Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 20

Results: 46

Structural and functional insights into the interaction between the bacteriophage T4 DNA processing proteins gp32 and Dda.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12748, doi. 10.1093/nar/gkae910

By:

He, Xiaoping;
Yun, Mi-Kyung;
Li, Zhenmei;
Waddell, M Brett;
Nourse, Amanda;
Churion, Kelly A;
Kreuzer, Kenneth N;
Byrd, Alicia K;
White, Stephen W

Publication type:

Article

What is the real value of omics data? Enhancing research outcomes and securing long-term data excellence.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12130, doi. 10.1093/nar/gkae901

By:

Price, Eva;
Feyertag, Felix;
Evans, Thomas;
Miskin, James;
Mitrophanous, Kyriacos;
Dikicioglu, Duygu

Publication type:

Article

Structure-based discovery of first inhibitors targeting the helicase activity of human PIF1.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12616, doi. 10.1093/nar/gkae897

By:

Wever, Mark J A;
Scommegna, Francesca R;
Egea-Rodriguez, Sara;
Dehghani-Tafti, Saba;
Brandao-Neto, Jose;
Poisson, Jean-François;
Helfrich, Iris;
Antson, Alfred A;
Rodeschini, Vincent;
Bax, Ben;
Roche, Didier;
Sanders, Cyril M

Publication type:

Article

Mycobacterium smegmatis NucS-promoted DNA mismatch repair involves limited resection by a 5′-3′ exonuclease and is independent of homologous recombination and NHEJ.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12308, doi. 10.1093/nar/gkae895

By:

Rivera-Flores, Iris V;
Wang, Emily X;
Murphy, Kenan C

Publication type:

Article

Pipolins are bimodular platforms that maintain a reservoir of defense systems exchangeable with various bacterial genetic mobile elements.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12498, doi. 10.1093/nar/gkae891

By:

Mateo-Cáceres, Víctor;
Redrejo-Rodríguez, Modesto

Publication type:

Article

Molecular basis for the transcriptional regulation of an epoxide-based virulence circuit in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12727, doi. 10.1093/nar/gkae889

By:

He, Susu;
Taher, Noor M;
Simard, Adam R;
Hvorecny, Kelli L;
Ragusa, Michael J;
Bahl, Christopher D;
Hickman, Alison B;
Dyda, Fred;
Madden, Dean R

Publication type:

Article

SUPREM: an engineered non-site-specific m6A RNA methyltransferase with highly improved efficiency.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12158, doi. 10.1093/nar/gkae887

By:

Ochiai, Yoshiki;
Clifton, Ben E;
Le Coz, Madeleine;
Terenzio, Marco;
Laurino, Paola

Publication type:

Article

Localization and discrimination of GG mismatch in duplex DNA by synthetic ligand-enhanced protein nanopore analysis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12191, doi. 10.1093/nar/gkae884

By:

Lyu, Wenping;
Zhu, Jianji;
Huang, XiaoQin;
Chinappi, Mauro;
Garoli, Denis;
Gui, Cenglin;
Yang, Tao;
Wang, Jiahai

Publication type:

Article

Visualization of Type IV-A1 CRISPR-mediated repression of gene expression and plasmid replication.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12592, doi. 10.1093/nar/gkae879

By:

Sanchez-Londono, Mariana;
Rust, Selina;
Hernández-Tamayo, Rogelio;
Gomes-Filho, José Vicente;
Thanbichler, Martin;
Randau, Lennart

Publication type:

Article

Dual decoding of cell types and gene expression in spatial transcriptomics with PANDA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12173, doi. 10.1093/nar/gkae876

By:

Wang, Meng-Guo;
Chen, Luonan;
Zhang, Xiao-Fei

Publication type:

Article

Self-assembly and condensation of intermolecular poly(UG) RNA quadruplexes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12582, doi. 10.1093/nar/gkae870

By:

Roschdi, Saeed;
Montemayor, Eric J;
Vivek, Rahul;
Bingman, Craig A;
Butcher, Samuel E

Publication type:

Article

Core enhancers of the 3′RR optimize IgH nuclear position and loop conformation for successful oriented class switch recombination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12281, doi. 10.1093/nar/gkae867

By:

Bruzeau, Charlotte;
Martin, Ophélie;
Pollet, Justine;
Thomas, Morgane;
Ba, Zhaoqing;
Roulois, David;
Pinaud, Eric;
Le Noir, Sandrine

Publication type:

Article

Chromosomal integrons are genetically and functionally isolated units of genomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12565, doi. 10.1093/nar/gkae866

By:

Blanco, Paula;
Trigo da Roza, Filipa;
Toribio-Celestino, Laura;
García-Pastor, Lucía;
Caselli, Niccolò;
Morón, Álvaro;
Ojeda, Francisco;
Darracq, Baptiste;
Vergara, Ester;
Amaro, Francisco;
San Millán, Álvaro;
Skovgaard, Ole;
Mazel, Didier;
Loot, Céline;
Escudero, José Antonio

