Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 17

Results: 51

Cryo-EM structure of DNA polymerase of African swine fever virus.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10717, doi. 10.1093/nar/gkae739

By:

Kuai, Lu;
Sun, Junqing;
Peng, Qi;
Zhao, Xuejin;
Yuan, Bin;
Liu, Sheng;
Bi, Yuhai;
Shi, Yi

Publication type:

Article

Novel function of U7 snRNA in the repression of HERV1/LTR12s and lincRNAs in human cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10504, doi. 10.1093/nar/gkae738

By:

Plewka, Patrycja;
Szczesniak, Michal W;
Stepien, Agata;
Pasieka, Robert;
Wanowska, Elzbieta;
Makalowska, Izabela;
Raczynska, Katarzyna Dorota

Publication type:

Article

CRISPR-Cas target recognition for sensing viral and cancer biomarkers.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10040, doi. 10.1093/nar/gkae736

By:

Rahimi, Shadi;
Balusamy, Sri Renukadevi;
Perumalsamy, Haribalan;
Ståhlberg, Anders;
Mijakovic, Ivan

Publication type:

Article

Correction to 'DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum'.

Published in:: 2024
Publication type:: Correction Notice

The molecular mechanism for TERRA recruitment and annealing to telomeres.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10490, doi. 10.1093/nar/gkae732

By:

Wondimagegnhu, Bersabel;
Ma, Wen;
Paul, Tapas;
Liao, Ting-Wei;
Lee, Chun Ying;
Sanford, Samantha;
Opresko, Patricia L;
Myong, Sua

Publication type:

Article

Structural basis of Cas3 activation in type I-C CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10563, doi. 10.1093/nar/gkae723

By:

Kim, Do Yeon;
Lee, So Yeon;
Ha, Hyun Ji;
Park, Hyun Ho

Publication type:

Article

Metabolic RNA labeling in non-engineered cells following spontaneous uptake of fluorescent nucleoside phosphate analogues.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10102, doi. 10.1093/nar/gkae722

By:

Pfeiffer, Pauline;
Nilsson, Jesper R;
Gallud, Audrey;
Baladi, Tom;
Le, Hoang-Ngoan;
Bood, Mattias;
Lemurell, Malin;
Dahlén, Anders;
Grøtli, Morten;
Esbjörner, Elin K;
Wilhelmsson, L Marcus

Publication type:

Article

Clinically relevant mutations in regulatory regions of metabolic genes facilitate early adaptation to ciprofloxacin in Escherichia coli.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10385, doi. 10.1093/nar/gkae719

By:

Pal, Arijit;
Ghosh, Dipannita;
Thakur, Pratyusha;
Nagpal, Priya;
Irulappan, Madhumathi;
Maruthan, Karthik;
Mukherjee, Sanket;
Patil, Nikita G;
Dutta, Tanmay;
Veeraraghavan, Balaji;
Vivekanandan, Perumal

Publication type:

Article

Structural insights into RNA cleavage by a novel family of bacterial RNases.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10705, doi. 10.1093/nar/gkae717

By:

Wu, Ruoxi;
Ingle, Shakti;
Barnes, Sarah A;
Dahlin, Heather R;
Khamrui, Susmita;
Xiang, Yufei;
Shi, Yi;
Bechhofer, David H;
Lazarus, Michael B

Publication type:

Article

RudS: bacterial desulfidase responsible for tRNA 4-thiouridine de-modification.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10543, doi. 10.1093/nar/gkae716

By:

Jamontas, Rapolas;
Laurynėnas, Audrius;
Povilaitytė, Deimantė;
Meškys, Rolandas;
Aučynaitė, Agota

Publication type:

Article

NucleoFind: a deep-learning network for interpreting nucleic acid electron density.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. e84, doi. 10.1093/nar/gkae715

By:

Dialpuri, Jordan S;
Agirre, Jon;
Cowtan, Kathryn D;
Bond, Paul S

Publication type:

