Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 18

Results: 55

Correction to 'Expanded MutaT7 toolkit efficiently and simultaneously accesses all possible transition mutations in bacteria'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Advancing quantitative PCR with color cycle multiplex amplification'.

Published in:: 2024
Publication type:: Correction Notice

Crystal structure and nucleic acid binding mode of CPV NSP9: implications for viroplasm in Reovirales.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11115, doi. 10.1093/nar/gkae803

By:

Wang, Yeda;
Guo, Hangtian;
Lu, Yuhao;
Yang, Wanbin;
Li, Tinghan;
Ji, Xiaoyun

Publication type:

Article

Correction to 'MRE11 UFMylation promotes ATM activation'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Efficient circularization of protein-encoding RNAs via a novel cis-splicing system'.

Published in:: 2024
Publication type:: Correction Notice

Accelerated discovery and miniaturization of novel single-stranded cytidine deaminases.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11188, doi. 10.1093/nar/gkae800

By:

Deng, Jiacheng;
Li, Xueyuan;
Yu, Hao;
Yang, Lin;
Wang, Ziru;
Yi, Wenfeng;
Liu, Ying;
Xiao, Wenyu;
Xiang, Hongyong;
Xie, Zicong;
Lv, Dongmei;
Ouyang, Hongsheng;
Pang, Daxin;
Yuan, Hongming

Publication type:

Article

How to scan naked DNA using promiscuous recognition and no clamping: a model for pioneer transcription factors.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11098, doi. 10.1093/nar/gkae790

By:

Goluguri, Rama Reddy;
Ghosh, Catherine;
Quintong, Joshua;
Sadqi, Mourad;
Muñoz, Victor

Publication type:

Article

Identification of an RNA-binding perturbing characteristic for thiopurine drugs and their derivatives to disrupt CELF1–RNA interaction.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10810, doi. 10.1093/nar/gkae788

By:

Tan, Yang;
Zhao, Zhibo;
Han, Qingfang;
Xu, Peipei;
Shen, Xiaopeng;
Jiang, Yajun;
Xu, Qiang;
Wu, Xingxin

Publication type:

Article

Reconstruction of a robust bacterial replication module.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11394, doi. 10.1093/nar/gkae786

By:

Wang, Tao;
He, Fan;
He, Ting;
Lin, Chen;
Guan, Xin;
Qin, Zhongjun;
Xue, Xiaoli

Publication type:

Article

Structural insights into the biosynthetic mechanism of N<sup>α</sup>-GlyT and 5-NmdU hypermodifications of DNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11083, doi. 10.1093/nar/gkae784

By:

Wen, Yan;
Guo, Wenting;
Meng, Chunyan;
Yang, Jie;
Xu, Sha;
Chen, Haitao;
Gan, Jianhua;
Wu, Baixing

Publication type:

Article

CRISETR: an efficient technology for multiplexed refactoring of biosynthetic gene clusters.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11378, doi. 10.1093/nar/gkae781

By:

He, Fuqiang;
Liu, Xinpeng;
Tang, Min;
Wang, Haiyi;
Wu, Yun;
Liang, Shufang

Publication type:

Article

Using nucleolytic toxins as restriction enzymes enables new RNA applications.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. e90, doi. 10.1093/nar/gkae779

By:

Rothweiler, Ulli;
Gundesø, Sigurd Eidem;
Mikalsen, Emma Wu;
Svenning, Steingrim;
Singh, Mahavir;
Combes, Francis;
Pettersson, Frida J;
Mangold, Antonia;
Piotrowski, Yvonne;
Schwab, Felix;
Lanes, Olav;
Striberny, Bernd Ketelsen

Publication type:

Article

Making target sites in large structured RNAs accessible to RNA-cleaving DNAzymes through hybridization with synthetic DNA oligonucleotides.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11177, doi. 10.1093/nar/gkae778

By:

Nurmi, Connor;
Gu, Jimmy;
Mathai, Amal;
Brennan, John D;
Li, Yingfu

Publication type:

Article

RTP801 interacts with the tRNA ligase complex and dysregulates its RNA ligase activity in Alzheimer's disease.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11158, doi. 10.1093/nar/gkae776

By:

Campoy-Campos, Genís;
Solana-Balaguer, Julia;
Guisado-Corcoll, Anna;
Chicote-González, Almudena;
Garcia-Segura, Pol;
Pérez-Sisqués, Leticia;
Torres, Adrian Gabriel;
Canal, Mercè;
Molina-Porcel, Laura;
Fernández-Irigoyen, Joaquín;
Santamaria, Enrique;
de Pouplana, Lluís Ribas;
Alberch, Jordi;
Martí, Eulàlia;
Giralt, Albert;
Pérez-Navarro, Esther;
Malagelada, Cristina

Publication type:

Article

SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10862, doi. 10.1093/nar/gkae772

By:

Fehrenbach, Axel;
Mitrofanov, Alexander;
Alkhnbashi, Omer S;
Backofen, Rolf;
Baumdicker, Franz

Publication type:

Article

HIV-1 usurps mixed-charge domain-dependent CPSF6 phase separation for higher-order capsid binding, nuclear entry and viral DNA integration.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11060, doi. 10.1093/nar/gkae769

By:

Jang, Sooin;
Bedwell, Gregory J;
Singh, Satya P;
Yu, Hyun Jae;
Arnarson, Bjarki;
Singh, Parmit K;
Radhakrishnan, Rajalingam;
Douglas, AidanDarian W;
Ingram, Zachary M;
Freniere, Christian;
Akkermans, Onno;
Sarafianos, Stefan G;
Ambrose, Zandrea;
Xiong, Yong;
Anekal, Praju V;
Montero Llopis, Paula;
KewalRamani, Vineet N;
Francis, Ashwanth C;
Engelman, Alan N

Publication type:

Article

Correction to 'Structural basis for difunctional mechanism of m-AMSA against African swine fever virus pP1192R'.

Published in:: 2024
Publication type:: Correction Notice

Synergistic effect of split DNA activators of Cas12a with exon-unwinding and induced targeting effect.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11148, doi. 10.1093/nar/gkae766

By:

Huang, Shen;
Lou, Yongliang;
Zheng, Laibao

Publication type:

Article

DORQ-seq: high-throughput quantification of femtomol tRNA pools by combination of cDNA hybridization and Deep sequencing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. e89, doi. 10.1093/nar/gkae765

By:

Marco, Kristen;
Marc, Lander;
Lea-Marie, Kilz;
Lukas, Gleue;
Marko, Jörg;
Damien, Bregeon;
Djemel, Hamdane;
Virginie, Marchand;
Yuri, Motorin;
Kristina, Friedland;
Mark, Helm

Publication type:

Article

Striving for clarity in language about gene expression.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10747, doi. 10.1093/nar/gkae764

By:

Cunningham, Ana S G;
Gorospe, Myriam

Publication type:

Article

Correction to 'Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch'.

Published in:: 2024
Publication type:: Correction Notice

Trinucleotide cap analogs with triphosphate chain modifications: synthesis, properties, and evaluation as mRNA capping reagents.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10788, doi. 10.1093/nar/gkae763

By:

Warminski, Marcin;
Depaix, Anais;
Ziemkiewicz, Kamil;
Spiewla, Tomasz;
Zuberek, Joanna;
Drazkowska, Karolina;
Kedzierska, Hanna;
Popielec, Agnieszka;
Baranowski, Marek R;
Sklucka, Marta;
Bednarczyk, Marcelina;
Smietanski, Miroslaw;
Wolosewicz, Karol;
Majewski, Bartosz;
Serwa, Remigiusz A;
Nowis, Dominika;
Golab, Jakub;
Kowalska, Joanna;
Jemielity, Jacek

Publication type:

Article

DFF-ChIP: a method to detect and quantify complex interactions between RNA polymerase II, transcription factors, and chromatin.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. e88, doi. 10.1093/nar/gkae760

By:

Spector, Benjamin M;
Santana, Juan F;
Pufall, Miles A;
Price, David H

Publication type:

Article

Learning to quantify uncertainty in off-target activity for CRISPR guide RNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. e87, doi. 10.1093/nar/gkae759

By:

Özden, Furkan;
Minary, Peter

Publication type:

Article

ARTEMIS: a method for topology-independent superposition of RNA 3D structures and structure-based sequence alignment.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10850, doi. 10.1093/nar/gkae758

By:

Bohdan, Davyd R;
Bujnicki, Janusz M;
Baulin, Eugene F

Publication type:

Article

Modulation of dynamic DNA G-quadruplex structures in the hTERT promoter region by ligands.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10775, doi. 10.1093/nar/gkae754

By:

Karna, Deepak;
Liang, Lin;
Sharma, Grinsun;
Mandal, Shankar;
Asamitsu, Sefan;
Kawamoto, Yusuke;
Hashiya, Kaori;
Bando, Toshikazu;
Sugiyama, Hiroshi;
Mao, Hanbin

Publication type:

Article

Structural basis of DNA recognition by BEN domain proteins reveals a role for oligomerization in unmethylated DNA selection by BANP.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11349, doi. 10.1093/nar/gkae762

By:

Ren, Jiahao;
Wang, Junmeng;
Ren, Yanpeng;
Zhang, Yuyang;
Wei, Pengshuai;
Wang, Meng;
Zhang, Yimeng;
Li, Meng;
Yuan, Chuyan;
Gong, Haipeng;
Jiang, Junyi;
Wang, Zhanxin

Publication type:

Article

Structural basis for the concerted antiphage activity in the SIR2–HerA system.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11336, doi. 10.1093/nar/gkae750

By:

Liao, Fumeng;
Yu, Guimei;
Zhang, Chendi;
Liu, Zhikun;
Li, Xuzichao;
He, Qiuqiu;
Yin, Hang;
Liu, Xiang;
Li, Zhuang;
Zhang, Heng

Publication type:

Article

Machine learning unravels inherent structural patterns in Escherichia coli Hi-C matrices and predicts chromosome dynamics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10836, doi. 10.1093/nar/gkae749

By:

Bera, Palash;
Mondal, Jagannath

Publication type:

Article

Force-enhanced sensitive and specific detection of DNA-intercalative agents directly from microorganisms at single-molecule level.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. e86, doi. 10.1093/nar/gkae746

By:

Liu, Tianyu;
Cai, Teng;
Huo, Junfeng;
Liu, Hongwei;
Li, Aiying;
Yin, Meng;
Mei, Yan;
Zhou, Yueyue;
Fan, Sijun;
Lu, Yao;
Wan, Luosheng;
You, Huijuan;
Cai, Xiaofeng

Publication type:

Article

Long range segmentation of prokaryotic genomes by gene age and functionality.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11045, doi. 10.1093/nar/gkae745

By:

Wolf, Yuri I;
Schurov, Ilya V;
Makarova, Kira S;
Katsnelson, Mikhail I;
Koonin, Eugene V

Publication type:

Article

Identification of transcription factor co-binding patterns with non-negative matrix factorization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. e85, doi. 10.1093/nar/gkae743

By:

Rauluseviciute, Ieva;
Launay, Timothée;
Barzaghi, Guido;
Nikumbh, Sarvesh;
Lenhard, Boris;
Krebs, Arnaud Regis;
Castro-Mondragon, Jaime A;
Mathelier, Anthony

Publication type:

Article

Modulating bacterial function utilizing A knowledge base of transcriptional regulatory modules.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11362, doi. 10.1093/nar/gkae742

By:

Shin, Jongoh;
Zielinski, Daniel C;
Palsson, Bernhard O

Publication type:

Article

Synthesis of 2′-formamidonucleoside phosphoramidites for suppressing the seed-based off-target effects of siRNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10754, doi. 10.1093/nar/gkae741

By:

Nomura, Kohei;
An, Seongjin;
Kobayashi, Yoshiaki;
Kondo, Jiro;
Shi, Ting;
Murase, Hirotaka;
Nakamoto, Kosuke;
Kimura, Yasuaki;
Abe, Naoko;
Ui-Tei, Kumiko;
Abe, Hiroshi

Publication type:

Article

Structural basis of AUC codon discrimination during translation initiation in yeast.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11317, doi. 10.1093/nar/gkae737

By:

Villamayor-Belinchón, Laura;
Sharma, Prafful;
Gordiyenko, Yuliya;
Llácer, Jose L;
Hussain, Tanweer

Publication type:

Article

Unlocking precision in aptamer engineering: a case study of the thrombin binding aptamer illustrates why modification size, quantity, and position matter.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10823, doi. 10.1093/nar/gkae729

By:

Murray, Makay T;
Wetmore, Stacey D

Publication type:

Article

DipR, a GntR/FadR-family transcriptional repressor: regulatory mechanism and widespread distribution of the dip cluster for dipicolinic acid catabolism in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10951, doi. 10.1093/nar/gkae728

By:

Jiang, Yinhu;
Wang, Kexin;
Xu, Lu;
Xu, Lanyi;
Xu, Qimiao;
Mu, Yang;
Hong, Qing;
He, Jian;
Jiang, Jiandong;
Qiu, Jiguo

Publication type:

Article

Mechanism of structure-specific DNA binding by the FANCM branchpoint translocase.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11029, doi. 10.1093/nar/gkae727

By:

Abbouche, Lara;
Murphy, Vincent J;
Gao, Jixuan;
van Twest, Sylvie;
Sobinoff, Alexander P;
Auweiler, Karen M;
Pickett, Hilda A;
Bythell-Douglas, Rohan;
Deans, Andrew J

Publication type:

Article

Dispensability of HPF1 for cellular removal of DNA single-strand breaks.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10986, doi. 10.1093/nar/gkae708

By:

Hrychova, Kristyna;
Burdova, Kamila;
Polackova, Zuzana;
Giamaki, Despoina;
Valtorta, Beatrice;
Brazina, Jan;
Krejcikova, Katerina;
Kuttichova, Barbora;
Caldecott, Keith W;
Hanzlikova, Hana

Publication type:

Article

The impact of the embryonic DNA methylation program on CTCF-mediated genome regulation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10934, doi. 10.1093/nar/gkae724

By:

Monteagudo-Sánchez, Ana;
Richard Albert, Julien;
Scarpa, Margherita;
Noordermeer, Daan;
Greenberg, Maxim V C

Publication type:

Article

Replication fork stalling in late S-phase elicits nascent strand degradation by DNA mismatch repair.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10999, doi. 10.1093/nar/gkae721

By:

Colicino-Murbach, Erica;
Hathaway, Caitlin;
Dungrawala, Huzefa

Publication type:

Article

Heterochromatin protein 1 alpha (HP1α) undergoes a monomer to dimer transition that opens and compacts live cell genome architecture.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10918, doi. 10.1093/nar/gkae720

By:

Lou, Jieqiong;
Deng, Qiji;
Zhang, Xiaomeng;
Bell, Charles C;
Das, Andrew B;
Bediaga, Naiara G;
Zlatic, Courtney O;
Johanson, Timothy M;
Allan, Rhys S;
Griffin, Michael D W;
Paradkar, PrasadN;
Harvey, Kieran F;
Dawson, Mark A;
Hinde, Elizabeth

Publication type:

Article

Unexpected nuclear hormone receptor and chromatin dynamics regulate estrous cycle dependent gene expression.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10897, doi. 10.1093/nar/gkae714

By:

Jefferson, Wendy N;
Wang, Tianyuan;
Padilla-Banks, Elizabeth;
Williams, Carmen J

Publication type:

Article

Second generation lethality in RNAseH2a knockout zebrafish.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11014, doi. 10.1093/nar/gkae725

By:

Thomas, Ruth C;
Zaksauskaite, Ringaile;
Al-Kandari, Norah Y;
Hyde, Anne Cathrine;
Abugable, Arwa A;
El-Khamisy, Sherif F;
van Eeden, Freek J

Publication type:

Article

ALKBH5 governs human endoderm fate by regulating the DKK1/4-mediated Wnt/β-catenin activation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10879, doi. 10.1093/nar/gkae707

By:

Liang, Zechuan;
Huang, Tao;
Li, Wei;
Ma, Zhaoyi;
Wang, Kaipeng;
Zhai, Ziwei;
Fan, Yixin;
Fu, Yu;
Wang, Xiaomin;
Qin, Yue;
Wang, Bo;
Zhao, Chengchen;
Kuang, Junqi;
Pei, Duanqing

Publication type:

Article

Loss of DNA glycosylases improves health and cognitive function in a C. elegans model of human tauopathy.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10965, doi. 10.1093/nar/gkae705

By:

Tiwari, Vinod;
Buvarp, Elisabeth;
Borbolis, Fivos;
Puligilla, Chandrakala;
Croteau, Deborah L;
Palikaras, Konstantinos;
Bohr, Vilhelm A

Publication type:

Article

Structural basis for difunctional mechanism of m-AMSA against African swine fever virus pP1192R.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11301, doi. 10.1093/nar/gkae703

By:

Liu, Ruili;
Sun, Junqing;
Li, Lian-Feng;
Cheng, Yingxian;
Li, Meilin;
Fu, Lifeng;
Li, Su;
Peng, Guorui;
Wang, Yanjin;
Liu, Sheng;
Qu, Xiao;
Ran, Jiaqi;
Li, Xiaomei;
Pang, Erqi;
Qiu, Hua-Ji;
Wang, Yanli;
Qi, Jianxun;
Wang, Han;
Gao, George Fu

Publication type:

Article

Tracking live-cell single-molecule dynamics enables measurements of heterochromatin-associated protein–protein interactions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 10731, doi. 10.1093/nar/gkae692

By:

Chen, Ziyuan;
Seman, Melissa;
Fyodorova, Yekaterina;
Farhat, Ali;
Ames, Amanda;
Levashkevich, Alexander;
Biswas, Saikat;
Huang, Fengting;
Freddolino, Lydia;
Biteen, Julie S;
Ragunathan, Kaushik

Publication type:

Article

Global analysis of the RNA–RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11283, doi. 10.1093/nar/gkae668

By:

Hamrock, Fergal J;
Ryan, Daniel;
Shaibah, Ali;
Ershova, Anna S;
Mogre, Aalap;
Sulimani, Maha M;
Ben Taarit, Safa;
Reichardt, Sarah;
Hokamp, Karsten;
Westermann, Alexander J;
Kröger, Carsten

Publication type:

Article

LRPPRC and SLIRP synergize to maintain sufficient and orderly mammalian mitochondrial translation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 18, p. 11266, doi. 10.1093/nar/gkae662

By:

Rubalcava-Gracia, Diana;
Bubb, Kristina;
Levander, Fredrik;
Burr, Stephen P;
August, Amelie V;
Chinnery, Patrick F;
Koolmeister, Camilla;
Larsson, Nils-Göran

Publication type:

Article