Publication type:

Article

Probing the mechanism of nick searching by LIG1 at the single-molecule level.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12604, doi. 10.1093/nar/gkae865

By:

Chatterjee, Surajit;
Chaubet, Loïc;
van den Berg, Aafke;
Mukhortava, Ann;
Almohdar, Danah;
Ratcliffe, Jacob;
Gulkis, Mitchell;
Çağlayan, Melike

Publication type:

Article

Integrated multi-omics analysis of PBX1 in mouse adult neural stem- and progenitor cells identifies a transcriptional module that functionally links PBX1 to TCF3/4.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12262, doi. 10.1093/nar/gkae864

By:

Laub, Vera;
Nan, Elisabeth;
Elias, Lena;
Donaldson, Ian J;
Bentsen, Mette;
Rusling, Leona A;
Schupp, Jonathan;
Lun, Jennifer H;
Plate, Karl H;
Looso, Mario;
Langer, Julian D;
Günther, Stefan;
Bobola, Nicoletta;
Schulte, Dorothea

Publication type:

Article

PTBP1 mediates Sertoli cell actin cytoskeleton organization by regulating alternative splicing of actin regulators.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12244, doi. 10.1093/nar/gkae862

By:

Wang, Yuexi;
Chembazhi, Ullas Valiya;
Yee, Danielle;
Chen, Sijie;
Ji, Jie;
Wang, Yujie;
Nguyen, Ka Lam;
Lin, PoChing;
Ratti, Antonia;
Hess, Rex A;
Qiao, Huanyu;
Ko, CheMyong;
Yang, Jing;
Kalsotra, Auinash;
Mei, Wenyan

Publication type:

Article

Revisiting the y-ome of Escherichia coli.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12201, doi. 10.1093/nar/gkae857

By:

Moore, Lisa R;
Caspi, Ron;
Boyd, Dana;
Berkmen, Mehmet;
Mackie, Amanda;
Paley, Suzanne;
Karp, Peter D

Publication type:

Article

Selective degradation of phage RNAs by the Csm6 ribonuclease provides robust type III CRISPR immunity in Streptococcus thermophilus.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12549, doi. 10.1093/nar/gkae856

By:

Johnson, Katie A;
Garrett, Sandra C;
Noble-Molnar, Christopher;
Elgarhi, Hanna A;
Woodside, Walter T;
Cooper, Clare;
Zhang, Xinfu;
Olson, Sara;
Catchpole, Ryan J;
Graveley, Brenton R;
Terns, Michael P

Publication type:

Article

Re-appraising the evidence for the source, regulation and function of p53-family isoforms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12112, doi. 10.1093/nar/gkae855

By:

López, Ignacio;
Valdivia, Irene Larghero;
Vojtesek, Borivoj;
Fåhraeus, Robin;
Coates, Philip J

Publication type:

Article

Ribosome Quality Control mitigates the cytotoxicity of ribosome collisions induced by 5-Fluorouracil.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12534, doi. 10.1093/nar/gkae849

By:

Chatterjee, Susanta;
Naeli, Parisa;
Onar, Okan;
Simms, Nicole;
Garzia, Aitor;
Hackett, Angela;
Coyle, Kelsey;
Harris Snell, Patric;
McGirr, Tom;
Sawant, Tanvi Nitin;
Dang, Kexin;
Stoichkova, Zornitsa Vasileva;
Azam, Yumna;
Saunders, Mark P;
Braun, Michael;
Alain, Tommy;
Tuschl, Thomas;
McDade, Simon S;
Longley, Daniel B;
Gkogkas, Christos G

Publication type:

Article

Development of hydrophobic tag purifying monophosphorylated RNA for chemical synthesis of capped mRNA and enzymatic synthesis of circular mRNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12141, doi. 10.1093/nar/gkae847

By:

Ototake, Mami;
Inagaki, Masahito;
Kimura, Seigo;
Onda, Kaoru;
Tada, Mizuki;
Kawaguchi, Daisuke;
Murase, Hirotaka;
Fukuchi, Kosuke;
Gao, Yinuo;
Kokubo, Kengo;
Acharyya, Susit;
Meng, Zheyu;
Ishida, Tatsuma;
Kawasaki, Tairin;
Abe, Naoko;
Hashiya, Fumitaka;
Kimura, Yasuaki;
Abe, Hiroshi

Publication type:

Article

Massively parallel binding assay (MPBA) reveals limited transcription factor binding cooperativity, challenging models of specificity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12227, doi. 10.1093/nar/gkae846

By:

Jana Lang, Tamar;
Brodsky, Sagie;
Manadre, Wajd;
Vidavski, Matan;
Valinsky, Gili;
Mindel, Vladimir;
Ilan, Guy;
Carmi, Miri;
Jonas, Felix;
Barkai, Naama

Publication type:

Article

N2-Alkyl-dG lesions elicit R-loop accumulation in the genome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12487, doi. 10.1093/nar/gkae845

By:

Wang, Yinan;
Tang, Feng;
Zhao, Ting;
Yuan, Jun;
Kellum, Andrew H;
Wang, Yinsheng

Publication type:

Article

Altered dNTP pools accelerate tumor formation in mice.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12475, doi. 10.1093/nar/gkae843

By:

Tran, Phong;
Mishra, Pradeep;
Williams, Leonard G;
Moskalenko, Roman;
Sharma, Sushma;
Nilsson, Anna Karin;
Watt, Danielle L;
Andersson, Pernilla;
Bergh, Anders;
Pursell, Zachary F;
Chabes, Andrei

Publication type:

Article

Haplotype-resolved de novo assembly revealed unique characteristics of alternative lengthening of telomeres in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12456, doi. 10.1093/nar/gkae842

By:

Lee, Hyunji;
Niida, Hiroyuki;
Sung, Sanghyun;
Lee, Junho

Publication type:

Article

The Swi5–Sfr1 complex regulates Dmc1- and Rad51-driven DNA strand exchange proceeding through two distinct three-stranded intermediates by different mechanisms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12517, doi. 10.1093/nar/gkae841

By:

Ito, Kentaro;
Maki, Takahisa;
Kanamaru, Shuji;
Takahashi, Masayuki;
Iwasaki, Hiroshi

Publication type:

Article

Pathological R-loops in bacteria from engineered expression of endogenous antisense RNAs whose synthesis is ordinarily terminated by Rho.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12438, doi. 10.1093/nar/gkae839

By:

Pandiyan, Apuratha;
Mallikarjun, Jillella;
Maheshwari, Himanshi;
Gowrishankar, Jayaraman

Publication type:

Article

Establishment of closed 35S ribosomal RNA gene chromatin in stationary Saccharomyces cerevisiae cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12208, doi. 10.1093/nar/gkae838

By:

Babl, Virginia;
Girke, Philipp;
Kruse, Sebastian;
Pinz, Sophia;
Hannig, Katharina;
Schächner, Christopher;
Hergert, Kristin;
Wittner, Manuel;
Seufert, Wolfgang;
Milkereit, Philipp;
Tschochner, Herbert;
Griesenbeck, Joachim

Publication type:

Article

Human hnRNPA1 reorganizes telomere-bound replication protein A.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12422, doi. 10.1093/nar/gkae834

By:

Granger, Sophie L;
Sharma, Richa;
Kaushik, Vikas;
Razzaghi, Mortezaali;
Honda, Masayoshi;
Gaur, Paras;
Bhat, Divya S;
Labenz, Sabryn M;
Heinen, Jenna E;
Williams, Blaine A;
Tabei, S M Ali;
Wlodarski, Marcin W;
Antony, Edwin;
Spies, Maria

Publication type:

Article

Disparate requirements for RAD54L in replication fork reversal.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12390, doi. 10.1093/nar/gkae828

By:

Uhrig, Mollie E;
Sharma, Neelam;
Maxwell, Petey;
Gomez, Jordi;
Selemenakis, Platon;
Mazin, Alexander V;
Wiese, Claudia

Publication type:

Article

Phylogenomic instructed target analysis reveals ELAV complex binding to multiple optimally spaced U-rich motifs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12712, doi. 10.1093/nar/gkae826

By:

McQuarrie, David W J;
Soller, Matthias

Publication type:

Article

Protein–RNA interactions mediated by silvestrol—insight into a unique molecular clamp.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12701, doi. 10.1093/nar/gkae824

By:

Naineni, Sai Kiran;
Bhatt, Garvit;
Jiramongkolsiri, Ekkanat;
Robert, Francis;
Cencic, Regina;
Huang, Sidong;
Nagar, Bhushan;
Pelletier, Jerry

Publication type:

Article

The interplay between peptides and RNA is critical for protoribosome compartmentalization and stability.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12689, doi. 10.1093/nar/gkae823

By:

Codispoti, Simone;
Yamaguchi, Tomoko;
Makarov, Mikhail;
Giacobelli, Valerio G;
Mašek, Martin;
Kolář, Michal H;
Sanchez Rocha, Alma Carolina;
Fujishima, Kosuke;
Zanchetta, Giuliano;
Hlouchová, Klára

Publication type:

Article

Nuclease-induced stepwise photodropping (NISP) to precisely investigate single-stranded DNA degradation behaviors of exonucleases and endonucleases.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. e97, doi. 10.1093/nar/gkae822

