Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 16

Results: 50

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9978, doi. 10.1093/nar/gkae698

By:

Hicks, Chad W;
Rahman, Sanim;
Gloor, Susan L;
Fields, James K;
Husby, Natalia Ledo;
Vaidya, Anup;
Maier, Keith E;
Morgan, Michael;
Keogh, Michael-Christopher;
Wolberger, Cynthia

Publication type:

Article

A new perspective on microRNA-guided gene regulation specificity, and its potential generalization to transcription factors and RNA-binding proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9360, doi. 10.1093/nar/gkae694

By:

Seitz, Hervé

Publication type:

Article

Induction of bacterial expression at the mRNA level by light.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 10017, doi. 10.1093/nar/gkae678

By:

Ranzani, Américo T;
Buchholz, Konrad;
Blackholm, Marius;
Kopkin, Hayat;
Möglich, Andreas

Publication type:

Article

Discovery of antiphage systems in the lactococcal plasmidome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9760, doi. 10.1093/nar/gkae671

By:

Grafakou, Andriana;
Mosterd, Cas;
Beck, Matthias H;
Kelleher, Philip;
McDonnell, Brian;
de Waal, Paul P;
van Rijswijck, Irma M H;
van Peij, Noël N M E;
Cambillau, Christian;
Mahony, Jennifer;
van Sinderen, Douwe

Publication type:

Article

CoPixie, a novel algorithm for single-particle track colocalization, enables efficient quantification of telomerase dynamics at telomeres.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9417, doi. 10.1093/nar/gkae669

By:

Prince, Samuel;
Maguemoun, Kamélia;
Ferdebouh, Mouna;
Querido, Emmanuelle;
Derumier, Amélie;
Tremblay, Stéphanie;
Chartrand, Pascal

Publication type:

Article

CRISPR perfect adaptation for robust control of cellular immune and apoptotic responses.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 10005, doi. 10.1093/nar/gkae665

By:

Zhang, Yichi;
Zhang, Shuyi

Publication type:

Article

H3T11 phosphorylation by CKII is required for heterochromatin formation in Neurospora.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9536, doi. 10.1093/nar/gkae664

By:

Tian, Yuan;
Zhang, Chengcheng;
Tian, Xiang;
Zhang, Lu;
Yin, Tong;
Dang, Yunkun;
Liu, Yi;
Lou, Huiqiang;
He, Qun

Publication type:

Article

Unraveling the structure and function of a novel SegC protein interacting with the SegAB chromosome segregation complex in Archaea.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9966, doi. 10.1093/nar/gkae660

By:

Lin, Min-Guan;
Yen, Cheng-Yi;
Shen, Yo-You;
Huang, Yu-Sung;
Ng, Irene W;
Barillà, Daniela;
Sun, Yuh-Ju;
Hsiao, Chwan-Deng

Publication type:

Article

The complete pathway for co-transcriptional mRNA maturation within a large protein of a non-segmented negative-strand RNA virus.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9803, doi. 10.1093/nar/gkae659

By:

Ogino, Minako;
Green, Todd J;
Ogino, Tomoaki

Publication type:

Article

The cullin Rtt101 promotes ubiquitin-dependent DNA−protein crosslink repair across the cell cycle.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9654, doi. 10.1093/nar/gkae658

By:

Noireterre, Audrey;
Soudet, Julien;
Bagdiul, Ivona;
Stutz, Françoise

Publication type:

Article

Structural insights into the assembly of type IIA topoisomerase DNA cleavage-religation center.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9788, doi. 10.1093/nar/gkae657

By:

Liu, Ko-Ting;
Chen, Shin-Fu;
Chan, Nei-Li

Publication type:

Article

Engineered transcription activator-like effector dimer proteins confer DNA loop-dependent gene repression comparable to Lac repressor.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9996, doi. 10.1093/nar/gkae656

By:

