Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 21

Results: 48

A genomic database furnishes minimal functional glycyl-tRNA synthetases homologous to other, designed class II urzymes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13305, doi. 10.1093/nar/gkae992

By:

Patra, Sourav Kumar;
Douglas, Jordan;
Wills, Peter R;
Betts, Laurie;
Qing, Tang Guo;
Carter, Charles W

Publication type:

Article

NusG-dependent RNA polymerase pausing is a common feature of riboswitch regulatory mechanisms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12945, doi. 10.1093/nar/gkae981

By:

Jayasinghe, Oshadhi T;
Ritchey, Laura E;
Breil, Thomas;
Newman, Paxton;
Yakhnin, Helen;
Babitzke, Paul

Publication type:

Article

Synthetic translational coupling element for multiplexed signal processing and cellular control.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13469, doi. 10.1093/nar/gkae980

By:

Goh, Hyunseop;
Choi, Seungdo;
Kim, Jongmin

Publication type:

Article

Deep learning revealed the distribution and evolution patterns for invertible promoters across bacterial lineages.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12817, doi. 10.1093/nar/gkae966

By:

Wen, Jiejie;
Zhang, Haobo;
Chu, Dongliang;
Chen, Xiaoke;
Feng, Jingru;
Wang, Yucen;
Liu, Guanxi;
Zhang, Yuhao;
Li, Yuxue;
Ning, Kang

Publication type:

Article

Differential redox sensitivity of tRNA dihydrouridylation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12784, doi. 10.1093/nar/gkae964

By:

Kilz, Lea-Marie;
Zimmermann, Simone;
Marchand, Virginie;
Bourguignon, Valérie;
Sudol, Claudia;
Brégeon, Damien;
Hamdane, Djemel;
Motorin, Yuri;
Helm, Mark

Publication type:

Article

Uncoupling FRUITFULL's functions through modification of a protein motif identified by co-ortholog analysis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13290, doi. 10.1093/nar/gkae963

By:

Thoris, Kai;
Correa Marrero, Miguel;
Fiers, Martijn;
Lai, Xuelei;
Zahn, Iris E;
Jiang, Xiaobing;
Mekken, Mark;
Busscher, Stefan;
Jansma, Stuart;
Nanao, Max;
de Ridder, Dick;
van Dijk, Aalt D J;
Angenent, Gerco C;
Immink, Richard G H;
Zubieta, Chloe;
Bemer, Marian

Publication type:

Article

Spatial pattern and differential expression analysis with spatial transcriptomic data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. e101, doi. 10.1093/nar/gkae962

By:

Qin, Fei;
Luo, Xizhi;
Lu, Qing;
Cai, Bo;
Xiao, Feifei;
Cai, Guoshuai

Publication type:

Article

A bacterial transcription activator dedicated to the expression of the enzyme catalyzing the first committed step in fatty acid biosynthesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12930, doi. 10.1093/nar/gkae960

By:

Xu, Yuanyou;
Lin, Zihan;
Hou, Jiyuan;
Ye, Kai;
Han, Sirui;
Liang, Yuxuan;
Liang, Huihui;
Wu, Shihua;
Tao, Yizhi J;
Gao, Haichun

Publication type:

Article

PWOs repress gene transcription by regulating chromatin structures in Arabidopsis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12918, doi. 10.1093/nar/gkae958

By:

Yang, Tingting;
Wang, Dingyue;
Luo, Lingxiao;
Yin, Xiaochang;
Song, Zhihan;
Yang, Minqi;
Zhou, Yue

Publication type:

Article

Recruitment of homodimeric proneural factors by conserved CAT–CAT E-boxes drives major epigenetic reconfiguration in cortical neurogenesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12895, doi. 10.1093/nar/gkae950

By:

de Martin, Xabier;
Oliva, Baldomero;
Santpere, Gabriel

Publication type:

Article

YY1 is a transcriptional activator of the mouse LINE-1 Tf subfamily.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12878, doi. 10.1093/nar/gkae949

By:

Saha, Karabi;
Nielsen, Grace I;
Nandani, Raj;
Zhang, Yizi;
Kong, Lingqi;
Ye, Ping;
An, Wenfeng

Publication type:

Article

Insertion sequence elements and unique symmetrical genomic regions mediate chromosomal inversions in Streptococcus pyogenes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13128, doi. 10.1093/nar/gkae948

By:

Jespersen, Magnus G;
Hayes, Andrew J;
Tong, Steven Y C;
Davies, Mark R

Publication type:

Article

ALS-associated FUS mutation reshapes the RNA and protein composition of stress granules.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13269, doi. 10.1093/nar/gkae942

By:

Mariani, Davide;
Setti, Adriano;
Castagnetti, Francesco;
Vitiello, Erika;
Stufera Mecarelli, Lorenzo;
Di Timoteo, Gaia;
Giuliani, Andrea;
D'Angelo, Angelo;
Santini, Tiziana;
Perego, Eleonora;
Zappone, Sabrina;
Liessi, Nara;
Armirotti, Andrea;
Vicidomini, Giuseppe;
Bozzoni, Irene

Publication type:

Article

The first chicken oocyte nucleus whole transcriptomic profile defines the spectrum of maternal mRNA and non-coding RNA genes transcribed by the lampbrush chromosomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12850, doi. 10.1093/nar/gkae941

By:

Krasikova, Alla;
Kulikova, Tatiana;
Schelkunov, Mikhail;
Makarova, Nadezhda;
Fedotova, Anna;
Plotnikov, Vladimir;
Berngardt, Valeria;
Maslova, Antonina;
Fedorov, Anton

Publication type:

Article

Alternative substrate kinetics of SARS-CoV-2 Nsp15 endonuclease reveals a specificity landscape dominated by RNA structure.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13419, doi. 10.1093/nar/gkae939

By:

Kalia, Nidhi;
Snell, Kimberly C;
Harris, Michael E

Publication type:

Article

EGFR-mediated HSP70 phosphorylation facilitates PCNA association with chromatin and DNA replication.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13057, doi. 10.1093/nar/gkae938

By:

Wang, Yingying;
Fernandez, Anthony;
Pei, Xinyu;
Liu, Bing;
Shen, Lei;
Yan, Yao;
Solanki, Hitendra S;
Yang, Lin;
Zhou, Mian;
Guo, Yuming;
Wu, Jun;
Reckamp, Karen L;
Zheng, Li;
Shen, Binghui

Publication type:

Article

Tetrameric INTS6-SOSS1 complex facilitates DNA:RNA hybrid autoregulation at double-strand breaks.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13036, doi. 10.1093/nar/gkae937

By:

Long, Qilin;
Ajit, Kamal;
Sedova, Katerina;
Haluza, Vojtech;
Stefl, Richard;
Dokaneheifard, Sadat;
Beckedorff, Felipe;
Valencia, Monica G;
Sebesta, Marek;
Shiekhattar, Ramin;
Gullerova, Monika

Publication type:

Article

RNA G-quadruplex formation in biologically important transcribed regions: can two-tetrad intramolecular RNA quadruplexes be formed?

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13224, doi. 10.1093/nar/gkae927

By:

Basu, Pritha;
Kejnovská, Iva;
Gajarský, Martin;
Šubert, Denis;
Mikešová, Tereza;
Renčiuk, Daniel;
Trantírek, Lukáš;
Mergny, Jean-Louis;
Vorlíčková, Michaela

Publication type:

Article

Stacking correlation length in single-stranded DNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13243, doi. 10.1093/nar/gkae934

By:

Viader-Godoy, Xavier;
Manosas, Maria;
Ritort, Felix

Publication type:

Article

Global coupling of R-loop dynamics with RNA polymerase II modulates gene expression and early development of Drosophila.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13110, doi. 10.1093/nar/gkae933