By:

Chiu, Hui-Pin;
Shen, Chung-Han;
Wu, Jan-Kai;
Mao, Eric Y C;
Yen, Han-Yi;
Chang, Yuan-Pin;
Wu, Chyuan-Chuan;
Fan, Hsiu-Fang

Publication type:

Article

3,N4-Etheno-5-methylcytosine blocks TET1-3 oxidation but is repaired by ALKBH2, 3 and FTO.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12378, doi. 10.1093/nar/gkae818

By:

Ma, Jian;
Qi, Rui;
Harcourt, Emily M;
Chen, Yi-Tzai;
Barbosa, Giovannia M;
Peng, Zhiyuan;
Howarth, Samuel;
Delaney, Sarah;
Li, Deyu

Publication type:

Article

p53-dependent crosstalk between DNA replication integrity and redox metabolism mediated through a NRF2-PARP1 axis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12351, doi. 10.1093/nar/gkae811

By:

Elfar, Gamal Ahmed;
Aning, Obed;
Ngai, Tsz Wai;
Yeo, Pearlyn;
Chan, Joel Wai Kit;
Sim, Shang Hong;
Goh, Leonard;
Yuan, Ju;
Phua, Cheryl Zi Jin;
Yeo, Joanna Zhen Zhen;
Mak, Shi Ya;
Goh, Brian Kim Poh;
Chow, Pierce Kah-Hoe;
Tam, Wai Leong;
Ho, Ying Swan;
Cheok, Chit Fang

Publication type:

Article

The TRIM-NHL RNA-binding protein Brain Tumor coordinately regulates expression of the glycolytic pathway and vacuolar ATPase complex.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12669, doi. 10.1093/nar/gkae810

By:

Connacher, Robert P;
Roden, Richard T;
Huang, Kai-Lieh;
Korte, Amanda J;
Yeruva, Saathvika;
Dittbenner, Noel;
DesMarais, Anna J;
Weidmann, Chase A;
Randall, Thomas A;
Williams, Jason;
Hall, Traci M Tanaka;
Wagner, Eric J;
Goldstrohm, Aaron C

Publication type:

Article

Switch-like phosphorylation of WRN integrates end-resection with RAD51 metabolism at collapsed replication forks.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12334, doi. 10.1093/nar/gkae807

By:

Palermo, Valentina;
Malacaria, Eva;
Semproni, Maurizio;
Camerini, Serena;
Casella, Marialuisa;
Perdichizzi, Benedetta;
Valenzisi, Pasquale;
Sanchez, Massimo;
Marini, Federica;
Pellicioli, Achille;
Franchitto, Annapaola;
Pichierri, Pietro

Publication type:

Article

Evolving Escherichia coli to use a tRNA with a non-canonical fold as an adaptor of the genetic code.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12650, doi. 10.1093/nar/gkae806

By:

Edelmann, Martin P;
Couperus, Sietse;
Rodríguez-Robles, Emilio;
Rivollier, Julie;
Roberts, Tania M;
Panke, Sven;
Marlière, Philippe

Publication type:

Article

Correction to 'Accelerated discovery and miniaturization of novel single-stranded cytidine deaminases'.

Published in:: 2024
Publication type:: Correction Notice

DciA secures bidirectional replication initiation in Vibrio cholerae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12324, doi. 10.1093/nar/gkae795

By:

Besombes, Amelie;
Adam, Yazid;
Possoz, Christophe;
Junier, Ivan;
Barre, Francois-Xavier;
Ferat, Jean-Luc

Publication type:

Article

Correction to 'DORQ-seq: high-throughput quantification of femtomol tRNA pools by combination of cDNA hybridization and Deep sequencing'.

Published in:: 2024
Publication type:: Correction Notice

Revisiting the model for coactivator recruitment: Med15 can select its target sites independent of promoter-bound transcription factors.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12093, doi. 10.1093/nar/gkae718

By:

Mindel, Vladimir;
Brodsky, Sagie;
Yung, Hadas;
Manadre, Wajd;
Barkai, Naama

Publication type:

Article

TIRR regulates mRNA export and association with P-bodies in response to DNA damage.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12633, doi. 10.1093/nar/gkae688

By:

Glossop, Michelle S;
Chelysheva, Irina;
Ketley, Ruth F;
Alagia, Adele;
Gullerova, Monika

Publication type:

Article

Correction to 'CRISPR perfect adaptation for robust control of cellular immune and apoptotic responses'.

Published in:: 2024
Publication type:: Correction Notice

Genome editing outcomes reveal mycobacterial NucS participates in a short-patch repair of DNA mismatches.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12295, doi. 10.1093/nar/gkae402

By:

Islam, Tanjina;
Josephs, Eric A

Publication type:

Article