Works matching IS 03051048 AND DT 2024 AND VI 52 AND IP 12

Results: 46

Correction to 'MCPIP1 ribonuclease exhibits broad-spectrum antiviral effects through viral RNA binding and degradation'.

Published in:: 2024
Publication type:: Correction Notice

Adaptation of a eukaryote-like ProRS to a prokaryote-like tRNA<sup>Pro</sup>.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7158, doi. 10.1093/nar/gkae483

By:

Ivanesthi, Indira Rizqita;
Latifah, Emi;
Amrullah, Luqman Fikri;
Tseng, Yi-Kuan;
Chuang, Tsung-Hsien;
Pan, Hung-Chuan;
Yang, Chih-Shiang;
Liu, Shih-Yang;
Wang, Chien-Chia

Publication type:

Article

Correction to 'The BRCA2 R2645G variant increases DNA binding and induces hyper-recombination'.

Published in:: 2024
Publication type:: Correction Notice

The translocation activity of Rad54 reduces crossover outcomes during homologous recombination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7031, doi. 10.1093/nar/gkae474

By:

Sridalla, Krishay;
Woodhouse, Mitchell V;
Hu, Jingyi;
Scheer, Jessica;
Ferlez, Bryan;
Crickard, J Brooks

Publication type:

Article

Unlocking the potential of protein-derived peptides to target G-quadruplex DNA: from recognition to anticancer activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6748, doi. 10.1093/nar/gkae471

By:

Merlino, Francesco;
Marzano, Simona;
Zizza, Pasquale;
D'Aria, Federica;
Grasso, Nicola;
Carachino, Alice;
Iachettini, Sara;
Biroccio, Annamaria;
Fonzo, Silvia Di;
Grieco, Paolo;
Randazzo, Antonio;
Amato, Jussara;
Pagano, Bruno

Publication type:

Article

Modular CRISPR/Cas12a synergistic activation platform for detection and logic operations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7384, doi. 10.1093/nar/gkae470

By:

Hu, Minghao;
Cheng, Xianzhi;
Wu, Tongbo

Publication type:

Article

In silico design of DNA sequences for in vivo nucleosome positioning.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6802, doi. 10.1093/nar/gkae468

By:

Routhier, Etienne;
Joubert, Alexandra;
Westbrook, Alex;
Pierre, Edgard;
Lancrey, Astrid;
Cariou, Marie;
Boulé, Jean-Baptiste;
Mozziconacci, Julien

Publication type:

Article

Concurrent D-loop cleavage by Mus81 and Yen1 yields half-crossover precursors.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7012, doi. 10.1093/nar/gkae453

By:

Carreira, Raquel;
Lama-Diaz, Tomas;
Crugeiras, Maria;
Aguado, F Javier;
Sebesta, Marek;
Krejci, Lumir;
Blanco, Miguel G

Publication type:

Article

DMC1 and RAD51 bind FxxA and FxPP motifs of BRCA2 via two separate interfaces.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7337, doi. 10.1093/nar/gkae452

By:

Miron, Simona;
Legrand, Pierre;
Dupaigne, Pauline;
van Rossum-Fikkert, Sari E;
Ristic, Dejan;
Majeed, Atifa;
Kanaar, Roland;
Zinn-Justin, Sophie;
Zelensky, Alex N

Publication type:

Article

Bioinformatic analysis of type III CRISPR systems reveals key properties and new effector families.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7129, doi. 10.1093/nar/gkae462

By:

Hoikkala, Ville;
Graham, Shirley;
White, Malcolm F

Publication type:

Article

Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7354, doi. 10.1093/nar/gkae459

By:

Schumacher, Maria A;
Singh, Rajiv R;
Salinas, Raul

Publication type:

Article

PHF2 regulates genome topology and DNA replication in neural stem cells via cohesin.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7063, doi. 10.1093/nar/gkae457

By:

Feng, Jia;
Chuah, You Heng;
Liang, Yajing;
Cipta, Nadia Omega;
Zeng, Yingying;
Warrier, Tushar;
Elfar, Gamal Ahmed Rashed Elsayed;
Yoon, Jeehyun;
Grinchuk, Oleg V;
Tay, Emmy Xue Yun;
Lok, Ker-Zhing;
Zheng, Zong-Qing;
Khong, Zi Jian;
Chong, Zheng-Shan;
Teo, Jackie;
Sanford, Emma May;
Neo, Cheryl Jia Yi;
Chiu, Hsin Yao;
Leung, Jia Yu;
Wang, Loo Chien

Publication type:

Article

Biochemical properties of chromatin domains define genome compartmentalization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. e54, doi. 10.1093/nar/gkae454

By:

Lucini, Federica;
Petrini, Cristiano;
Salviato, Elisa;
Pal, Koustav;
Rosti, Valentina;
Gorini, Francesca;
Santarelli, Philina;
Quadri, Roberto;
Lembo, Giovanni;
Graziano, Giulia;
Di Patrizio Soldateschi, Emanuele;
Tagliaferri, Ilario;
Pinatel, Eva;
Sebestyén, Endre;
Rotta, Luca;
Gentile, Francesco;
Vaira, Valentina;
Lanzuolo, Chiara;
Ferrari, Francesco

Publication type:

Article

Site-specific regulation of RNA editing with ribose-modified nucleoside analogs in ADAR guide strands.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6733, doi. 10.1093/nar/gkae461

By:

Jauregui-Matos, Victorio;
Jacobs, Olivia;
Ouye, Randall;
Mozumder, Sukanya;
Salvador, Prince J;
Fink, Kyle D;
Beal, Peter A

Publication type:

Article

LowTempGAL: a highly responsive low temperature-inducible GAL system in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7367, doi. 10.1093/nar/gkae460

By:

Lu, Zeyu;
Shen, Qianyi;
Bandari, Naga Chandra;
Evans, Samuel;
McDonnell, Liam;
Liu, Lian;
Jin, Wanli;
Luna-Flores, Carlos Horacio;
Collier, Thomas;
Talbo, Gert;
McCubbin, Tim;
Esquirol, Lygie;
Myers, Chris;
Trau, Matt;
Dumsday, Geoff;
Speight, Robert;
Howard, Christopher B;
Vickers, Claudia E;
Peng, Bingyin

Publication type:

Article

Structural and functional investigation of the DHH/DHHA1 family proteins in Deinococcus radiodurans.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7142, doi. 10.1093/nar/gkae451

By:

Wang, Ying;
Hao, Wanshan;
Guo, Ziming;
Sun, Yiyang;
Wu, Yu;
Sun, Yukang;
Gao, Tianwen;
Luo, Yun;
Jin, Lizan;
Yang, Jieyu;
Cheng, Kaiying

Publication type:

Article

Insights into the molecular mechanism of ParABS system in chromosome partition by HpParA and HpParB.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7321, doi. 10.1093/nar/gkae450

By:

Chu, Chen-Hsi;
Wu, Che-Ting;
Lin, Min-Guan;
Yen, Cheng-Yi;
Wu, Yi-Zhan;
Hsiao, Chwan-Deng;
Sun, Yuh-Ju

Publication type:

Article

CGeNArate: a sequence-dependent coarse-grained model of DNA for accurate atomistic MD simulations of kb-long duplexes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6791, doi. 10.1093/nar/gkae444

By:

Farré-Gil, David;
Arcon, Juan Pablo;
Laughton, Charles A;
Orozco, Modesto

Publication type:

Article

mosaicMPI: a framework for modular data integration across cohorts and -omics modalities.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. e53, doi. 10.1093/nar/gkae442

By:

Verhey, Theodore B;
Seo, Heewon;
Gillmor, Aaron;
Thoppey-Manoharan, Varsha;
Schriemer, David;
Morrissy, Sorana

Publication type:

Article

The loss of DNA polymerase epsilon accessory subunits POLE3–POLE4 leads to BRCA1-independent PARP inhibitor sensitivity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6994, doi. 10.1093/nar/gkae439

By:

Mamar, Hasan;
Fajka-Boja, Roberta;
Mórocz, Mónika;
Jurado, Eva Pinto;
Zentout, Siham;
Mihuţ, Alexandra;
Kopasz, Anna Georgina;
Mérey, Mihály;
Smith, Rebecca;
Sharma, Abhishek Bharadwaj;
Lakin, Nicholas D;
Bowman, Andrew James;
Haracska, Lajos;
Huet, Sébastien;
Timinszky, Gyula

Publication type:

Article

Dysregulated DnaB unwinding induces replisome decoupling and daughter strand gaps that are countered by RecA polymerization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6977, doi. 10.1093/nar/gkae435

By:

Behrmann, Megan S;
Perera, Himasha M;
Welikala, Malisha U;
Matthews, Jacquelynn E;
Butterworth, Lauren J;
Trakselis, Michael A

Publication type:

Article

Structural characterization of two prototypical repressors of SorC family reveals tetrameric assemblies on DNA and mechanism of function.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7305, doi. 10.1093/nar/gkae434

By:

Šoltysová, Markéta;
Škerlová, Jana;
Pachl, Petr;
Škubník, Karel;
Fábry, Milan;
Sieglová, Irena;
Farolfi, Martina;
Grishkovskaya, Irina;
Babiak, Michal;
Nováček, Jiří;
Krásný, Libor;
Řezáčová, Pavlína

Publication type:

Article

Pseudogenes in plasmid genomes reveal past transitions in plasmid mobility.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7049, doi. 10.1093/nar/gkae430

By:

Hanke, Dustin M;
Wang, Yiqing;
Dagan, Tal

Publication type:

Article

Generating, modeling and evaluating a large-scale set of CRISPR/Cas9 off-target sites with bulges.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6777, doi. 10.1093/nar/gkae428

By:

Yaish, Ofir;
Orenstein, Yaron

Publication type:

Article

The p21CIP1-CDK4-DREAM axis is a master regulator of genotoxic stress-induced cellular senescence.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6945, doi. 10.1093/nar/gkae426

By:

Schmidt, Ariane;
Allmann, Sebastian;
Schwarzenbach, Christian;
Snyder, Petra;
Chen, Jia-Xuan;
Nagel, Georg;
Schöneis, Anna;
Rasenberger, Birgit;
Beli, Petra;
Loewer, Alexander;
Hofmann, Thomas G;
Tomicic, Maja T;
Christmann, Markus

Publication type:

Article

The activity of CobB1 protein deacetylase contributes to nucleoid compaction in Streptomyces venezuelae spores by increasing HupS affinity for DNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7112, doi. 10.1093/nar/gkae418

By:

Duława-Kobeluszczyk, Julia;
Strzałka, Agnieszka;
Tracz, Michał;
Bartyńska, Magdalena;
Pawlikiewicz, Katarzyna;
Łebkowski, Tomasz;
Wróbel, Sara;
Szymczak, Justyna;
Zarek, Anna;
Małecki, Tomasz;
Jakimowicz, Dagmara;
Szafran, Marcin J

Publication type:

Article

Primordial aminoacyl-tRNA synthetases preferred minihelices to full-length tRNA.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7096, doi. 10.1093/nar/gkae417

By:

Tang, Guo Qing;
Hu, Hao;
Douglas, Jordan;
Carter, Charles W

Publication type:

Article

Maf1 phosphorylation is regulated through the action of prefoldin-like Bud27 on PP4 phosphatase in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7081, doi. 10.1093/nar/gkae414

By:

Gutiérrez-Santiago, Francisco;
Martínez-Fernández, Verónica;
Garrido-Godino, Ana Isabel;
Colino-Palomino, Cristina;
Clemente-Blanco, Andrés;
Conesa, Christine;
Acker, Joël;
Navarro, Francisco

Publication type:

Article

Liam tackles complex multimodal single-cell data integration challenges.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. e52, doi. 10.1093/nar/gkae409

By:

Rautenstrauch, Pia;
Ohler, Uwe

Publication type:

Article

Alternative translation initiation by ribosomal leaky scanning produces multiple isoforms of the Pif1 helicase.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6928, doi. 10.1093/nar/gkae400

By:

Lama-Diaz, Tomas;
Blanco, Miguel G

Publication type:

Article

NF-κB factors cooperate with Su(Hw)/E4F1 to balance Drosophila/human immune responses via modulating dynamic expression of miR-210.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6906, doi. 10.1093/nar/gkae394

By:

Zhou, Hongjian;
Huang, Yu;
Jia, Chaolong;
Pang, Yujia;
Liu, Li;
Xu, Yina;
Jin, Ping;
Qian, Jinjun;
Ma, Fei

Publication type:

Article

New Drosophila promoter-associated architectural protein Mzfp1 interacts with CP190 and is required for housekeeping gene expression and insulator activity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6886, doi. 10.1093/nar/gkae393

By:

Sokolov, Vladimir;
Kyrchanova, Olga;
Klimenko, Natalia;
Fedotova, Anna;
Ibragimov, Airat;
Maksimenko, Oksana;
Georgiev, Pavel

Publication type:

Article

Protein phosphatase PP1 regulation of RNA polymerase II transcription termination and allelic exclusion of VSG genes in trypanosomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6866, doi. 10.1093/nar/gkae392

By:

Kieft, Rudo;
Zhang, Yang;
Yan, Haidong;
Schmitz, Robert J;
Sabatini, Robert

Publication type:

Article

Dynamics of the Herpes simplex virus DNA polymerase holoenzyme during DNA synthesis and proof-reading revealed by Cryo-EM.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7292, doi. 10.1093/nar/gkae374

By:

Gustavsson, Emil;
Grünewald, Kay;
Elias, Per;
Hällberg, B Martin

Publication type:

Article

Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6850, doi. 10.1093/nar/gkae372

By:

Hsu, Emily;
Hutchison, Katherine;
Liu, Yao;
Nicolet, Charles M;
Schreiner, Shannon;
Zemke, Nathan R;
Farnham, Peggy J

Publication type:

Article

A-MYB substitutes for B-MYB in activating cell cycle genes and in stimulating proliferation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6830, doi. 10.1093/nar/gkae370

By:

Kohler, Robin;
Engeland, Kurt

Publication type:

Article

Skipping events impose repeated binding attempts: profound kinetic implications of protein–DNA conformational changes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6763, doi. 10.1093/nar/gkae333

By:

Rogoulenko, Elena;
Levy, Yaakov

Publication type:

Article

CARM1 hypermethylates the NuRD chromatin remodeling complex to promote cell cycle gene expression and breast cancer development.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6811, doi. 10.1093/nar/gkae329

By:

Chen, Xue;
Huang, Ming-feng;
Fan, Da-meng;
He, Yao-hui;
Zhang, Wen-juan;
Ding, Jian-cheng;
Peng, Bing-ling;
Pan, Xu;
Liu, Ya;
Du, Jun;
Li, Ying;
Liu, Zhi-ying;
Xie, Bing-lan;
Kuang, Zhi-jian;
Yi, Jia;
Liu, Wen

Publication type:

Article

Molecular mechanism for target RNA recognition and cleavage of Cas13h.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7279, doi. 10.1093/nar/gkae324

By:

Chen, Fugen;
Zhang, Chendi;
Xue, Jialin;
Wang, Feng;
Li, Zhuang

Publication type:

Article

Increased PTCHD4 expression via m<sup>6</sup>A modification of PTCHD4 mRNA promotes senescent cell survival.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7261, doi. 10.1093/nar/gkae322

By:

Rossi, Martina;
Banskota, Nirad;
Shin, Chang Hoon;
Anerillas, Carlos;
Tsitsipatis, Dimitrios;
Yang, Jen-Hao;
Munk, Rachel;
Martindale, Jennifer L;
Yang, Xiaoling;
Piao, Yulan;
Mazan-Mamczarz, Krystyna;
Fan, Jinshui;
Lehrmann, Elin;
Lam, Kwan-Wood Gabriel;
De, Supriyo;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

A nematode-specific ribonucleoprotein complex mediates interactions between the major nematode spliced leader snRNP and its target pre-mRNAs.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7245, doi. 10.1093/nar/gkae321

By:

Eijlers, Peter;
Al-Khafaji, Mohammed;
Soto-Martin, Eva;
Fasimoye, Rotimi;
Stead, David;
Wenzel, Marius;
Müller, Berndt;
Pettitt, Jonathan

Publication type:

Article

PRMT5-mediated arginine methylation of FXR1 is essential for RNA binding in cancer cells.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7225, doi. 10.1093/nar/gkae319

By:

Vijayakumar, Anitha;
Majumder, Mrinmoyee;
Yin, Shasha;
Brobbey, Charles;
Karam, Joseph;
Howley, Breege;
Howe, Philip H;
Berto, Stefano;
Madan, Lalima K;
Gan, Wenjian;
Palanisamy, Viswanathan

Publication type:

Article

Epigenetic control of adaptive or homeostatic splicing during interval-training activities.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7211, doi. 10.1093/nar/gkae311

By:

Liu, Ling;
Nguyen, Hai;
Das, Urmi;
Ogunsola, Samuel;
Yu, Jiankun;
Lei, Lei;
Kung, Matthew;
Pejhan, Shervin;
Rastegar, Mojgan;
Xie, Jiuyong

Publication type:

Article

The RBPome of influenza A virus NP-mRNA reveals a role for TDP-43 in viral replication.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7188, doi. 10.1093/nar/gkae291

By:

Dupont, Maud;
Krischuns, Tim;
Gianetto, Quentin Giai;
Paisant, Sylvain;
Bonazza, Stefano;
Brault, Jean-Baptiste;
Douché, Thibaut;
Arragain, Benoît;
Florez-Prada, Alberto;
Perez-Perri, Joel I;
Hentze, Matthias W;
Cusack, Stephen;
Matondo, Mariette;
Isel, Catherine;
Courtney, David G;
Naffakh, Nadia

Publication type:

Article

Massively parallel identification of sequence motifs triggering ribosome-associated mRNA quality control.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 7171, doi. 10.1093/nar/gkae285

By:

Chen, Katharine Y;
Park, Heungwon;
Subramaniam, Arvind Rasi

Publication type:

Article

The BRCA2 R2645G variant increases DNA binding and induces hyper-recombination.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 12, p. 6964, doi. 10.1093/nar/gkad1222

By:

Alvaro-Aranda, Lucia;
Petitalot, Ambre;
Djeghmoum, Yasmina;
Panigada, Davide;
Singh, Jenny Kaur;
Ehlén, Åsa;
Vugic, Domagoj;
Martin, Charlotte;
Miron, Simona;
Contreras-Perez, Aida;
Nhiri, Naima;
Boucherit, Virginie;
Lafitte, Philippe;
Dumoulin, Isaac;
Quiles, Francisco;
Rouleau, Etienne;
Jacquet, Eric;
Feliubadaló, Lidia;
del Valle, Jesús;
Sharan, Shyam K

Publication type:

Article