By:

Zhang, Xianhong;
Liang, Shao-Bo;
Yi, Zhuoyun;
Qiao, Zhaohui;
Xu, Bo;
Geng, Huichao;
Wang, Honghong;
Yin, Xinhua;
Tang, Mingliang;
Ge, Wanzhong;
Xu, Yong-Zhen;
Liang, Kaiwei;
Fan, Yu-Jie;
Chen, Liang

Publication type:

Article

Systematic analysis of the target recognition and repression by the Pumilio proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13402, doi. 10.1093/nar/gkae929

By:

Farberov, Svetlana;
Ulitsky, Igor

Publication type:

Article

DNA supercoiling enhances DNA condensation by ParB proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13255, doi. 10.1093/nar/gkae936

By:

Martin-Gonzalez, Alejandro;
Tišma, Miloš;
Analikwu, Brian T;
Barth, Anders;
Janissen, Richard;
Antar, Hammam;
Kemps, Gianluca;
Gruber, Stephan;
Dekker, Cees

Publication type:

Article

ZNF512B binds RBBP4 via a variant NuRD interaction motif and aggregates chromatin in a NuRD complex-independent manner.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12831, doi. 10.1093/nar/gkae926

By:

Wunderlich, Tim Marius;
Deshpande, Chandrika;
Paasche, Lena W;
Friedrich, Tobias;
Diegmüller, Felix;
Haddad, Elias;
Kreienbaum, Carlotta;
Naseer, Haniya;
Stebel, Sophie E;
Daus, Nadine;
Leers, Jörg;
Lan, Jie;
Trinh, Van Tuan;
Vázquez, Olalla;
Butter, Falk;
Bartkuhn, Marek;
Mackay, Joel P;
Hake, Sandra B

Publication type:

Article

GTSF1 is required for transposon silencing in the unicellular eukaryote Paramecium tetraurelia.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13206, doi. 10.1093/nar/gkae925

By:

Wang, Chundi;
Lyv, Liping;
Solberg, Therese;
Zhang, Haoyue;
Wen, Zhiwei;
Gao, Feng

Publication type:

Article

Structural basis of transcriptional regulation by UrtR in response to uric acid.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13192, doi. 10.1093/nar/gkae922

By:

Song, Wan Seok;
Ki, Dong Uk;
Cho, Hye Yeon;
Kwon, Oh Hyun;
Cho, Hongbaek;
Yoon, Sung-il

Publication type:

Article

Coronavirus S protein alters dsRNA accumulation and stress granule formation through regulation of ADAR1-p150 expression.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13174, doi. 10.1093/nar/gkae921

By:

Fan, Baochao;
Li, Yupeng;
Wang, Yi;
Yang, Shanshan;
Peng, Qi;
Qian, Jiali;
Wang, Chuanhong;
Zhang, Xue;
Xu, Hong;
Liu, Shiyu;
He, Wenlong;
Zhang, Gege;
Zhu, Xuejiao;
Li, Yunchuan;
Zhao, Yongxiang;
Hu, Mi;
Wang, Wei;
Zhou, Jinzhu;
Guo, Rongli;
He, Kongwang

Publication type:

Article

Aptamer-based assay for high-throughput substrate profiling of RNA decapping enzymes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. e100, doi. 10.1093/nar/gkae919

By:

Grab, Katarzyna;
Fido, Mateusz;
Spiewla, Tomasz;
Warminski, Marcin;
Jemielity, Jacek;
Kowalska, Joanna

Publication type:

Article

PCNA-binding activity separates RNF168 functions in DNA replication and DNA double-stranded break signaling.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13019, doi. 10.1093/nar/gkae918

By:

Yang, Yang;
Jayaprakash, Deepika;
Jhujh, Satpal S;
Reynolds, John J;
Chen, Steve;
Gao, Yanzhe;
Anand, Jay Ramanlal;
Mutter-Rottmayer, Elizabeth;
Ariel, Pablo;
An, Jing;
Cheng, Xing;
Pearce, Kenneth H;
Blanchet, Sophie-Anne;
Nandakumar, Nandana;
Zhou, Pei;
Fradet-Turcotte, Amélie;
Stewart, Grant S;
Vaziri, Cyrus

Publication type:

Article

OmicsFootPrint: a framework to integrate and interpret multi-omics data using circular images and deep neural networks.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. e99, doi. 10.1093/nar/gkae915

By:

Tang, Xiaojia;
Prodduturi, Naresh;
Thompson, Kevin J;
Weinshilboum, Richard;
O'Sullivan, Ciara C;
Boughey, Judy C;
Tizhoosh, Hamid R;
Klee, Eric W;
Wang, Liewei;
Goetz, Matthew P;
Suman, Vera;
Kalari, Krishna R

Publication type:

Article

Towards the genomic sequence code of DNA fragility for machine learning.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12798, doi. 10.1093/nar/gkae914

By:

Pflughaupt, Patrick;
Abdullah, Adib A;
Masuda, Kairi;
Sahakyan, Aleksandr B

Publication type:

Article

A novel interpretable deep learning-based computational framework designed synthetic enhancers with broad cross-species activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13447, doi. 10.1093/nar/gkae912

By:

Li, Zhaohong;
Zhang, Yuanyuan;
Peng, Bo;
Qin, Shenghua;
Zhang, Qian;
Chen, Yun;
Chen, Choulin;
Bao, Yongzhou;
Zhu, Yuqi;
Hong, Yi;
Liu, Binghua;
Liu, Qian;
Xu, Lingna;
Chen, Xi;
Ma, Xinhao;
Wang, Hongyan;
Xie, Long;
Yao, Yilong;
Deng, Biao;
Li, Jiaying

Publication type:

Article

RNase W, a conserved ribonuclease family with a novel active site.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13386, doi. 10.1093/nar/gkae907

By:

Vayssières, Marlène;
Jüttner, Michael;
Haas, Karina;
Ancelin, Aurélie;
Marchfelder, Anita;
Leulliot, Nicolas;
Ferreira-Cerca, Sébastien;
Blaud, Magali

Publication type:

Article

Unveiling host–parasite relationships through conserved MITEs in prokaryote and viral genomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13094, doi. 10.1093/nar/gkae906

By:

Nadal-Molero, Francisco;
Rosselli, Riccardo;
Garcia-Juan, Silvia;
Campos-Lopez, Alicia;
Martin-Cuadrado, Ana-Belen

Publication type:

Article

SNF2L suppresses nascent DNA gap formation to promote DNA synthesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13003, doi. 10.1093/nar/gkae903

By:

Nelligan, Anthony;
Dungrawala, Huzefa

Publication type:

Article

Pathogen-encoded Rum DNA polymerase drives rapid bacterial drug resistance.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12987, doi. 10.1093/nar/gkae899

By:

Jaszczur, Malgorzata M;
Pham, Phuong;
Ojha, Debika;
Pham, Cecilia Q;
McDonald, John P;
Woodgate, Roger;
Goodman, Myron F

Publication type:

Article

Various plasmid strategies limit the effect of bacterial restriction–modification systems against conjugation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12976, doi. 10.1093/nar/gkae896

By:

Dimitriu, Tatiana;
Szczelkun, Mark D;
Westra, Edze R

Publication type:

Article

Two riboswitch classes that share a common ligand-binding fold show major differences in the ability to accommodate mutations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13152, doi. 10.1093/nar/gkae886

By:

Srivastava, Yoshita;
Akinyemi, Olayinka;
Rohe, Tiana C;
Pritchett, Elizabeth M;
Baker, Cameron D;
Sharma, Akshara;
Jenkins, Jermaine L;
Mathews, David H;
Wedekind, Joseph E

