Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 4

Results: 42

Dimeric structures of DNA ATTTC repeats promoted by divalent cations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1591, doi. 10.1093/nar/gkae052

By:

Trajkovski, Marko;
Pastore, Annalisa;
Plavec, Janez

Publication type:

Article

Correction to 'Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Mapping the LINE1 ORF1 protein interactome reveals associated inhibitors of human retrotransposition'.

Published in:: 2024
Publication type:: Correction Notice

Flexible structural arrangement and DNA-binding properties of protein p6 from Bacillus subtillis phage φ29.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 2045, doi. 10.1093/nar/gkae041

By:

Alcorlo, Martín;
Luque-Ortega, Juan Román;
Gago, Federico;
Ortega, Alvaro;
Castellanos, Milagros;
Chacón, Pablo;
de Vega, Miguel;
Blanco, Luis;
Hermoso, José M;
Serrano, Manuel;
Rivas, Germán;
Hermoso, Juan A

Publication type:

Article

Extracellular G-quadruplexes and Z-DNA protect biofilms from DNase I, and G-quadruplexes form a DNAzyme with peroxidase activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1575, doi. 10.1093/nar/gkae034

By:

Minero, Gabriel Antonio Salvador;
Møllebjerg, Andreas;
Thiesen, Celine;
Johansen, Mikkel Illemann;
Jørgensen, Nis Pedersen;
Birkedal, Victoria;
Otzen, Daniel Erik;
Meyer, Rikke Louise

Publication type:

Article

Cooperativity between Cas9 and hyperactive AID establishes broad and diversifying mutational footprints in base editors.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 2078, doi. 10.1093/nar/gkae024

By:

Berríos, Kiara N;
Barka, Aleksia;
Gill, Jasleen;
Serrano, Juan C;
Bailer, Peter F;
Parker, Jared B;
Evitt, Niklaus H;
Gajula, Kiran S;
Shi, Junwei;
Kohli, Rahul M

Publication type:

Article

Single-cell evidence for plasmid addiction mediated by toxin–antitoxin systems.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1847, doi. 10.1093/nar/gkae018

By:

Fraikin, Nathan;
Van Melderen, Laurence

Publication type:

Article

CMC: Cancer miRNA Census – a list of cancer-related miRNA genes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1628, doi. 10.1093/nar/gkae017

By:

Suszynska, Malwina;
Machowska, Magdalena;
Fraszczyk, Eliza;
Michalczyk, Maciej;
Philips, Anna;
Galka-Marciniak, Paulina;
Kozlowski, Piotr

Publication type:

Article

Gene-to-gene coordinated regulation of transcription and alternative splicing by 3D chromatin remodeling upon NF-κB activation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1527, doi. 10.1093/nar/gkae015

By:

Marie, Paul;
Bazire, Matéo;
Ladet, Julien;
Ameur, Lamya Ben;
Chahar, Sanjay;
Fontrodona, Nicolas;
Sexton, Tom;
Auboeuf, Didier;
Bourgeois, Cyril F;
Mortreux, Franck

Publication type:

Article

Genomic profiling of six human somatic histone H1 variants denotes that H1X accumulates at recently incorporated transposable elements.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1793, doi. 10.1093/nar/gkae014

By:

Salinas-Pena, Mónica;
Serna-Pujol, Núria;
Jordan, Albert

Publication type:

Article

Optimizing sequence design strategies for perturbation MPRAs: a computational evaluation framework.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1613, doi. 10.1093/nar/gkae012

By:

Liu, Jiayi;
Ashuach, Tal;
Inoue, Fumitaka;
Ahituv, Nadav;
Yosef, Nir;
Kreimer, Anat

Publication type:

Article

Checkpoint activation by Spd1: a competition-based system relying on tandem disordered PCNA binding motifs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 2030, doi. 10.1093/nar/gkae011

By:

Olsen, Johan G;
Prestel, Andreas;
Kassem, Noah;
Broendum, Sebastian S;
Shamim, Hossain Mohammad;
Simonsen, Signe;
Grysbæk, Martin;
Mortensen, Josefine;
Rytkjær, Louise Lund;
Haxholm, Gitte W;
Marabini, Riccardo;
Holmberg, Christian;
Carr, Antony M;
Crehuet, Ramon;
Nielsen, Olaf;
Kragelund, Birthe B

Publication type:

Article

Visualizing DNA single- and double-strand breaks in the Flash comet assay by DNA polymerase-assisted end-labelling.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. e22, doi. 10.1093/nar/gkae009

By:

Bivehed, Erik;
Hellman, Björn;
Wenson, Leonie;
Stenerlöw, Bo;
Söderberg, Ola;
Heldin, Johan

Publication type:

Article

Multiple mechanisms activate GCN2 eIF2 kinase in response to diverse stress conditions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1830, doi. 10.1093/nar/gkae006

By:

Misra, Jagannath;
Carlson, Kenneth R;
Spandau, Dan F;
Wek, Ronald C

Publication type:

Article

To kill a microRNA: emerging concepts in target-directed microRNA degradation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1558, doi. 10.1093/nar/gkae003

By:

Buhagiar, Amber F;
Kleaveland, Benjamin

Publication type:

Article

Mutational profile of the regenerative process and de novo genome assembly of the planarian Schmidtea polychroa.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1779, doi. 10.1093/nar/gkad1250

By:

Póti, Ádám;
Szüts, Dávid;
Vermezovic, Jelena

Publication type:

Article

Improved detection and consistency of RNA-interacting proteomes using DIA SILAC.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. e21, doi. 10.1093/nar/gkad1249

By:

Tan, Thomas C J;
Spanos, Christos;
Tollervey, David

Publication type:

Article

Target DNA-dependent activation mechanism of the prokaryotic immune system SPARTA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 2012, doi. 10.1093/nar/gkad1248

By:

Finocchio, Giada;
Koopal, Balwina;
Potocnik, Ana;
Heijstek, Clint;
Westphal, Adrie H;
Jinek, Martin;
Swarts, Daan C

Publication type:

Article

Intein-based thermoregulated meganucleases for containment of genetic material.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 2066, doi. 10.1093/nar/gkad1247

By:

Foo, Gary W;
Leichthammer, Christopher D;
Saita, Ibrahim M;
Lukas, Nicholas D;
Batko, Izabela Z;
Heinrichs, David E;
Edgell, David R

Publication type:

Article

Less-is-more: selecting transcription factor binding regions informative for motif inference.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. e20, doi. 10.1093/nar/gkad1240

By:

Xu, Jinrui;
Gao, Jiahao;
Ni, Pengyu;
Gerstein, Mark

Publication type:

Article

The pAblo·pCasso self-curing vector toolset for unconstrained cytidine and adenine base-editing in Gram-negative bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. e19, doi. 10.1093/nar/gkad1236

By:

Kozaeva, Ekaterina;
Nielsen, Zacharias S;
Nieto-Domínguez, Manuel;
Nikel, Pablo I

Publication type:

Article

Discovery of novel microRNA mimic repressors of ribosome biogenesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1988, doi. 10.1093/nar/gkad1235

By:

Bryant, Carson J;
McCool, Mason A;
Rosado González, Gabriela T;
Abriola, Laura;
Surovtseva, Yulia V;
Baserga, Susan J

Publication type:

Article

Reconstructing DNA methylation maps of ancient populations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1602, doi. 10.1093/nar/gkad1232

By:

Barouch, Arielle;
Mathov, Yoav;
Meshorer, Eran;
Yakir, Benjamin;
Carmel, Liran

Publication type:

Article

Kaposi's sarcoma herpesvirus exploits the DNA damage response to circularize its genome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1814, doi. 10.1093/nar/gkad1224

By:

Li, Shijun;
Liu, Bing;
Tan, Min;
Juillard, Franceline;
Szymula, Agnieszka;
Álvarez, Ángel L;
Van Sciver, Nicholas;
George, Athira;
Ramachandran, Akshaya;
Raina, Komal;
Tumuluri, Vinayak Sadasivam;
Costa, Catarina N;
Simas, J Pedro;
Kaye, Kenneth M

Publication type:

Article

HMZDupFinder: a robust computational approach for detecting intragenic homozygous duplications from exome sequencing data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. e18, doi. 10.1093/nar/gkad1223

By:

Du, Haowei;
Dardas, Zain;
Jolly, Angad;
Grochowski, Christopher M;
Jhangiani, Shalini N;
Li, He;
Muzny, Donna;
Fatih, Jawid M;
Yesil, Gozde;
Elçioglu, Nursel H;
Gezdirici, Alper;
Marafi, Dana;
Pehlivan, Davut;
Calame, Daniel G;
Carvalho, Claudia M B;
Posey, Jennifer E;
Gambin, Tomasz;
Coban-Akdemir, Zeynep;
Lupski, James R

Publication type:

Article

Toxin release by conditional remodelling of ParDE1 from Mycobacterium tuberculosis leads to gyrase inhibition.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1909, doi. 10.1093/nar/gkad1220

By:

Beck, Izaak N;
Arrowsmith, Tom J;
Grobbelaar, Matthew J;
Bromley, Elizabeth H C;
Marles-Wright, Jon;
Blower, Tim R

Publication type:

Article

Conversion of the CG specific M.MpeI DNA methyltransferase into an enzyme predominantly methylating CCA and CCC sites.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1896, doi. 10.1093/nar/gkad1217

By:

Albert, Pál;
Varga, Bence;
Ferenc, Györgyi;
Kiss, Antal

Publication type:

Article

Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1878, doi. 10.1093/nar/gkad1210

By:

Ma, Yinliang;
Wang, Jiaxu;
He, Xingyi;
Liu, Yuhang;
Zhen, Shuo;
An, Lina;
Yang, Qian;
Niu, Fumin;
Wang, Hong;
An, Boran;
Tai, Xinyue;
Yan, Zhenzhen;
Wu, Chen;
Yang, Xiaoyun;
Liu, Xiuhua

Publication type:

Article

BG4 antibody can recognize telomeric G-quadruplexes harboring destabilizing base modifications and lesions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1763, doi. 10.1093/nar/gkad1209

By:

Johnson, Samuel A;
Paul, Tapas;
Sanford, Samantha L;
Schnable, Brittani L;
Detwiler, Ariana C;
Thosar, Sanjana A;
Van Houten, Bennett;
Myong, Sua;
Opresko, Patricia L

Publication type:

Article

The RNA helicase Dbp10 coordinates assembly factor association with PTC maturation during ribosome biogenesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1975, doi. 10.1093/nar/gkad1206

By:

Mitterer, Valentin;
Hamze, Hussein;
Kunowska, Natalia;
Stelzl, Ulrich;
Henras, Anthony K;
Hurt, Ed

Publication type:

Article

Rrm3 and Pif1 division of labor during replication through leading and lagging strand G-quadruplex.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1753, doi. 10.1093/nar/gkad1205

By:

Varon, Mor;
Dovrat, Daniel;
Heuzé, Jonathan;
Tsirkas, Ioannis;
Singh, Saurabh P;
Pasero, Philippe;
Galletto, Roberto;
Aharoni, Amir

Publication type:

Article

GPATCH4 regulates rRNA and snRNA 2′-O-methylation in both DHX15-dependent and DHX15-independent manners.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1953, doi. 10.1093/nar/gkad1202

By:

Kanwal, Nidhi;
Krogh, Nicolai;
Memet, Indira;
Lemus-Diaz, Nicolas;
Thomé, Chairini C;
Welp, Luisa M;
Mizi, Athanasia;
Hackert, Philipp;
Papantonis, Argyris;
Urlaub, Henning;
Nielsen, Henrik;
Bohnsack, Katherine E;
Bohnsack, Markus T