Article

N-terminal domain of polypyrimidine-tract binding protein is a dynamic folding platform for adaptive RNA recognition.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10683, doi. 10.1093/nar/gkae713

By:

Damberger, Fred F;
Krepl, Miroslav;
Arora, Rajika;
Beusch, Irene;
Maris, Christophe;
Dorn, Georg;
Šponer, Jiří;
Ravindranathan, Sapna;
Allain, Frédéric H-T

Publication type:

Article

Efficient circularization of protein-encoding RNAs via a novel cis-splicing system.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10400, doi. 10.1093/nar/gkae711

By:

Qi, Shaojun;
Wang, Huiming;
Liu, Guopeng;
Qin, Qianshan;
Gao, Peng;
Ying, Bo

Publication type:

Article

Systematic discovery of DNA-binding tandem repeat proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10464, doi. 10.1093/nar/gkae710

By:

Hu, Xiaoxuan;
Zhang, Xuechun;
Sun, Wen;
Liu, Chunhong;
Deng, Pujuan;
Cao, Yuanwei;
Zhang, Chenze;
Xu, Ning;
Zhang, Tongtong;
Zhang, Yong E;
Liu, Jun-Jie Gogo;
Wang, Haoyi

Publication type:

Article

Rapid profiling of transcription factor–cofactor interaction networks reveals principles of epigenetic regulation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10276, doi. 10.1093/nar/gkae706

By:

Inge, Melissa M;
Miller, Rebekah;
Hook, Heather;
Bray, David;
Keenan, Jessica L;
Zhao, Rose;
Gilmore, Thomas D;
Siggers, Trevor

Publication type:

Article

Meiotic chromatin-associated HSF5 is indispensable for pachynema progression and male fertility.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10255, doi. 10.1093/nar/gkae701

By:

Luo, Chunhai;
Xu, Haoran;
Yu, Ziqi;
Liu, Dalin;
Zhong, Danyang;
Zhou, Shumin;
Zhang, Beibei;
Zhan, Junfeng;
Sun, Fei

Publication type:

Article

ADARp150 counteracts whole genome duplication.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10370, doi. 10.1093/nar/gkae700

By:

van Gemert, Frank;
Drakaki, Alexandra;
Lozano, Isabel Morales;
de Groot, Daniël;
Uiterkamp, Maud Schoot;
Proost, Natalie;
Lieftink, Cor;
van de Ven, Marieke;
Beijersbergen, Roderick L;
Jacobs, Heinz;
te Riele, Hein

Publication type:

Article

Network medicine-based epistasis detection in complex diseases: ready for quantum computing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10144, doi. 10.1093/nar/gkae697

By:

Hoffmann, Markus;
Poschenrieder, Julian M;
Incudini, Massimiliano;
Baier, Sylvie;
Fritz, Amelie;
Maier, Andreas;
Hartung, Michael;
Hoffmann, Christian;
Trummer, Nico;
Adamowicz, Klaudia;
Picciani, Mario;
Scheibling, Evelyn;
Harl, Maximilian V;
Lesch, Ingmar;
Frey, Hunor;
Kayser, Simon;
Wissenberg, Paul;
Schwartz, Leon;
Hafner, Leon;
Acharya, Aakriti

Publication type:

Article

The enhancer RNA, AANCR, regulates APOE expression in astrocytes and microglia.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10235, doi. 10.1093/nar/gkae696

By:

Wan, Ma;
Liu, Yaojuan;
Li, Dongjun;
Snyder, Ryan J;
Elkin, Lillian B;
Day, Christopher R;
Rodriguez, Joseph;
Grunseich, Christopher;
Mahley, Robert W;
Watts, Jason A;
Cheung, Vivian G

Publication type:

Article

Chemical synthesis of 2″OMeNAD+ and its deployment as an RNA 2′-phosphotransferase (Tpt1) 'poison' that traps the enzyme on its abortive RNA-2′-PO4-(ADP-2″OMe-ribose) reaction intermediate.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10533, doi. 10.1093/nar/gkae695

By:

Arnold, Jakob;
Ghosh, Shreya;
Kasprzyk, Renata;
Brakonier, Marcel;
Hanna, Markus;
Marx, Andreas;
Shuman, Stewart

Publication type:

Article

Invention of circRNA promoting RNA to specifically promote circRNA production.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. e83, doi. 10.1093/nar/gkae693

By:

He, Zhilin;
Ji, Haofei;
Xia, Bei;
Cao, Xiuen;
Huang, Ying;
Zhu, Qubo

Publication type:

Article

Template-independent synthesis and 3′-end labelling of 2′-modified oligonucleotides with terminal deoxynucleotidyl transferases.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10085, doi. 10.1093/nar/gkae691

By:

Sun, Leping;
Xiang, Yuming;
Du, Yuhui;
Wang, Yangming;
Ma, Jiezhao;
Wang, Yaxin;
Wang, Xueting;
Wang, Guangyuan;
Chen, Tingjian

Publication type:

Article

Genetic–epigenetic interplay in the determination of plant 3D genome organization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10220, doi. 10.1093/nar/gkae690

By:

He, Xiaoning;
Dias Lopes, Chloé;
Pereyra-Bistrain, Leonardo I;
Huang, Ying;
An, Jing;
Chaouche, Rim Brik;
Zalzalé, Hugo;
Wang, Qingyi;
Ma, Xing;
Antunez-Sanchez, Javier;
Bergounioux, Catherine;
Piquerez, Sophie;
Fragkostefanakis, Sotirios;
Zhang, Yijing;
Zheng, Shaojian;
Crespi, Martin;
Mahfouz, Magdy M;
Mathieu, Olivier;
Ariel, Federico;
Gutierrez-Marcos, Jose

Publication type:

Article

An integrated machine-learning model to predict nucleosome architecture.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10132, doi. 10.1093/nar/gkae689

By:

Sala, Alba;
Labrador, Mireia;
Buitrago, Diana;
De Jorge, Pau;
Battistini, Federica;
Heath, Isabelle Brun;
Orozco, Modesto

Publication type:

Article

Improved sub-genomic RNA prediction with the ARTIC protocol.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. e82, doi. 10.1093/nar/gkae687

By:

Baudeau, Thomas;
Sahlin, Kristoffer

Publication type:

Article

Efficacy, biodistribution and safety comparison of chemically modified antisense oligonucleotides in the retina.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10447, doi. 10.1093/nar/gkae686

By:

Vázquez-Domínguez, Irene;
Anido, Alejandro Allo;
Duijkers, Lonneke;
Hoppenbrouwers, Tamara;
Hoogendoorn, Anita D M;
Koster, Céline;
Collin, Rob W J;
Garanto, Alejandro

Publication type:

Article

Methods for constructing and evaluating consensus genomic interval sets.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10119, doi. 10.1093/nar/gkae685

By:

Rymuza, Julia;
Sun, Yuchen;
Zheng, Guangtao;
LeRoy, Nathan J;
Murach, Maria;
Phan, Neil;
Zhang, Aidong;
Sheffield, Nathan C

Publication type:

Article

Advancing quantitative PCR with color cycle multiplex amplification.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. e81, doi. 10.1093/nar/gkae683

By:

Chen, Wei;
Zhang, Kerou;
Huang, Fei;
Zhao, Lan;
Waldren, George C;
Jiang, Qi;
Chen, Sherry X;
Wang, Bonnie;
Guo, Wei;
Zhang, David Y;
Zhang, Jinny X

Publication type:

Article

Rational design of base, sugar and backbone modifications improves ADAR-mediated RNA editing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10068, doi. 10.1093/nar/gkae681

By:

Lu, Genliang;
Shivalila, Chikdu;
Monian, Prashant;
Yu, Hui;
Harding, Ian;
Briem, Stearne;
Byrne, Michael;
Faraone, Alyse;
Friend, Stephen;
Huth, Olivia;
Iwamoto, Naoki;
Kawamoto, Tomomi;
Kumarasamy, Jayakanthan;
Lamattina, Anthony;
Longo, Kenneth;
McCarthy, Leah;
McGlynn, Andrew;
Molski, Allison;
Pan, Qianli;
Pu, Tom

Publication type:

Article

Y-switch: a spring-loaded synthetic gene switch for robust DNA/RNA signal amplification and detection.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. e80, doi. 10.1093/nar/gkae680

By:

Gupta, Krishna;
Krieg, Elisha

Publication type:

Article

Discovery of numerous novel Helitron-like elements in eukaryote genomes using HELIANO.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. e79, doi. 10.1093/nar/gkae679

By:

Li, Zhen;
Gilbert, Clément;
Peng, Haoran;
Pollet, Nicolas

Publication type:

Article

The C-terminal 4CXXC-type zinc finger domain of CDCA7 recognizes hemimethylated DNA and modulates activities of chromatin remodeling enzyme HELLS.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10194, doi. 10.1093/nar/gkae677

By:

Shinkai, Akeo;
Hashimoto, Hideharu;
Shimura, Chikako;
Fujimoto, Hiroaki;
Fukuda, Kei;
Horikoshi, Naoki;
Okano, Masaki;
Niwa, Hitoshi;
Debler, Erik W;
Kurumizaka, Hitoshi;
Shinkai, Yoichi

Publication type:

Article

The SAVED domain of the type III CRISPR protease CalpL is a ring nuclease.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10520, doi. 10.1093/nar/gkae676

By:

Binder, Sophie C;
Schneberger, Niels;
Schmitz, Maximilian;
Engeser, Marianne;
Geyer, Matthias;
Rouillon, Christophe;
Hagelueken, Gregor

Publication type:

Article

A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10431, doi. 10.1093/nar/gkae675

By:

Boyd, Caroline M;
Seed, Kimberley D

Publication type:

Article

Transposition with Tn3-family elements occurs through interaction with the host β-sliding clamp processivity factor.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10416, doi. 10.1093/nar/gkae674

By:

Tang, Yu;
Zhang, Jianfeng;
Guan, Jiahao;
Liang, Wei;
Petassi, Michael T;
Zhang, Yumeng;
Jiang, Xiaofei;
Wang, Minggui;
Wu, Wenjuan;
Ou, Hong-Yu;
Peters, Joseph E

Publication type:

Article

Senataxin RNA/DNA helicase promotes replication restart at co-transcriptional R-loops to prevent MUS81-dependent fork degradation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10355, doi. 10.1093/nar/gkae673

By:

Rao, Satyajeet;
Andrs, Martin;
Shukla, Kaustubh;
Isik, Esin;
König, Christiane;
Schneider, Stefan;
Bauer, Michael;
Rosano, Vinicio;
Prokes, Jiri;
Müller, Anne;
Janscak, Pavel

Publication type:

Article

Redundant but essential functions of PARP1 and PARP2 in DNA ligase I-independent DNA replication.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10341, doi. 10.1093/nar/gkae672

By:

Bhandari, Seema Khattri;
Wiest, Nathaniel;
Sallmyr, Annahita;
Du, Ruofei;
Tomkinson, Alan E

Publication type:

Article

Structures of the mitochondrial single-stranded DNA binding protein with DNA and DNA polymerase γ.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10329, doi. 10.1093/nar/gkae670

By:

Riccio, Amanda A;
Bouvette, Jonathan;
Pedersen, Lars C;
Somai, Shruti;
Dutcher, Robert C;
Borgnia, Mario J;
Copeland, William C

Publication type:

Article

The characteristics of CTCF binding sequences contribute to enhancer blocking activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10180, doi. 10.1093/nar/gkae666