Publication type:

Article

MethyLasso: a segmentation approach to analyze DNA methylation patterns and identify differentially methylated regions from whole-genome datasets.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. e98, doi. 10.1093/nar/gkae880

By:

Balaramane, Delphine;
Spill, Yannick G;
Weber, Michaël;
Bardet, Anaïs Flore

Publication type:

Article

Human selenocysteine synthase, SEPSECS, has evolved to optimize binding of a tRNA-based substrate.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13368, doi. 10.1093/nar/gkae875

By:

Puppala, Anupama K;
Sosa, Dylan;
Castillo Suchkou, Jennifer;
French, Rachel L;
Dobosz-Bartoszek, Malgorzata;
Kiernan, Kaitlyn A;
Simonović, Miljan

Publication type:

Article

A compact stem-loop DNA aptamer targets a uracil-binding pocket in the SARS-CoV-2 nucleocapsid RNA-binding domain.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13138, doi. 10.1093/nar/gkae874

By:

Esler, Morgan A;
Belica, Christopher A;
Rollie, Joseph A;
Brown, William L;
Moghadasi, Seyed Arad;
Shi, Ke;
Harki, Daniel A;
Harris, Reuben S;
Aihara, Hideki

Publication type:

Article

Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13073, doi. 10.1093/nar/gkae871

By:

Pyöriä, Lari;
Pratas, Diogo;
Toppinen, Mari;
Simmonds, Peter;
Hedman, Klaus;
Sajantila, Antti;
Perdomo, Maria F

Publication type:

Article

Taurine hypomodification underlies mitochondrial tRNA<sup>Trp</sup>-related genetic diseases.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13351, doi. 10.1093/nar/gkae854

By:

Lu, Jia-Li;
Dai, Yichen;
Ji, Kunqian;
Peng, Gui-Xin;
Li, Hong;
Yan, Chuanzhu;
Shen, Bin;
Zhou, Xiao-Long

Publication type:

Article

RAD52-mediated repair of DNA double-stranded breaks at inactive centromeres leads to subsequent apoptotic cell death.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12961, doi. 10.1093/nar/gkae852

By:

Maruta, Gen;
Maeoka, Hisanori;
Tsunoda, Toshiyuki;
Akiyoshi, Kozaburo;
Takagi, Satoshi;
Shirasawa, Senji;
Ishikura, Shuhei

Publication type:

Article

Optimized periphery-core interface increases fitness of the Bacillus subtilis glmS ribozyme.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13340, doi. 10.1093/nar/gkae830

By:

Yu, Li-Eng D;
White, Elise N;
Woodson, Sarah A

Publication type:

Article

Modulation of UPF1 catalytic activity upon interaction of SARS-CoV-2 Nucleocapsid protein with factors involved in nonsense mediated-mRNA decay.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13325, doi. 10.1093/nar/gkae829

By:

Mallick, Megha;
Boehm, Volker;
Xue, Guangpu;
Blackstone, Mark;
Gehring, Niels H;
Chakrabarti, Sutapa

Publication type:

Article

STK19 is a transcription-coupled repair factor that participates in UVSSA ubiquitination and TFIIH loading.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12767, doi. 10.1093/nar/gkae787

By:

Tan, Yuanqing;
Gao, Meng;
Huang, Yanchao;
Zhan, Delin;
Wu, Sizhong;
An, Jiao;
Zhang, Xiping;
Hu, Jinchuan

Publication type:

Article

Structural insights into human ELAC2 as a tRNA 3′ processing enzyme.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13434, doi. 10.1093/nar/gkae1014

By:

Xue, Chenyang;
Tian, Junshan;
Chen, Yanhong;
Liu, Zhongmin

Publication type:

Article

Correction to 'Solution structures and effects of a platinum compound successively bound MYC G-quadruplex'.

Published in:: 2024
Publication type:: Correction Notice