Becker, Nicole A;
Peters, Justin P;
Lewis, Elizabeth;
Daby, Camden L;
Clark, Karl;
Maher, L James

Publication type:

Article

Stress granule formation helps to mitigate neurodegeneration.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9745, doi. 10.1093/nar/gkae655

By:

Glineburg, M Rebecca;
Yildirim, Evrim;
Gomez, Nicolas;
Rodriguez, Genesis;
Pak, Jaclyn;
Li, Xingli;
Altheim, Christopher;
Waksmacki, Jacob;
McInerney, Gerald M;
Barmada, Sami J;
Todd, Peter K

Publication type:

Article

Loss of the DNA repair protein, polynucleotide kinase/phosphatase, activates the type 1 interferon response independent of ionizing radiation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9630, doi. 10.1093/nar/gkae654

By:

Kate, Wisdom Deebeke;
Fanta, Mesfin;
Weinfeld, Michael

Publication type:

Article

Central role of SUMOylation in the regulation of chromatin interactions and transcriptional outputs of the androgen receptor in prostate cancer cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9519, doi. 10.1093/nar/gkae653

By:

Launonen, Kaisa-Mari;
Varis, Vera;
Aaltonen, Niina;
Niskanen, Einari A;
Varjosalo, Markku;
Paakinaho, Ville;
Palvimo, Jorma J

Publication type:

Article

Understanding the relationship between sequences and kinetics of DNA strand displacements.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9407, doi. 10.1093/nar/gkae652

By:

Long, Da;
Shi, Peichen;
Xu, Xin;
Ren, Jiayi;
Chen, Yuqing;
Guo, Shihui;
Wang, Xinchang;
Cao, Xiaoyu;
Yang, Liulin;
Tian, Zhongqun

Publication type:

Article

Quantifying allele-specific CRISPR editing activity with CRISPECTOR2.0.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. e78, doi. 10.1093/nar/gkae651

By:

Assa, Guy;
Kalter, Nechama;
Rosenberg, Michael;
Beck, Avigail;
Markovich, Oshry;
Gontmakher, Tanya;
Hendel, Ayal;
Yakhini, Zohar

Publication type:

Article

TRF2–RAP1 represses RAD51-dependent homology-directed telomere repair by promoting BLM-mediated D-loop unwinding and inhibiting BLM–DNA2-dependent 5′-end resection.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9695, doi. 10.1093/nar/gkae642

By:

Liang, Fengshan;
Rai, Rekha;
Sodeinde, Tori;
Chang, Sandy

Publication type:

Article

Solution structures and effects of a platinum compound successively bound MYC G-quadruplex.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9397, doi. 10.1093/nar/gkae649

By:

Liu, Wenting;
Zhu, Bo-Chen;
Liu, Liu-Yi;
Xia, Xiao- Yu;
Jang, Jinho;
Dickerhoff, Jonathan;
Yang, Danzhou;
Mao, Zong-Wan

Publication type:

Article

RNA encoded peptide barcodes enable efficient in vivo screening of RNA delivery systems.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9384, doi. 10.1093/nar/gkae648

By:

Odunze, Uchechukwu;
Rustogi, Nitin;
Devine, Paul;
Miller, Lorraine;
Pereira, Sara;
Vashist, Surender;
Snijder, Harm Jan;
Corkill, Dominic;
Sabirsh, Alan;
Douthwaite, Julie;
Bond, Nick;
Desai, Arpan

Publication type:

Article

HYENA detects oncogenes activated by distal enhancers in cancer.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. e77, doi. 10.1093/nar/gkae646

By:

Yu, Anqi;
Yesilkanal, Ali E;
Thakur, Ashish;
Wang, Fan;
Yang, Yang;
Phillips, William;
Wu, Xiaoyang;
Muir, Alexander;
He, Xin;
Spitz, Francois;
Yang, Lixing

Publication type:

Article

The human mitochondrial translation factor TACO1 alleviates mitoribosome stalling at polyproline stretches.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9710, doi. 10.1093/nar/gkae645

