun

Publication type:

Article

Structural basis of how MGME1 processes DNA 5′ ends to maintain mitochondrial genome integrity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4067, doi. 10.1093/nar/gkae186

By:

Mao, Eric Y C;
Yen, Han-Yi;
Wu, Chyuan-Chuan

Publication type:

Article

An anticodon-sensing T-boxzyme generates the elongator nonproteinogenic aminoacyl-tRNA in situ of a custom-made translation system for incorporation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3938, doi. 10.1093/nar/gkae151

By:

Lu, Wei;
Terasaka, Naohiro;
Sakaguchi, Yuriko;
Suzuki, Takeo;
Suzuki, Tsutomu;
Suga, Hiroaki

Publication type:

Article

Exhaustive identification of genome-wide binding events of transcriptional regulators.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. e40, doi. 10.1093/nar/gkae180

By:

Nordin, Anna;
Pagella, Pierfrancesco;
Zambanini, Gianluca;
Cantù, Claudio

Publication type:

Article

An autocatalytic CRISPR-Cas amplification effect propelled by the LNA-modified split activators for DNA sensing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. e39, doi. 10.1093/nar/gkae176

By:

Sun, Ke;
Pu, Lei;
Chen, Chuan;
Chen, Mutian;
Li, Kaiju;
Li, Xinqiong;
Li, Huanqing;
Geng, Jia

Publication type:

Article

A circular RNA-gawky-chromatin regulatory axis modulates stress-induced transcription.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3702, doi. 10.1093/nar/gkae157

By:

Su, Rui;
Zhou, Min;
Lin, Jiamei;
Shan, Ge;
Huang, Chuan

Publication type:

Article

Determinant of m<sup>6</sup>A regional preference by transcriptional dynamics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3510, doi. 10.1093/nar/gkae169

By:

Wang, Yalan;
Wang, Shen;
Meng, Zhen;
Liu, Xiao-Min;
Mao, Yuanhui

Publication type:

Article

Comprehensive analysis of intramolecular G-quadruplex structures: furthering the understanding of their formalism.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3522, doi. 10.1093/nar/gkae182

By:

Farag, Marc;
Mouawad, Liliane

Publication type:

Article

DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3837, doi. 10.1093/nar/gkae164

By:

Raimer Young, Heather M;
Hou, Pei-Chi;
Bartosik, Anna R;
Atkin, Naomi D;
Wang, Lixin;
Wang, Zhenjia;
Ratan, Aakrosh;
Zang, Chongzhi;
Wang, Yuh-Hwa

Publication type:

Article

CRISPR in Nucleic Acids Research: the sequel.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3489, doi. 10.1093/nar/gkae159

By:

Sale, Julian E;
Stoddard, Barry L

Publication type:

Article

Expanding the flexibility of base editing for high-throughput genetic screens in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4079, doi. 10.1093/nar/gkae174

By:

Gawlitt, Sandra;
Collins, Scott P;
Yu, Yanying;
Blackman, Samuel A;
Barquist, Lars;
Beisel, Chase L

Publication type:

Article

Origin, evolution, and maintenance of gene-strand bias in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3493, doi. 10.1093/nar/gkae155

By:

Atre, Malhar;
Joshi, Bharat;
Babu, Jebin;
Sawant, Shabduli;
Sharma, Shreya;
Sankar, T Sabari

Publication type:

Article

Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3870, doi. 10.1093/nar/gkae168

By:

Afonin, Dmitry A;
Gerasimov, Evgeny S;
Škodová-Sveráková, Ingrid;
Záhonová, Kristína;
Gahura, Ondřej;
Albanaz, Amanda T S;
Myšková, Eva;
Bykova, Anastassia;
Paris, Zdeněk;
Lukeš, Julius;
Opperdoes, Fred R;
Horváth, Anton;
Zimmer, Sara L;
Yurchenko, Vyacheslav

Publication type:

Article

Characterisation and engineering of a thermophilic RNA ligase from Palaeococcus pacificus.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3924, doi. 10.1093/nar/gkae149

By:

Rousseau, Meghan;
Oulavallickal, Tifany;
Williamson, Adele;
Arcus, Vic;
Patrick, Wayne M;
Hicks, Joanna

Publication type:

Article

The repertoire and structure of adhesion GPCR transcript variants assembled from publicly available deep-sequenced human samples.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3823, doi. 10.1093/nar/gkae145

By:

Kuhn, Christina Katharina;
Stenzel, Udo;
Berndt, Sandra;
Liebscher, Ines;
Schöneberg, Torsten;
Horn, Susanne

Publication type:

Article

Mechanistic insights into the alternative ribosome recycling by HflXr.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4053, doi. 10.1093/nar/gkae128

By:

Seely, Savannah M;
Basu, Ritwika S;
Gagnon, Matthieu G

Publication type:

Article

Low-input and single-cell methods for Infinium DNA methylation BeadChips.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. e38, doi. 10.1093/nar/gkae127

By:

Lee, Sol Moe;
Loo, Christian E;
Prasasya, Rexxi D;
Bartolomei, Marisa S;
Kohli, Rahul M;
Zhou, Wanding

Publication type:

Article

Identification of G-quadruplex-interacting proteins in living cells using an artificial G4-targeting biotin ligase.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. e37, doi. 10.1093/nar/gkae126

By:

Lu, Ziang;
Xie, Shengjie;
Su, Haomiao;
Han, Shaoqing;
Huang, Haiyan;
Zhou, Xiang

Publication type:

Article

Symmetry-breaking malachite green as a near-infrared light-activated fluorogenic photosensitizer for RNA proximity labeling.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. e36, doi. 10.1093/nar/gkae125

By:

Li, Lan;
Han, Jinghua;
Lo, Hei-Yong G;
Tam, Winnie Wai Ling;
Jia, Han;
Tse, Edmund Chun Ming;
Taliaferro, J Matthew;
Li, Ying

Publication type:

Article

Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. e35, doi. 10.1093/nar/gkae120

By:

Berg, Kevin;
Lodha, Manivel;
Delazer, Isabel;
Bartosik, Karolina;
Garcia, Yilliam Cruz;
Hennig, Thomas;
Wolf, Elmar;
Dölken, Lars;
Lusser, Alexandra;
Prusty, Bhupesh K;
Erhard, Florian

Publication type:

Article

Communication between DNA and nucleotide binding sites facilitates stepping by the RecBCD helicase.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3911, doi. 10.1093/nar/gkae108

By:

Gaydar, Vera;
Zananiri, Rani;
Saied, Layla;
Dvir, Or;
Kaplan, Ariel;
Henn, Arnon

Publication type:

Article

Unfilled gaps by polβ lead to aberrant ligation by LIG1 at the downstream steps of base excision repair pathway.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3810, doi. 10.1093/nar/gkae104

By:

Gulkis, Mitchell;
Martinez, Ernesto;
Almohdar, Danah;
Çağlayan, Melike

Publication type:

Article

RPA interacts with Rad52 to promote meiotic crossover and noncrossover recombination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3794, doi. 10.1093/nar/gkae083

By:

Joo, Jeong H;
Hong, Soogil;
Higashide, Mika T;
Choi, Eui-Hwan;
Yoon, Seobin;
Lee, Min-Su;
Kang, Hyun Ah;
Shinohara, Akira;
Kleckner, Nancy;
Kim, Keun P

Publication type:

Article

Retention of the RNA ends provides the molecular memory for maintaining the activation of the Csm complex.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3896, doi. 10.1093/nar/gkae080

By:

Irmisch, Patrick;
Mogila, Irmantas;
Samatanga, Brighton;
Tamulaitis, Gintautas;
Seidel, Ralf

Publication type:

Article

Human CST complex restricts excessive PrimPol repriming upon UV induced replication stress by suppressing p21.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3778, doi. 10.1093/nar/gkae078

By:

Sang, Pau Biak;
Jaiswal, Rishi K;
Lyu, Xinxing;
Chai, Weihang

Publication type:

Article

Distinct functions for the paralogous RBM41 and U11/U12-65K proteins in the minor spliceosome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4037, doi. 10.1093/nar/gkae070

By:

Norppa, Antto J;
Chowdhury, Iftekhar;
van Rooijen, Laura E;
Ravantti, Janne J;
Snel, Berend;
Varjosalo, Markku;
Frilander, Mikko J

Publication type:

Article

Evolving precision: rRNA expansion segment 7S modulates translation velocity and accuracy in eukaryal ribosomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4021, doi. 10.1093/nar/gkae067

By:

Rauscher, Robert;
Eggers, Cristian;
Dimitrova-Paternoga, Lyudmila;
Shankar, Vaishnavi;
Rosina, Alessia;
Cristodero, Marina;
Paternoga, Helge;
Wilson, Daniel N;
Leidel, Sebastian A;
Polacek, Norbert

Publication type:

Article

Molecular basis of an atypical dsDNA 5mC/6mA bifunctional dioxygenase CcTet from Coprinopsis cinerea in catalyzing dsDNA 5mC demethylation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3886, doi. 10.1093/nar/gkae066

By:

Zhang, Lin;
Mu, Yajuan;
Li, Tingting;
Hu, Jingyan;
Lin, Houwen;
Zhang, Liang

Publication type:

Article

Rewiring of the epigenome and chromatin architecture by exogenously induced retinoic acid signaling during zebrafish embryonic development.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3682, doi. 10.1093/nar/gkae065

By:

Moreno-Oñate, Marta;
Gallardo-Fuentes, Lourdes;
Martínez-García, Pedro M;
Naranjo, Silvia;
Jiménez-Gancedo, Sandra;
Tena, Juan J;
Santos-Pereira, José M

Publication type:

Article

NUDT16 regulates CtIP PARylation to dictate homologous recombination repair.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3761, doi. 10.1093/nar/gkae064

By:

Zhang, Zhen;
Samsa, William E;
Gong, Zihua

Publication type:

Article

The levels of p53 govern the hierarchy of DNA damage tolerance pathway usage.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3740, doi. 10.1093/nar/gkae061

By:

Castaño, Bryan A;
Schorer, Sabrina;
Guo, Yitian;
Calzetta, Nicolás L;
Gottifredi, Vanesa;
Wiesmüller, Lisa;
Biber, Stephanie

Publication type:

Article

LSD1 controls a nuclear checkpoint in Wnt/β-Catenin signaling to regulate muscle stem cell self-renewal.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3667, doi. 10.1093/nar/gkae060

By:

Mouradian, Sandrine;
Cicciarello, Delia;
Lacoste, Nicolas;
Risson, Valérie;
Berretta, Francesca;
Le Grand, Fabien;
Rose, Nicolas;
Simonet, Thomas;
Schaeffer, Laurent;
Scionti, Isabella

Publication type:

Article

Tankyrase-1 regulates RBP-mediated mRNA turnover to promote muscle fiber formation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 4002, doi. 10.1093/nar/gkae059

By:

Mubaid, Souad;
Sanchez, Brenda Janice;
Algehani, Rinad A;
Skopenkova, Viktoriia;
Adjibade, Pauline;
Hall, Derek T;
Busque, Sandrine;
Lian, Xian Jin;
Ashour, Kholoud;
Tremblay, Anne-Marie K;
Carlile, Graeme;
Gagné, Jean-Philippe;
Diaz-Gaxiola, Andrea;
Khattak, Shahryar;
Di Marco, Sergio;
Thomas, David Y;
Poirier, Guy G;
Gallouzi, Imed-Eddine

Publication type:

Article

Tet-mediated DNA methylation dynamics affect chromosome organization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3654, doi. 10.1093/nar/gkae054

By:

Tian, Hao;
Luan, Pengfei;
Liu, Yaping;
Li, Guoqiang

Publication type:

Article

An evolutionarily conserved phosphoserine-arginine salt bridge in the interface between ribosomal proteins uS4 and uS5 regulates translational accuracy in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3989, doi. 10.1093/nar/gkae053

By:

Joshi, Kartikeya;
Luisi, Brooke;
Wunderlin, Grant;
Saleh, Sima;
Lilly, Anna;
Okusolubo, Temiloluwa;
Farabaugh, Philip J

Publication type:

Article

Extending MeCP2 interactome: canonical nucleosomal histones interact with MeCP2.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3636, doi. 10.1093/nar/gkae051

By:

Ortega-Alarcon, David;
Claveria-Gimeno, Rafael;
Vega, Sonia;
Kalani, Ladan;
Jorge-Torres, Olga C;
Esteller, Manel;
Ausio, Juan;
Abian, Olga;
Velazquez-Campoy, Adrian

Publication type:

Article

RAVER1 hinders lethal EMT and modulates miR/RISC activity by the control of alternative splicing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3971, doi. 10.1093/nar/gkae046

By:

Wedler, Alice;
Bley, Nadine;
Glaß, Markus;
Müller, Simon;
Rausch, Alexander;
Lederer, Marcell;
Urbainski, Julia;
Schian, Laura;
Obika, Kingsley-Benjamin;
Simon, Theresa;
Peters, Lara Meret;
Misiak, Claudia;
Fuchs, Tommy;
Köhn, Marcel;
Jacob, Roland;
Gutschner, Tony;
Ihling, Christian;
Sinz, Andrea;
Hüttelmaier, Stefan

Publication type:

Article

Ccq1 restrains Mre11-mediated degradation to distinguish short telomeres from double-strand breaks.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3722, doi. 10.1093/nar/gkae044

By:

Audry, Julien;
Zhang, Haitao;
Kerr, Carly;
Berkner, Kathleen L;
Runge, Kurt W

Publication type:

Article

Rat1 promotes premature transcription termination at R-loops.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3623, doi. 10.1093/nar/gkae033

By:

Mérida-Cerro, José Antonio;
Maraver-Cárdenas, Pablo;
Rondón, Ana G;
Aguilera, Andrés

Publication type:

Article

Genomic transcription factor binding site selection is edited by the chromatin remodeling factor CHD4.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3607, doi. 10.1093/nar/gkae025

By:

Saotome, Mika;
Poduval, Deepak B;
Grimm, Sara A;
Nagornyuk, Aerica;
Gunarathna, Sakuntha;
Shimbo, Takashi;
Wade, Paul A;
Takaku, Motoki

Publication type:

Article

Decoding the universal human chromatin landscape through teratoma-based profiling.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3589, doi. 10.1093/nar/gkae021

By:

Kidder, Benjamin L

Publication type:

Article

Genomic overview of INA-induced NPR1 targeting and transcriptional cascades in Arabidopsis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3572, doi. 10.1093/nar/gkae019

By:

Yun, Se-Hun;
Khan, Irfan Ullah;
Noh, Bosl;
Noh, Yoo-Sun

Publication type:

Article

A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in Fusobacterium nucleatum.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3950, doi. 10.1093/nar/gkae010

By:

Zhu, Yan;
Ponath, Falk;
Cosi, Valentina;
Vogel, Jörg

Publication type:

Article

A super minigene with a short promoter and truncated introns recapitulates essential features of transcription and splicing regulation of the SMN1 and SMN2 genes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 7, p. 3547, doi. 10.1093/nar/gkad1259

By:

Ottesen, Eric W;
Seo, Joonbae;
Luo, Diou;
Singh, Natalia N;
Singh, Ravindra N

Publication type:

Article