Publication type:

Article

Quantitative, titratable and high-throughput reporter assays to measure DNA double strand break repair activity in cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1736, doi. 10.1093/nar/gkad1196

By:

Rajendra, Eeson;
Grande, Diego;
Mason, Bethany;
Di Marcantonio, Daniela;
Armstrong, Lucy;
Hewitt, Graeme;
Elinati, Elias;
Galbiati, Alessandro;
Boulton, Simon J;
Heald, Robert A;
Smith, Graeme C M;
Robinson, Helen M R

Publication type:

Article

Analysis of cytosine deamination events in excision repair sequencing reads reveals mechanisms of incision site selection in NER.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1720, doi. 10.1093/nar/gkad1195

By:

Morledge-Hampton, Benjamin;
Kalyanaraman, Ananth;
Wyrick, John J

Publication type:

Article

Two-motif model illuminates DICER cleavage preferences.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1860, doi. 10.1093/nar/gkad1186

By:

Le, Cong Truc;
Nguyen, Trung Duc;
Nguyen, Tuan Anh

Publication type:

Article

Enhancer–promoter interactions can form independently of genomic distance and be functional across TAD boundaries.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1702, doi. 10.1093/nar/gkad1183

By:

Balasubramanian, Deevitha;
Borges Pinto, Pedro;
Grasso, Alexia;
Vincent, Séverine;
Tarayre, Hélène;
Lajoignie, Damien;
Ghavi-Helm, Yad

Publication type:

Article

The cysteine-rich domain in CENP-A chaperone Scm3<sup>HJURP</sup> ensures centromere targeting and kinetochore integrity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1688, doi. 10.1093/nar/gkad1182

By:

Folco, H Diego;
Xiao, Hua;
Wheeler, David;
Feng, Hanqiao;
Bai, Yawen;
Grewal, Shiv I S

Publication type:

Article

Single-molecule visualization of twin-supercoiled domains generated during transcription.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1677, doi. 10.1093/nar/gkad1181

By:

Janissen, Richard;
Barth, Roman;
Polinder, Minco;
van der Torre, Jaco;
Dekker, Cees

Publication type:

Article

A bromodomain-independent mechanism of gene regulation by the BET inhibitor JQ1: direct activation of nuclear receptor PXR.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1661, doi. 10.1093/nar/gkad1175

By:

Huber, Andrew D;
Poudel, Shyaron;
Wu, Jing;
Miller, Darcie J;
Lin, Wenwei;
Yang, Lei;
Bwayi, Monicah N;
Rimmer, Mary Ashley;
Gee, Rebecca R Florke;
Seetharaman, Jayaraman;
Chai, Sergio C;
Chen, Taosheng

Publication type:

Article

Lysine acetylation regulates the AT-rich DNA possession ability of H-NS.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1645, doi. 10.1093/nar/gkad1172

By:

Liu, Yabo;
Zhou, Mengqing;
Bu, Yifan;
Qin, Liang;
Zhang, Yuanxing;
Shao, Shuai;
Wang, Qiyao

Publication type:

Article

Nuclear localization of Argonaute 2 is affected by cell density and may relieve repression by microRNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1930, doi. 10.1093/nar/gkad1155

By:

Johnson, Krystal C;
Kilikevicius, Audrius;
Hofman, Cristina;
Hu, Jiaxin;
Liu, Yang;
Aguilar, Selina;
Graswich, Jon;
Han, Yi;
Wang, Tao;
Westcott, Jill M;
Brekken, Rolf A;
Peng, Lan;
Karagkounis, Georgios;
Corey, David R

Publication type:

Article

The miRNA–target interactions: An underestimated intricacy.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 4, p. 1544, doi. 10.1093/nar/gkad1142

By:

Diener, Caroline;
Keller, Andreas;
Meese, Eckart

Publication type:

Article