By:

Brischigliaro, Michele;
Krüger, Annika;
Moran, J Conor;
Antonicka, Hana;
Ahn, Ahram;
Shoubridge, Eric A;
Rorbach, Joanna;
Barrientos, Antoni

Publication type:

Article

Molecular basis of RNA recombination in the 3′UTR of chikungunya virus genome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9727, doi. 10.1093/nar/gkae650

By:

Bardossy, Eugenia S;
Volpe, Sebastiano;
Suzuki, Yasutsugu;
Merwaiss, Fernando;
Faraj, Santiago;
Montes, Mónica;
Saleh, Maria-Carla;
Alvarez, Diego E;
Filomatori, Claudia V

Publication type:

Article

ADBP-1 regulates ADR-2 nuclear localization to control editing substrate selection.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9501, doi. 10.1093/nar/gkae641

By:

Eliad, Berta;
Schneider, Noa;
Ben-Naim Zgayer, Orna;
Amichan, Yarden;
Glaser, Fabian;
Erdmann, Emily A;
Rajendren, Suba;
Hundley, Heather A;
Lamm, Ayelet T

Publication type:

Article

High ionic strength vector formulations enhance gene transfer to airway epithelia.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9369, doi. 10.1093/nar/gkae640

By:

Cooney, Ashley L;
Loza, Laura Marquez;
Najdawi, Kenan;
Brommel, Christian M;
McCray, Paul B;
Sinn, Patrick L

Publication type:

Article

Highly sensitive mapping of in vitro type II topoisomerase DNA cleavage sites with SHAN-seq.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9777, doi. 10.1093/nar/gkae638

By:

Morgan, Ian L;
McKie, Shannon J;
Kim, Rachel;
Seol, Yeonee;
Xu, Jing;
Harami, Gabor M;
Maxwell, Anthony;
Neuman, Keir C

Publication type:

Article

The translesion polymerase Pol Y1 is a constitutive component of the B. subtilis replication machinery.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9613, doi. 10.1093/nar/gkae637

By:

Marrin, McKayla E;
Foster, Michael R;
Santana, Chloe M;
Choi, Yoonhee;
Jassal, Avtar S;
Rancic, Sarah J;
Greenwald, Carolyn R;
Drucker, Madeline N;
Feldman, Denholm T;
Thrall, Elizabeth S

Publication type:

Article

High-throughput determination of RNA tertiary contact thermodynamics by quantitative DMS chemical mapping.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9953, doi. 10.1093/nar/gkae633

By:

Lange, Bret;
Gil, Ricardo G;
Anderson, Gavin S;
Yesselman, Joseph D

Publication type:

Article

MADDD-seq, a novel massively parallel sequencing tool for simultaneous detection of DNA damage and mutations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. e76, doi. 10.1093/nar/gkae632

By:

Vermulst, Marc;
Paskvan, Samantha L;
Chung, Claire S;
Franke, Kathryn;
Clegg, Nigel;
Minot, Sam;
Madeoy, Jennifer;
Long, Annalyssa S;
Gout, Jean-Francois;
Bielas, Jason H

Publication type:

Article

A UTP3-dependent nucleolar translocation pathway facilitates pre-rRNA 5′ETS processing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9671, doi. 10.1093/nar/gkae631

By:

Bao, Jiayang;
Su, Baochun;
Chen, Zheyan;
Sun, Zhaoxiang;
Peng, Jinrong;
Zhao, Shuyi

Publication type:

Article

CLOCI: unveiling cryptic fungal gene clusters with generalized detection.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. e75, doi. 10.1093/nar/gkae625

By:

Konkel, Zachary;
Kubatko, Laura;
Slot, Jason C

Publication type:

Article

Differential processing of RNA polymerase II at DNA damage correlates with transcription-coupled repair syndrome severity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9596, doi. 10.1093/nar/gkae618

By:

Gonzalo-Hansen, Camila;
Steurer, Barbara;
Janssens, Roel C;
Zhou, Di;
van Sluis, Marjolein;
Lans, Hannes;
Marteijn, Jurgen A

Publication type:

Article

The critical role of the iron–sulfur cluster and CTC components in DOG-1/BRIP1 function in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9586, doi. 10.1093/nar/gkae617

By:

Li, Xiao;
Perdomo, Ivette Maria Menendez;
Rodrigues Alves Barbosa, Victoria;
Diao, Catherine;
Tarailo-Graovac, Maja

Publication type:

Article

Instability throughout the Saccharomyces cerevisiae genome resulting from Pms1 endonuclease deficiency.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9574, doi. 10.1093/nar/gkae616

By:

Lujan, Scott A;
Garbacz, Marta A;
Liberti, Sascha E;
Burkholder, Adam B;
Kunkel, Thomas A

Publication type:

Article

Adenovirus small E1A directs activation of Alu transcription at YAP/TEAD- and AP-1-bound enhancers through interactions with the EP400 chromatin remodeler.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9481, doi. 10.1093/nar/gkae615

By:

Cantarella, Simona;
Vezzoli, Marco;
Carnevali, Davide;
Morselli, Marco;
Zemke, Nathan R;
Montanini, Barbara;
Daussy, Coralie F;
Wodrich, Harald;
Teichmann, Martin;
Pellegrini, Matteo;
Berk, Arnold J;
Dieci, Giorgio;
Ferrari, Roberto

Publication type:

Article

CRISPR-Cas12a exhibits metal-dependent specificity switching.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9343, doi. 10.1093/nar/gkae613

By:

Nguyen, Giang T;
Schelling, Michael A;
Raju, Akshara;
Buscher, Kathryn A;
Sritharan, Aneisha;
Sashital, Dipali G

Publication type:

Article

DNA cytosine methyltransferases differentially regulate genome-wide hypermutation and interhomolog recombination in Trichoderma reesei meiosis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9551, doi. 10.1093/nar/gkae611

By:

Jovanska, Lavernchy;
Lin, I-Chen;
Yao, Jhong-Syuan;
Chen, Chia-Ling;
Liu, Hou-Cheng;
Li, Wan-Chen;
Chuang, Yu-Chien;
Chuang, Chi-Ning;
Yu, Albert Chen-Hsin;
Lin, Hsin-Nan;
Pong, Wen-Li;
Yu, Chang-I;
Su, Ching-Yuan;
Chen, Yi-Ping;
Chen, Ruey-Shyang;
Hsueh, Yi-Ping;
Yuan, Hanna S;
Timofejeva, Ljudmilla;
Wang, Ting-Fang

Publication type:

Article

GSearch: ultra-fast and scalable genome search by combining K-mer hashing with hierarchical navigable small world graphs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. e74, doi. 10.1093/nar/gkae609

By:

Zhao, Jianshu;
Both, Jean Pierre;
Rodriguez-R, Luis M;
Konstantinidis, Konstantinos T

Publication type:

Article

BOD1L mediates chromatin binding and non-canonical function of H3K4 methyltransferase SETD1A.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9463, doi. 10.1093/nar/gkae605

By:

Hoshii, Takayuki;
Kikuchi, Sota;
Kujirai, Tomoya;
Masuda, Takeshi;
Ito, Tomoko;
Yasuda, Satoshi;
Matsumoto, Makoto;
Rahmutulla, Bahityar;
Fukuyo, Masaki;
Murata, Takeshi;
Kurumizaka, Hitoshi;
Kaneda, Atsushi

Publication type:

Article

Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. e73, doi. 10.1093/nar/gkae602

By:

Thiel, Bernhard C;
Bussi, Giovanni;
Poblete, Simón;
Hofacker, Ivo L

Publication type:

Article

SMCHD1 activates the expression of genes required for the expansion of human myoblasts.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9450, doi. 10.1093/nar/gkae600