By:

Tsang, Felice H;
Stolper, Rosa J;
Hanifi, Muhammad;
Cornell, Lucy J;
Francis, Helena S;
Davies, Benjamin;
Higgs, Douglas R;
Kassouf, Mira T

Publication type:

Article

DNA damage-induced phosphorylation of a replicative DNA helicase results in inhibition of DNA replication through attenuation of helicase function.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10311, doi. 10.1093/nar/gkae663

By:

Homiski, Caleb;
Dey-Rao, Rama;
Shen, Shichen;
Qu, Jun;
Melendy, Thomas

Publication type:

Article

PHF8 facilitates transcription recovery following DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10297, doi. 10.1093/nar/gkae661

By:

Kim, Jung Eun;
Pan, Xiyue;
Tse, Kwan Yiu;
Chan, Henry Hei;
Dong, Chao;
Huen, Michael Shing Yan

Publication type:

Article

The RNA helicase DDX39 contributes to the nuclear export of spliceosomal U snRNA by loading of PHAX onto RNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10668, doi. 10.1093/nar/gkae622

By:

Taniguchi, Ichiro;
Hirose, Tetsuro;
Ohno, Mutsuhito

Publication type:

Article

A novel interaction between the 5′ untranslated region of the Chikungunya virus genome and Musashi RNA binding protein is essential for efficient virus genome replication.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10654, doi. 10.1093/nar/gkae619

By:

Sun, Kaiwen;
Appadoo, Francesca;
Liu, Yuqian;
Müller, Marietta;
Macfarlane, Catriona;
Harris, Mark;
Tuplin, Andrew

Publication type:

Article

Trypanosome mRNA recapping is triggered by hypermethylation originating from cap 4.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10645, doi. 10.1093/nar/gkae614

By:

Ignatochkina, Anna V;
Iguchi, Jesavel A;
Kore, Anilkumar R;
Ho, C Kiong

Publication type:

Article

High resolution landscape of ribosomal RNA processing and surveillance.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10630, doi. 10.1093/nar/gkae606

By:

An, Weidong;
Yan, Yunxiao;
Ye, Keqiong

Publication type:

Article

Molecular basis for cA6 synthesis by a type III-A CRISPR–Cas enzyme and its conversion to cA4 production.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10619, doi. 10.1093/nar/gkae603

By:

Goswami, Hemant N;
Ahmadizadeh, Fozieh;
Wang, Bing;
Addo-Yobo, Doreen;
Zhao, Yu;
Whittington, A Carl;
He, Huan;
Terns, Michael P;
Li, Hong

Publication type:

Article

A new approach to RNA synthesis: immobilization of stably and functionally co-tethered promoter DNA and T7 RNA polymerase.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10607, doi. 10.1093/nar/gkae599

By:

MalagodaPathiranage, Kithmie;
Banerjee, Ruptanu;
Martin, Craig T

Publication type:

Article

Cas9 interaction with the tracrRNA nexus modulates the repression of type II-A CRISPR-cas genes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10595, doi. 10.1093/nar/gkae597

By:

Kim, Hyejin;
Marraffini, Luciano A

Publication type:

Article

tRNA expression and modification landscapes, and their dynamics during zebrafish embryo development.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10575, doi. 10.1093/nar/gkae595

By:

Rappol, Tom;
Waldl, Maria;
Chugunova, Anastasia;
Hofacker, Ivo L;
Pauli, Andrea;
Vilardo, Elisa

Publication type:

Article

DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 17, p. 10161, doi. 10.1093/nar/gkae585

By:

Bonnell, Victoria A;
Zhang, Yuning;
Brown, Alan S;
Horton, John;
Josling, Gabrielle A;
Chiu, Tsu-Pei;
Rohs, Remo;
Mahony, Shaun;
Gordân, Raluca;
Llinás, Manuel

Publication type:

Article