Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 14

Results: 47

DNA-terminus-dependent transcription by T7 RNA polymerase and its C-helix mutants.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8443, doi. 10.1093/nar/gkae593

By:

Yu, Bingbing;
Chen, Yifan;
Yan, Yan;
Lu, Xueling;
Zhu, Bin

Publication type:

Article

Rapid functional activation of horizontally transferred eukaryotic intron-containing genes in the bacterial recipient.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8344, doi. 10.1093/nar/gkae628

By:

Yuan, Wen;
Yu, Jing;
Li, Zhichao

Publication type:

Article

EcCas6e-based antisense crRNA for gene repression and RNA editing in microorganisms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8628, doi. 10.1093/nar/gkae612

By:

Li, Mutong;
Cai, Zhaohui;
Song, Shucheng;
Yue, Xinmin;
Lu, Wenyu;
Rao, Shuquan;
Zhang, Chuanbo;
Xue, Chaoyou

Publication type:

Article

Ocr-mediated suppression of BrxX unveils a phage counter-defense mechanism.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8580, doi. 10.1093/nar/gkae608

By:

Li, Shen;
Xu, Tianhao;
Meng, Xinru;
Yan, Yujuan;
Zhou, Ying;
Duan, Lei;
Tang, Yulong;
Zhu, Li;
Sun, Litao

Publication type:

Article

Structural basis of water-mediated cis Watson–Crick/Hoogsteen base-pair formation in non-CpG methylation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8566, doi. 10.1093/nar/gkae594

By:

Lin, Shan-Meng;
Huang, Hsiang-Ti;
Fang, Pei-Ju;
Chang, Chi-Fon;
Satange, Roshan;
Chang, Chung-ke;
Chou, Shan-Ho;
Neidle, Stephen;
Hou, Ming-Hon

Publication type:

Article

Structure analysis of the telomere resolvase from the Lyme disease spirochete Borrelia garinii reveals functional divergence of its C-terminal domain.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8431, doi. 10.1093/nar/gkae580

By:

Semper, Cameron;
Watanabe, Nobuhiko;
Karimullina, Elina;
Patel, Deepak T;
Di Leo, Rosa;
Castellanos, Mildred;
Patel, Dhruvin H;
Chaconas, George;
Savchenko, Alexei

Publication type:

Article

CilioGenics: an integrated method and database for predicting novel ciliary genes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8127, doi. 10.1093/nar/gkae554

By:

Pir, Mustafa S;
Begar, Efe;
Yenisert, Ferhan;
Demirci, Hasan C;
Korkmaz, Mustafa E;
Karaman, Asli;
Tsiropoulou, Sofia;
Firat-Karalar, Elif Nur;
Blacque, Oliver E;
Oner, Sukru S;
Doluca, Osman;
Cevik, Sebiha;
Kaplan, Oktay I

Publication type:

Article

Dual genetic level modification engineering accelerate genome evolution of Corynebacterium glutamicum.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8609, doi. 10.1093/nar/gkae577

By:

Wang, Qing;
Zhang, Jie;
Zhao, Zhe;
Li, Yichen;
You, Jiajia;
Wang, Yi;
Li, Xiangfei;
Xu, Meijuan;
Rao, Zhiming

Publication type:

Article

Structural insight into the Csx1–Crn2 fusion self-limiting ribonuclease of type III CRISPR system.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8419, doi. 10.1093/nar/gkae569

By:

Zhang, Danping;
Du, Liyang;
Gao, Haishan;
Yuan, Cai;
Lin, Zhonghui

Publication type:

Article

Phosphorylation at the disordered N-end makes HuR accumulate and dimerize in the cytoplasm.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8552, doi. 10.1093/nar/gkae564

By:

Baños-Jaime, Blanca;
Corrales-Guerrero, Laura;
Pérez-Mejías, Gonzalo;
Rejano-Gordillo, Claudia M;
Velázquez-Campoy, Adrián;
Martínez-Cruz, Luis Alfonso;
Martínez-Chantar, María Luz;
De la Rosa, Miguel A;
Díaz-Moreno, Irene

Publication type:

Article

TMPyP binding evokes a complex, tunable nanomechanical response in DNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8399, doi. 10.1093/nar/gkae560

By:

Kretzer, Balázs;
Herényi, Levente;
Csík, Gabriella;
Supala, Eszter;
Orosz, Ádám;
Tordai, Hedvig;
Kiss, Bálint;
Kellermayer, Miklós

Publication type:

Article

Distinct mobility patterns of BRCA2 molecules at DNA damage sites.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8332, doi. 10.1093/nar/gkae559

By:

Paul, Maarten W;
Aaron, Jesse;
Wait, Eric;
Van Genderen, Romano M;
Tyagi, Arti;
Kabbech, Hélène;
Smal, Ihor;
Chew, Teng-Leong;
Kanaar, Roland;
Wyman, Claire

Publication type:

Article

Evidence for widespread translation of 5′ untranslated regions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8112, doi. 10.1093/nar/gkae571

By:

Rodriguez, Jose Manuel;
Abascal, Federico;
Cerdán-Vélez, Daniel;
Gómez, Laura Martínez;
Vázquez, Jesús;
Tress, Michael L

Publication type:

Article

Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8100, doi. 10.1093/nar/gkae552

By:

Paton, Victor;
Ramirez Flores, Ricardo Omar;
Gabor, Attila;
Badia-i-Mompel, Pau;
Tanevski, Jovan;
Garrido-Rodriguez, Martin;
Saez-Rodriguez, Julio

Publication type:

Article

Logical regulation of endogenous gene expression using programmable, multi-input processing CRISPR guide RNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8595, doi. 10.1093/nar/gkae549

By:

Kang, Hansol;
Park, Dongwon;
Kim, Jongmin

Publication type:

Article

Functional analysis of protein interactions using coupled bi-fluorescence complementation/GFP nanobody techniques.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. e66, doi. 10.1093/nar/gkae548

By:

Miyake, Tetsuaki;
McDermott, John C

Publication type:

Article

CLEMENT: genomic decomposition and reconstruction of non-tumor subclones.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. e62, doi. 10.1093/nar/gkae527

By:

Chung, Young-soo;
Kang, Seungseok;
Kim, Jisu;
Lee, Sangbo;
Kim, Sangwoo

Publication type:

Article

Aptamer binding footprints discriminate α-synuclein fibrillar polymorphs from different synucleinopathies.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8072, doi. 10.1093/nar/gkae544

By:

Bouvier-Müller, Alix;
Fourmy, Deborah;
Fenyi, Alexis;
Bousset, Luc;
Melki, Ronald;
Ducongé, Frédéric

Publication type:

Article

DNA binding and bridging by human CtIP in the healthy and diseased states.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8303, doi. 10.1093/nar/gkae538

By:

Lokanathan Balaji, Shreya;
De Bragança, Sara;
Balaguer-Pérez, Francisco;
Northall, Sarah;
Wilkinson, Oliver John;
Aicart-Ramos, Clara;
Seetaloo, Neeleema;
Sobott, Frank;
Moreno-Herrero, Fernando;
Dillingham, Mark Simon

Publication type:

Article

PBOX-sRNA-seq uncovers novel features of miRNA modification and identifies selected 5′-tRNA fragments bearing 2′-O-modification.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. e65, doi. 10.1093/nar/gkae537

By:

Chen, Susu;
Cai, Yuchen;
Yang, Huiru;
Zhang, Bin;
Li, Ning;
Ren, Guodong

Publication type:

Article

Directed evolution of hyperactive integrases for site specific insertion of transgenes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. e64, doi. 10.1093/nar/gkae534

By:

Hew, Brian E;
Gupta, Sabranth;
Sato, Ryuei;
Waller, David F;
Stoytchev, Ilko;
Short, James E;
Sharek, Lisa;
Tran, Christopher T;
Badran, Ahmed H;
Owens, Jesse B

Publication type:

Article

MRNIP limits ssDNA gaps during replication stress.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8320, doi. 10.1093/nar/gkae546

By:

Bennett, Laura G;
Vernon, Ellen G;
Thanendran, Vithursha;
Jones, Caryl M;
Gamble, Amelia;
Staples, Christopher J

Publication type:

Article

DNA-controlled protein fluorescence: Design of aptamer-split peptide hetero-modulator for GFP to respond to intracellular ATP levels.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8063, doi. 10.1093/nar/gkae532

By:

Park, Ki Sung;
Cha, Hanvit;
Niu, Jia;
Soh, Hyongsok Tom;
Lee, Jin Hyup;
Pack, Seung Pil

Publication type:

Article

iMab antibody binds single-stranded cytosine-rich sequences and unfolds DNA i-motifs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8052, doi. 10.1093/nar/gkae531

By:

Boissieras, Joseph;
Bonnet, Hugues;
Susanto, Maria Fidelia;
Gomez, Dennis;
Defrancq, Eric;
Granzhan, Anton;
Dejeu, Jérôme

Publication type:

Article

Machine learning enables pan-cancer identification of mutational hotspots at persistent CTCF binding sites.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8086, doi. 10.1093/nar/gkae530

By:

Chen, Wenhan;
Zeng, Yi C;
Achinger-Kawecka, Joanna;
Campbell, Elyssa;
Jones, Alicia K;
Stewart, Alastair G;
Khoury, Amanda;
Clark, Susan J

