Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 15

Results: 51

Correction to 'SENEBLOC, a long non-coding RNA suppresses senescence via p53-dependent and independent mechanisms'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Cytosine analogues as DNA methyltransferase substrates'.

Published in:: 2024
Publication type:: Correction Notice

A single CAA interrupt in a DNA three-way junction containing a CAG repeat hairpin results in parity-dependent trapping.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9317, doi. 10.1093/nar/gkae644

By:

Cadden, Gillian M;
Wilken, Svea J;
Magennis, Steven W

Publication type:

Article

Targeting DNA junction sites by bis-intercalators induces topological changes with potent antitumor effects.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9303, doi. 10.1093/nar/gkae643

By:

Huang, Shih-Chun;
Chen, Chia-Wei;
Satange, Roshan;
Hsieh, Chang-Chih;
Chang, Chih-Chun;
Wang, Shun-Ching;
Peng, Chi-Li;
Chen, Tai-Lin;
Chiang, Ming-Hsi;
Horng, Yih-Chern;
Hou, Ming-Hon

Publication type:

Article

Site-specific N-alkylation of DNA oligonucleotide nucleobases by DNAzyme-catalyzed reductive amination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8702, doi. 10.1093/nar/gkae639

By:

Boyd, Robert D;
Kennebeck, Morgan M;
Miranda, Aurora A;
Liu, Zehui;
Silverman, Scott K

Publication type:

Article

DdrC, a unique DNA repair factor from D. radiodurans, senses and stabilizes DNA breaks through a novel lesion-recognition mechanism.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9282, doi. 10.1093/nar/gkae635

By:

Szabla, Robert;
Li, Mingyi;
Warner, Victoria;
Song, Yifeng;
Junop, Murray

Publication type:

Article

Structural analysis of the BisI family of modification dependent restriction endonucleases.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9103, doi. 10.1093/nar/gkae634

By:

Szafran, Katarzyna;
Rafalski, Dominik;
Skowronek, Krzysztof;
Wojciechowski, Marek;
Kazrani, Asgar Abbas;
Gilski, Mirosław;
Xu, Shuang-yong;
Bochtler, Matthias

Publication type:

Article

Ribosomal protein RPL39L is an efficiency factor in the cotranslational folding of a subset of proteins with alpha helical domains.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9028, doi. 10.1093/nar/gkae630

By:

Banerjee, Arka;
Ataman, Meric;
Smialek, Maciej Jerzy;
Mookherjee, Debdatto;
Rabl, Julius;
Mironov, Aleksei;
Mues, Lea;
Enkler, Ludovic;
Coto-Llerena, Mairene;
Schmidt, Alexander;
Boehringer, Daniel;
Piscuoglio, Salvatore;
Spang, Anne;
Mittal, Nitish;
Zavolan, Mihaela

Publication type:

Article

mRNA-specific readthrough of nonsense codons by antisense oligonucleotides (R-ASOs).

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8687, doi. 10.1093/nar/gkae624

By:

Susorov, Denis;
Echeverria, Dimas;
Khvorova, Anastasia;
Korostelev, Andrei A

Publication type:

Article

Interpretable deep residual network uncovers nucleosome positioning and associated features.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8734, doi. 10.1093/nar/gkae623

By:

Masoudi-Sobhanzadeh, Yosef;
Li, Shuxiang;
Peng, Yunhui;
Panchenko, Anna R

Publication type:

Article

Unraveling the interplay between a small RNA and RNase E in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8947, doi. 10.1093/nar/gkae621

By:

Vigoda, Meshi Barsheshet;
Argaman, Liron;
Kournos, Mark;
Margalit, Hanah

Publication type:

Article

Single-mode termination of phage transcriptions, disclosing bacterial adaptation for facilitated reinitiations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9092, doi. 10.1093/nar/gkae620

By:

Song, Eunho;
Han, Sun;
Uhm, Heesoo;
Kang, Changwon;
Hohng, Sungchul

Publication type:

Article

MUT-7 exoribonuclease activity and localization are mediated by an ancient domain.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9076, doi. 10.1093/nar/gkae610

By:

Busetto, Virginia;
Pshanichnaya, Lizaveta;
Lichtenberger, Raffael;
Hann, Stephan;
Ketting, René F;
Falk, Sebastian

Publication type:

Article

SigAlign: an alignment algorithm guided by explicit similarity criteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8717, doi. 10.1093/nar/gkae607

By:

Bahk, Kunhyung;
Sung, Joohon

Publication type:

Article

Conformational dynamics of CasX (Cas12e) in mediating DNA cleavage revealed by single-molecule FRET.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9014, doi. 10.1093/nar/gkae604

