Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 13

Results: 51

ONECUT2 acts as a lineage plasticity driver in adenocarcinoma as well as neuroendocrine variants of prostate cancer.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7740, doi. 10.1093/nar/gkae547

By:

Qian, Chen;
Yang, Qian;
Rotinen, Mirja;
Huang, Rongrong;
Kim, Hyoyoung;
Gallent, Brad;
Yan, Yiwu;
Cadaneanu, Radu M;
Zhang, Baohui;
Kaochar, Salma;
Freedland, Stephen J;
Posadas, Edwin M;
Ellis, Leigh;
Di Vizio, Dolores;
Morrissey, Colm;
Nelson, Peter S;
Brady, Lauren;
Murali, Ramachandran;
Campbell, Moray J;
Yang, Wei

Publication type:

Article

Correction to 'KDM6A–SND1 interaction maintains genomic stability by protecting the nascent DNA and contributes to cancer chemoresistance'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8038, doi. 10.1093/nar/gkae581
Publication type:: Article

Correction to 'Cooperative Gsx2–DNA binding requires DNA bending and a novel Gsx2 homeodomain interface'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8037, doi. 10.1093/nar/gkae578
Publication type:: Article

Correction to 'Structure of an internal loop motif with three consecutive U·U mismatches from stem–loop 1 in the 3′-UTR of the SARS-CoV-2 genomic RNA'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8036, doi. 10.1093/nar/gkae545
Publication type:: Article

A comprehensive analysis of 3′UTRs in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7523, doi. 10.1093/nar/gkae543

By:

Murari, Emma;
Meadows, Dalton;
Cuda, Nicholas;
Mangone, Marco

Publication type:

Article

Correction to 'Overexpression of eIF5 or its protein mimic 5MP perturbs eIF2 function and induces ATF4 translation through delayed re-initiation'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8035, doi. 10.1093/nar/gkae542
Publication type:: Article

High-density resolution of the Kaposi's sarcoma associated herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7720, doi. 10.1093/nar/gkae540

By:

Shekhar, Ritu;
O'Grady, Tina;
Keil, Netanya;
Feswick, April;
Amador, David A Moraga;
Tibbetts, Scott A;
Flemington, Erik K;
Renne, Rolf

Publication type:

Article

Coordinated DNA polymerization by Polγ and the region of LonP1 regulated proteolysis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7863, doi. 10.1093/nar/gkae539

By:

Riccio, Amanda A;
Brannon, Asia J;
Krahn, Juno M;
Bouvette, Jonathan;
Williams, Jason G;
Borgnia, Mario J;
Copeland, William C

Publication type:

Article

Refining the pool of RNA-binding domains advances the classification and prediction of RNA-binding proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7504, doi. 10.1093/nar/gkae536

By:

Wassmer, Elsa;
Koppány, Gergely;
Hermes, Malte;
Diederichs, Sven;
Caudron-Herger, Maïwen

Publication type:

Article

Promoter dependent RNA polymerase II bypass of the epimerizable DNA lesion, Fapy•dG and 8-Oxo-2′-deoxyguanosine.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7437, doi. 10.1093/nar/gkae529

By:

Gao, Shijun;
Tahara, Yuki;
Kool, Eric T;
Greenberg, Marc M

Publication type:

Article

Correction to 'hnRNPA1 couples nuclear export and translation of specific mRNAs downstream of FGF-2/S6K2 signalling'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8034, doi. 10.1093/nar/gkae525
Publication type:: Article

Correction to 'N<sup>2</sup>-methylguanosine modifications on human tRNAs and snRNA U6 are important for cell proliferation, protein translation and pre-mRNA splicing'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8033, doi. 10.1093/nar/gkae524
Publication type:: Article

A treasure trove of 1034 actinomycete genomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7487, doi. 10.1093/nar/gkae523

By:

Jørgensen, Tue Sparholt;
Mohite, Omkar S;
Sterndorff, Eva B;
Alvarez-Arevalo, Maria;
Blin, Kai;
Booth, Thomas J;
Charusanti, Pep;
Faurdal, David;
Hansen, Troels Ø;
Nuhamunada, Matin;
Mourched, Anna-Sophie;
Palsson, Bernhard Ø;
Weber, Tilmann

Publication type:

Article

Cooperative Gsx2–DNA binding requires DNA bending and a novel Gsx2 homeodomain interface.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7987, doi. 10.1093/nar/gkae522

By:

Webb, Jordan A;
Farrow, Edward;
Cain, Brittany;
Yuan, Zhenyu;
Yarawsky, Alexander E;
Schoch, Emma;
Gagliani, Ellen K;
Herr, Andrew B;
Gebelein, Brian;
Kovall, Rhett A

Publication type:

Article

Nanopores map the acid-base properties of a single site in a single DNA molecule.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7429, doi. 10.1093/nar/gkae518

By:

Smith, Drew C;
Thomas, Christopher A;
Craig, Jonathan M;
Brinkerhoff, Henry;
Abell, Sarah J;
Franzi, Michaela C;
Carrasco, Jessica D;
Hoshika, Shuichi;
Benner, Steven A;
Gundlach, Jens H;
Laszlo, Andrew H

Publication type:

Article

Reinventing gene expression connectivity through regulatory and spatial structural empowerment via principal node aggregation graph neural network.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. e60, doi. 10.1093/nar/gkae514

By:

Yan, Fengyao;
Jiang, Limin;
Chen, Danqian;
Ceccarelli, Michele;
Guo, Yan

Publication type:

Article

Correction to 'YASS: enhancing the sensitivity of DNA similarity search'.

Published in:: Nucleic Acids Research, 2024, v. 52, n. 13, p. 8032, doi. 10.1093/nar/gkae513
Publication type:: Article

A Plasmodium apicoplast-targeted unique exonuclease/FEN exhibits interspecies functional differences attributable to an insertion that alters DNA-binding.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7843, doi. 10.1093/nar/gkae512

By:

Chatterjee, Tribeni;
Tiwari, Anupama;
Gupta, Ritika;
Shukla, Himadri;
Varshney, Aastha;
Mishra, Satish;
Habib, Saman

Publication type:

Article

Intrinsically disordered regions regulate RhlE RNA helicase functions in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7809, doi. 10.1093/nar/gkae511

By:

Hausmann, Stéphane;
Geiser, Johan;
Allen, George Edward;
Geslain, Sandra Amandine Marie;
Valentini, Martina

Publication type:

Article

The impact of mRNA poly(A) tail length on eukaryotic translation stages.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7792, doi. 10.1093/nar/gkae510

By:

Biziaev, Nikita;
Shuvalov, Alexey;
Salman, Ali;
Egorova, Tatiana;
Shuvalova, Ekaterina;
Alkalaeva, Elena

Publication type:

Article

Binding of the TRF2 iDDR motif to RAD50 highlights a convergent evolutionary strategy to inactivate MRN at telomeres.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7704, doi. 10.1093/nar/gkae509

By:

Khayat, Freddy;
Alshmery, Majedh;
Pal, Mohinder;
Oliver, Antony W;
Bianchi, Alessandro

Publication type:

Article

Formation of left-handed helices by C2′-fluorinated nucleic acids under physiological salt conditions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7414, doi. 10.1093/nar/gkae508

By:

El-Khoury, Roberto;
Cabrero, Cristina;
Movilla, Santiago;
Kaur, Harneesh;
Friedland, David;
Domínguez, Arnau;
Thorpe, James D;
Roman, Morgane;
Orozco, Modesto;
González, Carlos;
Damha, Masad J

Publication type:

Article

Editorial: Gary Felsenfeld (1929–2024).

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7399, doi. 10.1093/nar/gkae503

By:

Pederson, Thoru

Publication type:

Article

YY1 is involved in homologous recombination inhibition at guanine quadruplex sites in human cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7401, doi. 10.1093/nar/gkae502

By:

Cui, Xinyu;
Zhang, Chengwen;
Fu, Chunqing;
Hu, Jinglei;
Li, Tengjiao;
Li, Lin

Publication type:

Article

Motif-VI loop acts as a nucleotide valve in the West Nile Virus NS3 Helicase.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7447, doi. 10.1093/nar/gkae500

By:

Roy, Priti;
Walter, Zachary;
Berish, Lauren;
Ramage, Holly;
McCullagh, Martin

Publication type:

Article

RAD18 directs DNA double-strand break repair by homologous recombination to post-replicative chromatin.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7687, doi. 10.1093/nar/gkae499

By:

Palek, Matous;
Palkova, Natalie;
CZECANCA, consortium;
Kleiblova, Petra;
Kleibl, Zdenek;
Macurek, Libor

Publication type:

Article

FRET-guided modeling of nucleic acids.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. e59, doi. 10.1093/nar/gkae496

By:

Steffen, Fabio D;
Cunha, Richard A;
Sigel, Roland K O;
Börner, Richard

Publication type:

Article

Transfer learning for cross-context prediction of protein expression from 5'UTR sequence.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. e58, doi. 10.1093/nar/gkae491

By:

Gilliot, Pierre-Aurélien;
Gorochowski, Thomas E

Publication type:

Article

Phage-host co-evolution has led to distinct generalized transduction strategies.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7780, doi. 10.1093/nar/gkae489

By:

Wolput, Sanne;
Lood, Cédric;
Fillol-Salom, Alfred;
Casters, Yorben;
Albasiony, Alaa;
Cenens, William;
Vanoirbeek, Kristof;
Kerremans, Alison;
Lavigne, Rob;
Penadés, José R;
Aertsen, Abram

Publication type:

Article

KDM6A–SND1 interaction maintains genomic stability by protecting the nascent DNA and contributes to cancer chemoresistance.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7665, doi. 10.1093/nar/gkae487

By:

Wu, Jian;
Jiang, Yixin;
Zhang, Qin;
Mao, Xiaobing;
Wu, Tong;
Hao, Mengqiu;
Zhang, Su;
Meng, Yang;
Wan, Xiaowen;
Qiu, Lei;
Han, Junhong

Publication type:

Article

Eukaryotic AlaX provides multiple checkpoints for quality and quantity of aminoacyl-tRNAs in translation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7825, doi. 10.1093/nar/gkae486

By:

Li, Zi-Han;
Zhou, Xiao-Long

Publication type:

Article

Engineering spacer specificity of the Cre/loxP system.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 8017, doi. 10.1093/nar/gkae481

By:

Hoersten, Jenna;
Ruiz-Gómez, Gloria;
Paszkowski-Rogacz, Maciej;
Gilioli, Giorgio;
Guillem-Gloria, Pedro Manuel;
Lansing, Felix;
Pisabarro, M Teresa;
Buchholz, Frank

Publication type:

Article

CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. e57, doi. 10.1093/nar/gkae480

By:

Zhao, Yan;
Kohl, Clemens;
Rosebrock, Daniel;
Hu, Qinan;
Hu, Yuhui;
Vingron, Martin

Publication type:

Article

OptoLacI: optogenetically engineered lactose operon repressor LacI responsive to light instead of IPTG.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 8003, doi. 10.1093/nar/gkae479

By:

Liu, Meizi;
Li, Zuhui;
Huang, Jianfeng;
Yan, Junjun;
Zhao, Guoping;
Zhang, Yanfei

Publication type:

Article

The 5′-terminal stem–loop RNA element of SARS-CoV-2 features highly dynamic structural elements that are sensitive to differences in cellular pH.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7971, doi. 10.1093/nar/gkae477

By:

Toews, Sabrina;
Wacker, Anna;
Faison, Edgar M;
Duchardt-Ferner, Elke;
Richter, Christian;
Mathieu, Daniel;
Bottaro, Sandro;
Zhang, Qi;
Schwalbe, Harald

Publication type:

Article

Replication protein A dynamically re-organizes on primer/template junctions to permit DNA polymerase δ holoenzyme assembly and initiation of DNA synthesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7650, doi. 10.1093/nar/gkae475

By:

Norris, Jessica L;
Rogers, Lindsey O;
Pytko, Kara G;
Dannenberg, Rachel L;
Perreault, Samuel;
Kaushik, Vikas;
Kuppa, Sahiti;
Antony, Edwin;
Hedglin, Mark

Publication type:

Article

Crystal structure of a tetrameric RNA G-quadruplex formed by hexanucleotide repeat expansions of C9orf72 in ALS/FTD.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7961, doi. 10.1093/nar/gkae473

By:

Geng, Yanyan;
Liu, Changdong;
Xu, Naining;
Suen, Monica Ching;
Miao, Haitao;
Xie, Yuanyuan;
Zhang, Bingchang;
Chen, Xueqin;
Song, Yuanjian;
Wang, Zhanxiang;
Cai, Qixu;
Zhu, Guang

Publication type:

Article

iSuRe-HadCre is an essential tool for effective conditional genetics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. e56, doi. 10.1093/nar/gkae472

By:

Garcia-Gonzalez, Irene;
Rocha, Susana F;
Hamidi, Anahita;
Garcia-Ortega, Lourdes;
Regano, Alvaro;
Sanchez-Muñoz, Maria S;
Lytvyn, Mariya;
Garcia-Cabero, Aroa;
Roig-Soucase, Sergi;
Schoofs, Hans;
Castro, Marco;
Sabata, Helena;
Potente, Michael;
Graupera, Mariona;
Makinen, Taija;
Benedito, Rui

Publication type:

Article

YjgA plays dual roles in enhancing PTC maturation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7947, doi. 10.1093/nar/gkae469

By:

Du, Mengtan;
Deng, Chenke;
Yu, Ting;
Zhou, Qixin;
Zeng, Fuxing

Publication type:

Article

Induro-RT mediated circRNA-sequencing (IMCR-seq) enables comprehensive profiling of full-length and long circular RNAs from low input total RNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. e55, doi. 10.1093/nar/gkae465

By:

Unlu, Irem;
Maguire, Sean;
Guan, Shengxi;
Sun, Zhiyi

Publication type:

Article

Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7627, doi. 10.1093/nar/gkae449

By:

Jayakrishnan, Muhunden;
Havlová, Magdalena;
Veverka, Václav;
Regnard, Catherine;
Becker, Peter B

Publication type:

Article

Variable patterns of retrotransposition in different HeLa strains provide mechanistic insights into SINE RNA mobilization processes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7761, doi. 10.1093/nar/gkae448

By:

Moldovan, John B;
Kopera, Huira C;
Liu, Ying;
Garcia-Canadas, Marta;
Catalina, Purificacion;
Leone, Paola E;
Sanchez, Laura;
Kitzman, Jacob O;
Kidd, Jeffrey M;
Garcia-Perez, Jose Luis;
Moran, John V

Publication type:

Article

The developmental and evolutionary characteristics of transcription factor binding site clustered regions based on an explainable machine learning model.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7610, doi. 10.1093/nar/gkae441

By:

Ouyang, Zhangyi;
Liu, Feng;
Li, Wanying;
Wang, Junting;
Chen, Bijia;
Zheng, Yang;
Li, Yaru;
Tao, Huan;
Xu, Xiang;
Li, Cheng;
Cong, Yuwen;
Li, Hao;
Bo, Xiaochen;
Chen, Hebing

Publication type:

Article

Genome-wide analysis of mRNA decay in Arabidopsis shoot and root reveals the importance of co-translational mRNA decay in the general mRNA turnover.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7910, doi. 10.1093/nar/gkae363

By:

Carpentier, Marie-Christine;
Receveur, Anne-Elodie;
Boubegtitene, Alexandre;
Cadoudal, Adrien;
Bousquet-Antonelli, Cécile;
Merret, Rémy

Publication type:

Article

Repression of pervasive antisense transcription is the primary role of fission yeast RNA polymerase II CTD serine 2 phosphorylation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7572, doi. 10.1093/nar/gkae436

By:

Boulanger, Cédric;
Haidara, Nouhou;
Yague-Sanz, Carlo;
Larochelle, Marc;
Jacques, Pierre-Étienne;
Hermand, Damien;
Bachand, Francois

Publication type:

Article

Histone deacetylase Hos2 regulates protein expression noise by potentially modulating the protein translation machinery.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7556, doi. 10.1093/nar/gkae432

By:

Lin, Wei-Han;
Opoc, Florica J G;
Liao, Chia-Wei;
Roy, Kevin R;
Steinmetz, Lars M;
Leu, Jun-Yi

Publication type:

Article

Transposon DNA sequences facilitate the tissue-specific gene transfer of circulating tumor DNA between human cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7539, doi. 10.1093/nar/gkae427

By:

Cinar, Munevver;
Martinez-Medina, Lourdes;
Puvvula, Pavan K;
Arakelyan, Arsen;
Vardarajan, Badri N;
Anthony, Neil;
Nagaraju, Ganji P;
Park, Dongkyoo;
Feng, Lei;
Sheff, Faith;
Mosunjac, Marina;
Saxe, Debra;
Flygare, Steven;
Alese, Olatunji B;
Kaufman, Jonathan L;
Lonial, Sagar;
Sarmiento, Juan M;
Lossos, Izidore S;
Vertino, Paula M;
Lopez, Jose A

Publication type:

Article

Comprehensive translational profiling and STE AI uncover rapid control of protein biosynthesis during cell stress.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7925, doi. 10.1093/nar/gkae365

By:

Horvath, Attila;
Janapala, Yoshika;
Woodward, Katrina;
Mahmud, Shafi;
Cleynen, Alice;
Gardiner, Elizabeth E;
Hannan, Ross D;
Eyras, Eduardo;
Preiss, Thomas;
Shirokikh, Nikolay E

Publication type:

Article

IRF2BP2 counteracts the ATF7/JDP2 AP-1 heterodimer to prevent inflammatory overactivation in acute myeloid leukemia (AML) cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7590, doi. 10.1093/nar/gkae437

By:

Fischer, Sabrina;
Weber, Lisa Marie;
Stielow, Bastian;
Frech, Miriam;
Simon, Clara;
Geller, Merle;
Könnecke, Julie;
Finkernagel, Florian;
Forné, Ignasi;
Nist, Andrea;
Bauer, Uta-Maria;
Stiewe, Thorsten;
Neubauer, Andreas;
Liefke, Robert

Publication type:

Article

The uS10c-BPG2 module mediates ribosomal RNA processing in chloroplast nucleoids.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 13, p. 7893, doi. 10.1093/nar/gkae339

By:

Sun, Xueping;
Singla-Rastogi, Meenu;
Wang, Jingwen;
Zhao, Chuanzhi;
Wang, Xingjun;
Li, Pengcheng

Publication type:

Article