Publication type:

Article

Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. e63, doi. 10.1093/nar/gkae528

By:

Espinoza, Josh L;
Phillips, Allan;
Prentice, Melanie B;
Tan, Gene S;
Kamath, Pauline L;
Lloyd, Karen G;
Dupont, Chris L

Publication type:

Article

Phase-separated ParB enforces diverse DNA compaction modes and stabilizes the parS-centered partition complex.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8385, doi. 10.1093/nar/gkae533

By:

Zhao, Yilin;
Guo, Lijuan;
Hu, Jiaojiao;
Ren, Zhiyun;
Li, Yanan;
Hu, Meng;
Zhang, Xia;
Bi, Lulu;
Li, Dan;
Ma, Hanhui;
Liu, Cong;
Sun, Bo

Publication type:

Article

SUMO protease and proteasome recruitment at the nuclear periphery differently affect replication dynamics at arrested forks.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8286, doi. 10.1093/nar/gkae526

By:

Schirmeisen, Kamila;
Naiman, Karel;
Fréon, Karine;
Besse, Laetitia;
Chakraborty, Shrena;
Saada, Anissia Ait;
Carr, Antony M;
Kramarz, Karol;
Lambert, Sarah A E

Publication type:

Article

Distinct DNA repair mechanisms prevent formaldehyde toxicity during development, reproduction and aging.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8271, doi. 10.1093/nar/gkae519

By:

Rieckher, Matthias;
Gallrein, Christian;
Alquezar-Artieda, Natividad;
Bourached-Silva, Nour;
Vaddavalli, Pavana Lakshmi;
Mares, Devin;
Backhaus, Maria;
Blindauer, Timon;
Greger, Ksenia;
Wiesner, Eva;
Pontel, Lucas B;
Schumacher, Björn

Publication type:

Article

ASH1L guards cis-regulatory elements against cyclobutane pyrimidine dimer induction.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8254, doi. 10.1093/nar/gkae517

By:

Yancoskie, Michelle N;
Khaleghi, Reihaneh;
Gururajan, Anirvinya;
Raghunathan, Aadarsh;
Gupta, Aryan;
Diethelm, Sarah;
Maritz, Corina;
Sturla, Shana J;
Krishnan, Marimuthu;
Naegeli, Hanspeter

Publication type:

Article

A new anti-CRISPR gene promotes the spread of drug-resistance plasmids in Klebsiella pneumoniae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8370, doi. 10.1093/nar/gkae516

By:

Jiang, Chunyu;
Yu, Chengzhi;
Sun, Shuyi;
Lin, Jiajia;
Cai, Mufeng;
Wei, Zhenquan;
Feng, Lingling;
Li, Jianhui;
Zhang, Yan;
Dong, Ke;
Guo, Xiaokui;
Qin, Jinhong;
Zhang, Yu

Publication type:

Article

Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. e61, doi. 10.1093/nar/gkae515

By:

Wang, Shuai;
Jiang, Yiqi;
Che, Lijia;
Wang, Ruo Han;
Li, Shuai Cheng

Publication type:

Article

Staphylococcal aconitase expression during iron deficiency is controlled by an sRNA-driven feedforward loop and moonlighting activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8241, doi. 10.1093/nar/gkae506

By:

Barrault, Maxime;
Chabelskaya, Svetlana;
Coronel-Tellez, Rodrigo H;
Toffano-Nioche, Claire;
Jacquet, Eric;
Bouloc, Philippe

Publication type:

Article

HDAC4 influences the DNA damage response and counteracts senescence by assembling with HDAC1/HDAC2 to control H2BK120 acetylation and homology-directed repair.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8218, doi. 10.1093/nar/gkae501

By:

Di Giorgio, Eros;
Dalla, Emiliano;
Tolotto, Vanessa;
D'Este, Francesca;
Paluvai, Harikrishnareddy;
Ranzino, Liliana;
Brancolini, Claudio

Publication type:

Article

Efficient activation of hundreds of LTR12C elements reveals cis-regulatory function determined by distinct epigenetic mechanisms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8205, doi. 10.1093/nar/gkae498

By:

Ohtani, Hitoshi;
Liu, Minmin;
Liang, Gangning;
Jang, H Josh;
Jones, Peter A

Publication type:

Article

Symmetry breaking of fluorophore binding to a G-quadruplex generates an RNA aptamer with picomolar K<sub>D</sub>.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8039, doi. 10.1093/nar/gkae493

By:

Lu, Xiaocen;
Passalacqua, Luiz F M;
Nodwell, Matthew;
Kong, Kristen Y S;
Caballero-García, Guillermo;
Dolgosheina, Elena V;
Ferré-D'Amaré, Adrian R;
Britton, Robert;
Unrau, Peter J