By:

Xing, Wenjing;
Li, Danyuan;
Wang, Wenjuan;
Liu, Jun-Jie Gogo;
Chen, Chunlai

Publication type:

Article

Analysis of bacterial transcriptome and epitranscriptome using nanopore direct RNA sequencing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8746, doi. 10.1093/nar/gkae601

By:

Tan, Lu;
Guo, Zhihao;
Shao, Yanwen;
Ye, Lianwei;
Wang, Miaomiao;
Deng, Xin;
Chen, Sheng;
Li, Runsheng

Publication type:

Article

Monitoring nucleolar-nucleoplasmic protein shuttling in living cells by high-content microscopy and automated image analysis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. e72, doi. 10.1093/nar/gkae598

By:

Engbrecht, Marina;
Grundei, David;
Dilger, Asisa M;
Wiedemann, Hannah;
Aust, Ann-Kristin;
Baumgärtner, Sarah;
Helfrich, Stefan;
Kergl-Räpple, Felix;
Bürkle, Alexander;
Mangerich, Aswin

Publication type:

Article

Nanoscale dynamics and localization of single endogenous mRNAs in stress granules.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8675, doi. 10.1093/nar/gkae588

By:

Sugawara, Ko;
Uno, Shin-nosuke;
Kamiya, Mako;
Sakamoto, Akihiko;
Urano, Yasuteru;
Funatsu, Takashi;
Okabe, Kohki

Publication type:

Article

End resection and telomere healing of DNA double-strand breaks during nematode programmed DNA elimination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8913, doi. 10.1093/nar/gkae579

By:

Estrem, Brandon;
Davis, Richard E;
Wang, Jianbin

Publication type:

Article

Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. e69, doi. 10.1093/nar/gkae566

By:

Mulero-Hernández, Juan;
Mironov, Vladimir;
Miñarro-Giménez, José Antonio;
Kuiper, Martin;
Fernández-Breis, Jesualdo Tomás

Publication type:

Article

Staphylococcal exoribonuclease YhaM destabilizes ribosomes by targeting the mRNA of a hibernation factor.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8998, doi. 10.1093/nar/gkae596

By:

Lipońska, Anna;
Lee, Hyun;
Yap, Mee-Ngan F

Publication type:

Article

Multiplexed in situ protein imaging using DNA-barcoded antibodies with extended hybridization chain reactions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. e71, doi. 10.1093/nar/gkae592

By:

Wang, Yu;
Liu, Xiaoyu;
Zeng, Yitian;
Saka, Sinem K;
Xie, Wenxin;
Goldaracena, Isabel;
Kohman, Richie E;
Yin, Peng;
Church, George M

Publication type:

Article

Weak-cooperative binding of a long single-stranded DNA chain on a surface.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8661, doi. 10.1093/nar/gkae576

By:

Nava, Giovanni;
Carzaniga, Thomas;
Casiraghi, Luca;
Bot, Erik;
Zanchetta, Giuliano;
Damin, Francesco;
Chiari, Marcella;
Weber, Gerald;
Bellini, Tommaso;
Mollica, Luca;
Buscaglia, Marco

Publication type:

Article

Re-engineered guide RNA enables DNA loops and contacts modulating repression in E. coli.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9328, doi. 10.1093/nar/gkae591

By:

Yang, Yunshi;
Rocamonde-Lago, Iris;
Shen, Boxuan;
Berzina, Ieva;
Zipf, Johanna;
Högberg, Björn

Publication type:

Article

Imaging and quantification of human and viral circular RNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. e70, doi. 10.1093/nar/gkae583

By:

Jaijyan, Dabbu Kumar;
Yang, Shaomin;
Ramasamy, Santhamani;
Gu, Alison;
Zeng, Mulan;
Subbian, Selvakumar;
Tyagi, Sanjay;
Zhu, Hua

Publication type:

Article

The TOPOVIBL meiotic DSB formation protein: new insights from its biochemical and structural characterization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8930, doi. 10.1093/nar/gkae587

By:

Diagouraga, Boubou;
Tambones, Izabella;
Carivenc, Coralie;
Bechara, Chérine;
Nadal, Marc;
de Massy, Bernard;
le Maire, Albane;
Robert, Thomas

Publication type:

Article

Diversification of the Rho transcription termination factor in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8979, doi. 10.1093/nar/gkae582

By:

Moreira, Sofia M;
Chyou, Te-yuan;
Wade, Joseph T;
Brown, Chris M

Publication type:

Article

Characterization of a MHYT domain-coupled transcriptional regulator that responds to carbon monoxide.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8849, doi. 10.1093/nar/gkae575