By:

Wong, Matthew Man-Kin;
Hachmer, Sarah;
Gardner, Ed;
Runfola, Valeria;
Arezza, Eric;
Megeney, Lynn A;
Emerson, Charles P;
Gabellini, Davide;
Dilworth, F Jeffrey

Publication type:

Article

CyCoNP lncRNA establishes cis and trans RNA–RNA interactions to supervise neuron physiology.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9936, doi. 10.1093/nar/gkae590

By:

Desideri, Fabio;
Grazzi, Alessandro;
Lisi, Michela;
Setti, Adriano;
Santini, Tiziana;
Colantoni, Alessio;
Proietti, Gabriele;
Carvelli, Andrea;
Tartaglia, Gian Gaetano;
Ballarino, Monica;
Bozzoni, Irene

Publication type:

Article

Loss of Lamin A leads to the nuclear translocation of AGO2 and compromised RNA interference.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9917, doi. 10.1093/nar/gkae589

By:

Lobo, Vivian;
Nowak, Iwona;
Fernandez, Carola;
Correa Muler, Ana Iris;
Westholm, Jakub O;
Huang, Hsiang-Chi;
Fabrik, Ivo;
Huynh, Hang T;
Shcherbinina, Evgeniia;
Poyraz, Melis;
Härtlova, Anetta;
Benhalevy, Daniel;
Angeletti, Davide;
Sarshad, Aishe A

Publication type:

Article

Small RNA-mediated genetic switches coordinate ALG-3/4 small RNA pathway function.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9431, doi. 10.1093/nar/gkae586

By:

Sen, Trilotma;
McCormick, Cara;
Rogers, Alicia K

Publication type:

Article

Asymmetric bulges within hairpin RNA transgenes influence small RNA size, secondary siRNA production and viral defence.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9904, doi. 10.1093/nar/gkae573

By:

Zhang, Daai;
Jue, Dengwei;
Smith, Neil;
Zhong, Chengcheng;
Finnegan, E Jean;
de Feyter, Robert;
Wang, Ming-Bo;
Greaves, Ian

Publication type:

Article

Phosphorylation of the nuclear poly(A) binding protein (PABPN1) during mitosis protects mRNA from hyperadenylation and maintains transcriptome dynamics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9886, doi. 10.1093/nar/gkae562

By:

Gordon, Jackson M;
Phizicky, David V;
Schärfen, Leonard;
Brown, Courtney L;
Arias Escayola, Dahyana;
Kanyo, Jean;
Lam, TuKiet T;
Simon, Matthew D;
Neugebauer, Karla M

Publication type:

Article

RESC14 and RESC8 cooperate to mediate RESC function and dynamics during trypanosome RNA editing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9867, doi. 10.1093/nar/gkae561

By:

Wackowski, Katherine;
Zhu, Xiaoyu;
Shen, Shichen;
Zhang, Ming;
Qu, Jun;
Read, Laurie K

Publication type:

Article

Resolution of ribosomal stalling by EF-P and ABCF ATPases YfmR and YkpA/YbiT.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9854, doi. 10.1093/nar/gkae556

By:

Takada, Hiraku;
Fujiwara, Keigo;
Atkinson, Gemma C;
Chiba, Shinobu;
Hauryliuk, Vasili

Publication type:

Article

Structure and RNA-binding of the helically extended Roquin CCCH-type zinc finger.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9838, doi. 10.1093/nar/gkae555

By:

Tants, Jan-Niklas;
Oberstrass, Lasse;
Weigand, Julia E;
Schlundt, Andreas

Publication type:

Article

Mapping the structural landscape of the yeast Ty3 retrotransposon RNA genome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 16, p. 9821, doi. 10.1093/nar/gkae494

By:

Andrzejewska-Romanowska, Angelika;
Gumna, Julita;
Tykwińska, Ewa;
Pachulska-Wieczorek, Katarzyna

Publication type:

Article