Publication type:

Article

Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8193, doi. 10.1093/nar/gkae485

By:

Hu, Yimin;
Schwab, Samuel;
Deiss, Silvia;
Escudeiro, Pedro;
van Heesch, Thor;
Joiner, Joe D;
Vreede, Jocelyne;
Hartmann, Marcus D;
Lupas, Andrei N;
Alvarez, Birte Hernandez;
Alva, Vikram;
Dame, Remus T

Publication type:

Article

Loops are geometric catalysts for DNA integration.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8184, doi. 10.1093/nar/gkae484

By:

Battaglia, Cleis;
Michieletto, Davide

Publication type:

Article

Increased transcriptional elongation and RNA stability of GPCR ligand binding genes unveiled via RNA polymerase II degradation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8165, doi. 10.1093/nar/gkae478

By:

Bao, Lijun;
Zhu, Junyi;
Shi, Tingxin;
Jiang, Yongpeng;
Li, Boyuan;
Huang, Jie;
Ji, Xiong

Publication type:

Article

The relationship between nanoscale genome organization and gene expression in mouse embryonic stem cells during pluripotency transition.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8146, doi. 10.1093/nar/gkae476

By:

Garate, Ximena;
Gómez-García, Pablo Aurelio;
Merino, Manuel Fernández;
Angles, Marta Cadevall;
Zhu, Chenggan;
Castells-García, Alvaro;
Ed-daoui, Ilyas;
Martin, Laura;
Ochiai, Hiroshi;
Neguembor, Maria Victoria;
Cosma, Maria Pia

Publication type:

Article

Principles of miRNA/miRNA* function in plant MIRNA processing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8356, doi. 10.1093/nar/gkae458

By:

Rosatti, Santiago;
Rojas, Arantxa M L;
Moro, Belén;
Suarez, Irina P;
Bologna, Nicolas G;
Chorostecki, Uciel;
Palatnik, Javier F

Publication type:

Article

Parsing the roles of DExD-box proteins DDX39A and DDX39B in alternative RNA splicing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8534, doi. 10.1093/nar/gkae431

By:

Banerjee, Shefali;
Nagasawa, Chloe K;
Widen, Steven G;
Garcia-Blanco, Mariano A

Publication type:

Article

A high-resolution map of functional miR-181 response elements in the thymus reveals the role of coding sequence targeting and an alternative seed match.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8515, doi. 10.1093/nar/gkae416

By:

Verheyden, Nikita A;
Klostermann, Melina;
Brüggemann, Mirko;
Steede, Hanna M;
Scholz, Anica;
Amr, Shady;
Lichtenthaeler, Chiara;
Münch, Christian;
Schmid, Tobias;
Zarnack, Kathi;
Krueger, Andreas

Publication type:

Article

Recruitment of multi-segment genomic RNAs by Bluetongue virus requires a preformed RNA network.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8500, doi. 10.1093/nar/gkae404

By:

Sung, Po-yu;
Phelan, Jody E;
Luo, Dongsheng;
Kulasegaran-Shylini, Raghavendran;
Bohn, Patrick;
Smyth, Redmond P;
Roy, Polly

Publication type:

Article

A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8483, doi. 10.1093/nar/gkae399

By:

Takada, Hiraku;
Paternoga, Helge;
Fujiwara, Keigo;
Nakamoto, Jose A;
Park, Esther N;
Dimitrova-Paternoga, Lyudmila;
Beckert, Bertrand;
Saarma, Merilin;
Tenson, Tanel;
Buskirk, Allen R;
Atkinson, Gemma C;
Chiba, Shinobu;
Wilson, Daniel N;
Hauryliuk, Vasili

Publication type:

Article

Arabidopsis AGO1 N-terminal extension acts as an essential hub for PRMT5 interaction and post-translational modifications.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8466, doi. 10.1093/nar/gkae387

By:

Martín-Merchán, Andrea;
Lavatelli, Antonela;
Engler, Camila;
González-Miguel, Víctor M;
Moro, Belén;
Rosano, Germán L;
Bologna, Nicolas G

Publication type:

Article

Structure-based characterization and compound identification of the wild-type THF class-II riboswitch.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 14, p. 8454, doi. 10.1093/nar/gkae377

By:

Li, Chunyan;
Xu, Xiaochen;
Geng, Zhi;
Zheng, Luqian;
Song, Qianqian;
Shen, Xin;
Wu, Jingjing;
zhao, Jin;
Li, Hongcheng;
He, Mengqi;
Tai, Xiaoqing;
Zhang, Long;
Ma, Jinbiao;
Dong, Yuhui;
Ren, Aiming

Publication type:

Article