By:

Durante-Rodríguez, Gonzalo;
de Francisco-Polanco, Sofía;
García, José Luis;
Díaz, Eduardo

Publication type:

Article

Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8833, doi. 10.1093/nar/gkae572

By:

Del Toro-De León, Gerardo;
van Boven, Joram;
Santos-González, Juan;
Jiao, Wen-Biao;
Peng, Haoran;
Schneeberger, Korbinian;
Köhler, Claudia

Publication type:

Article

Chromatin context-dependent effects of epigenetic drugs on CRISPR-Cas9 editing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8815, doi. 10.1093/nar/gkae570

By:

Schep, Ruben;
Trauernicht, Max;
Vergara, Xabier;
Friskes, Anoek;
Morris, Ben;
Gregoricchio, Sebastian;
Manzo, Stefano G;
Zwart, Wilbert;
Beijersbergen, Roderick L;
Medema, René H;
van Steensel, Bas

Publication type:

Article

Cytosine analogues as DNA methyltransferase substrates.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9267, doi. 10.1093/nar/gkae568

By:

Wojciechowski, Marek;
Czapinska, Honorata;
Krwawicz, Joanna;
Rafalski, Dominik;
Bochtler, Matthias

Publication type:

Article

Sequence diversity of apidaecin-like peptides arresting the terminating ribosome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8967, doi. 10.1093/nar/gkae567

By:

Huang, Weiping;
Baliga, Chetana;
Vázquez-Laslop, Nora;
Mankin, Alexander S

Publication type:

Article

Nuclear F-actin assembly on damaged chromatin is regulated by DYRK1A and Spir1 phosphorylation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8897, doi. 10.1093/nar/gkae574

By:

Li, Junshi;
Xiong, Nan;
West, Kirk L;
Leung, Manton;
Ching, Yick Pang;
Huang, Jun;
Yuan, Jian;
Yu, Cheng-Han;
Leung, Justin;
Huen, Michael

Publication type:

Article

Single-molecule characterization of SV40 replisome and novel factors: human FPC and Mcm10.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8880, doi. 10.1093/nar/gkae565

By:

Ouyang, Yujing;
Al-Amodi, Amani;
Tehseen, Muhammad;
Alhudhali, Lubna;
Shirbini, Afnan;
Takahashi, Masateru;
Raducanu, Vlad-Stefan;
Yi, Gang;
Danazumi, Ammar Usman;
De Biasio, Alfredo;
Hamdan, Samir M

Publication type:

Article

Concerted action of ataxin-2 and PABPC1-bound mRNA poly(A) tail in the formation of stress granules.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9193, doi. 10.1093/nar/gkae497

By:

Yamagishi, Ryota;
Inagaki, Hiroto;
Suzuki, Jun;
Hosoda, Nao;
Sugiyama, Haruka;
Tomita, Kazunori;
Hotta, Takashi;
Hoshino, Shin-ichi

Publication type:

Article

PCAF promotes R-loop resolution via histone acetylation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8643, doi. 10.1093/nar/gkae558

By:

Lee, Seo Yun;
Lee, Soo Hyeon;
Choi, Nak Hun;
Kim, Ja Young;
Kweon, Jun Hee;
Miller, Kyle M;
Kim, Jae Jin

Publication type:

Article

PRPF40A induces inclusion of exons in GC-rich regions important for human myeloid cell differentiation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8800, doi. 10.1093/nar/gkae557

By:

Tan, Cheryl Weiqi;
Sim, Donald Yuhui;
Zhen, Yashu;
Tian, Haobo;
Koh, Jace;
Roca, Xavier

Publication type:

Article

protoSpaceJAM: an open-source, customizable and web-accessible design platform for CRISPR/Cas insertional knock-in.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. e68, doi. 10.1093/nar/gkae553

By:

Peng, Duo;
Vangipuram, Madhuri;
Wong, Joan;
Leonetti, Manuel D

Publication type:

Article

Multiplexed sequential imaging in living cells with orthogonal fluorogenic RNA aptamer/dye pairs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. e67, doi. 10.1093/nar/gkae551

By:

Zheng, Ru;
Wu, Rigumula;
Liu, Yuanchang;
Sun, Zhining;
Xue, Zhaolin;
Bagheri, Yousef;
Khajouei, Sima;
Mi, Lan;
Tian, Qian;
Pho, Raymond;
Liu, Qinge;
Siddiqui, Sidrat;
Ren, Kewei;
You, Mingxu

Publication type:

Article

A RAD18–UBC13–PALB2–RNF168 axis mediates replication fork recovery in BRCA1-deficient cancer cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8861, doi. 10.1093/nar/gkae563

By:

Cybulla, Emily;
Wallace, Sierra;
Meroni, Alice;
Jackson, Jessica;
Agashe, Sumedha;
Tennakoon, Mithila;
Limbu, Mangsi;
Quinet, Annabel;
Lomonosova, Elena;
Noia, Hollie;
Tirman, Stephanie;
Wood, Matthew;
Lemacon, Delphine;
Fuh, Katherine;
Zou, Lee;
Vindigni, Alessandro

Publication type:

Article

Differential impact of quiescent non-coding loci on chromatin entropy.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8778, doi. 10.1093/nar/gkae535

By:

Wu, Peiyao;
Yao, Mina;
Wang, Wei

Publication type:

Article

Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 8763, doi. 10.1093/nar/gkae521

By:

Hurieva, Bohdana;
Kumar, Divya Krishna;
Morag, Rotem;
Lupo, Offir;
Carmi, Miri;
Barkai, Naama;
Jonas, Felix

Publication type:

Article

TRMT10A dysfunction perturbs codon translation of initiator methionine and glutamine and impairs brain functions in mice.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9230, doi. 10.1093/nar/gkae520

By:

Tresky, Roland;
Miyamoto, Yuta;
Nagayoshi, Yu;
Yabuki, Yasushi;
Araki, Kimi;
Takahashi, Yukie;
Komohara, Yoshihiro;
Ge, Huicong;
Nishiguchi, Kayo;
Fukuda, Takaichi;
Kaneko, Hitomi;
Maeda, Nobuko;
Matsuura, Jin;
Iwasaki, Shintaro;
Sakakida, Kourin;
Shioda, Norifumi;
Wei, Fan-Yan;
Tomizawa, Kazuhito;
Chujo, Takeshi

Publication type:

Article

MicroRNA biogenesis is broadly disrupted by inhibition of the splicing factor SF3B1.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9210, doi. 10.1093/nar/gkae505

By:

Downie Ruiz Velasco, Angela;
Parsons, Aimee L;
Heatley, Matthew C;
Martin, Athena R G;
Smart, Alfredo D;
Shah, Niraj;
Jopling, Catherine L

Publication type:

Article

Taxonomy of introns and the evolution of minor introns.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9247, doi. 10.1093/nar/gkae550

By:

Olthof, Anouk M;
Schwoerer, Charles F;
Girardini, Kaitlin N;
Weber, Audrey L;
Doggett, Karen;
Mieruszynski, Stephen;
Heath, Joan K;
Moore, Timothy E;
Biran, Jakob;
Kanadia, Rahul N

Publication type:

Article

Apollon: a deoxyribozyme that generates a yellow product.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9062, doi. 10.1093/nar/gkae490

By:

Volek, Martin;
Kurfürst, Jaroslav;
Kožíšek, Milan;
Srb, Pavel;
Veverka, Václav;
Curtis, Edward A

Publication type:

Article

Aurora: a fluorescent deoxyribozyme for high-throughput screening.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9049, doi. 10.1093/nar/gkae467

By:

Volek, Martin;
Kurfürst, Jaroslav;
Drexler, Matúš;
Svoboda, Michal;
Srb, Pavel;
Veverka, Václav;
Curtis, Edward A

Publication type:

Article

The fission yeast ortholog of Coilin, Mug174, forms Cajal body-like nuclear condensates and is essential for cellular quiescence.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9174, doi. 10.1093/nar/gkae463

By:

Deng, Xiaoling;
Yao, Qinglian;
Horvath, Attila;
Jiang, Ziling;
Zhao, Junjie;
Fischer, Tamás;
Sugiyama, Tomoyasu

Publication type:

Article

Cooperation of regulatory RNA and the RNA degradosome in transcript surveillance.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9161, doi. 10.1093/nar/gkae455

By:

Bandyra, Katarzyna J;
Fröhlich, Kathrin S;
Vogel, Jörg;
Rodnina, Marina;
Goyal, Akanksha;
Luisi, Ben F

Publication type:

Article

U6 snRNA m6A modification is required for accurate and efficient splicing of C. elegans and human pre-mRNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9139, doi. 10.1093/nar/gkae447

By:

Shen, Aykut;
Hencel, Katarzyna;
Parker, Matthew T;
Scott, Robyn;
Skukan, Roberta;
Adesina, Aduragbemi S;
Metheringham, Carey L;
Miska, Eric A;
Nam, Yunsun;
Haerty, Wilfried;
Simpson, Gordon G;
Akay, Alper

Publication type:

Article