Works matching IS 03051048 AND DT 2024

Results: 1318

CRISPR knockout genome-wide screens identify the HELQ-RAD52 axis in regulating the repair of cisplatin-induced single-stranded DNA gaps.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13832, doi. 10.1093/nar/gkae998

By:

Pale, Lindsey M;
Khatib, Jude B;
Nusawardhana, Alexandra;
Straka, Joshua;
Nicolae, Claudia M;
Moldovan, George-Lucian

Publication type:

Article

Transfer RNA supplementation rescues HARS deficiency in a humanized yeast model of Charcot-Marie-Tooth disease.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14043, doi. 10.1093/nar/gkae996

By:

Wilhelm, Sarah D P;
Kakadia, Jenica H;
Beharry, Aruun;
Kenana, Rosan;
Hoffman, Kyle S;
O'Donoghue, Patrick;
Heinemann, Ilka U

Publication type:

Article

CRISPR-AsCas12f1 couples out-of-protospacer DNA unwinding with exonuclease activity in the sequential target cleavage.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14030, doi. 10.1093/nar/gkae989

By:

Song, Xiaoxuan;
Chen, Ziting;
Sun, Wenjun;
Yang, Hao;
Guo, Lijuan;
Zhao, Yilin;
Li, Yanan;
Ren, Zhiyun;
Shi, Jin;
Liu, Cong;
Ma, Peixiang;
Huang, Xingxu;
Ji, Quanjiang;
Sun, Bo

Publication type:

Article

The conformation of FOXM1 homodimers in vivo is crucial for regulating transcriptional activities.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13625, doi. 10.1093/nar/gkae988

By:

Hsu, Chia-Chan;
Yao, Xiang;
Chen, Shang-Yao;
Tsuo, Tsui-Chun;
Wang, I-Ching

Publication type:

Article

Single-molecule visualization of sequence-specific RNA binding by a designer PPR protein.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14154, doi. 10.1093/nar/gkae984

By:

Marzano, Nicholas;
Johnston, Brady;
Paudel, Bishnu P;
Schmidberger, Jason;
Jergic, Slobodan;
Böcking, Till;
Agostino, Mark;
Small, Ian;
van Oijen, Antoine M;
Bond, Charles S

Publication type:

Article

Overcoming nucleotide bias in the nonenzymatic copying of RNA templates.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13515, doi. 10.1093/nar/gkae982

By:

Duzdevich, Daniel;
Carr, Christopher E;
Colville, Ben W F;
Aitken, Harry R M;
Szostak, Jack W

Publication type:

Article

Chromatin and transcription in Nucleic Acids Research: the first 50 years.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13485, doi. 10.1093/nar/gkae1151

By:

Defossez, Pierre-Antoine

Publication type:

Article

Correction to 'Click display: a rapid and efficient in vitro protein display method for directed evolution'.

Published in:: 2024
Publication type:: Correction Notice

Correction to 'Regulation of the androgen receptor by SET9-mediated methylation'.

Published in:: 2024
Publication type:: Correction Notice

Adaptive immunity of type VI CRISPR-Cas systems associated with reverse transcriptase–Cas1 fusion proteins.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14229, doi. 10.1093/nar/gkae1154

By:

Molina-Sánchez, María Dolores;
Martínez-Abarca, Francisco;
Millán, Vicenta;
Mestre, Mario Rodríguez;
Stehantsev, Pavlo;
Stetsenko, Artem;
Guskov, Albert;
Toro, Nicolás

Publication type:

Article

Interrogation of the interplay between DNA N<sup>6</sup>-methyladenosine (6mA) and hypoxia-induced chromatin accessibility by a randomized empirical model (EnrichShuf).

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13605, doi. 10.1093/nar/gkae1152

By:

Lai, Joseph Chieh-Yu;
Hsu, Kai-Wen;
Wu, Kou-Juey

Publication type:

Article

Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14133, doi. 10.1093/nar/gkae908

By:

McKinley, Lauren N;
Meyer, McCauley O;
Sebastian, Aswathy;
Chang, Benjamin K;
Messina, Kyle J;
Albert, Istvan;
Bevilacqua, Philip C

Publication type:

Article

Optogenetic control of Corynebacterium glutamicum gene expression.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14260, doi. 10.1093/nar/gkae1149

By:

Deng, Chen;
Xin, Ruijie;
Li, Xingjian;
Zhang, Jie;
Fan, Liqiang;
Qiu, Yongjun;
Zhao, Liming

Publication type:

Article

L1-ORF1p nucleoprotein can rapidly assume distinct conformations and simultaneously bind more than one nucleic acid.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14013, doi. 10.1093/nar/gkae1141

By:

Cashen, Ben A;
Naufer, M Nabuan;
Morse, Michael;
McCauley, Micah J;
Rouzina, Ioulia;
Jones, Charles E;
Furano, Anthony V;
Williams, Mark C

Publication type:

Article

Simultaneous determination of cytosolic aminoacyl-tRNA synthetase activities by LC–MS/MS.

Published in:

Nucleic Acids Research, 2024, n. 22, p. e107, doi. 10.1093/nar/gkae1134

By:

Mendes, Marisa I;
Wolf, Nicole I;
Rudinger-Thirion, Joëlle;
Lenz, Dominic;
Frugier, Magali;
Verloo, Patrick;
Mandel, Hanna;
Manor, Joshua;
Kassel, Rachel;
Corpeleijn, Willemijn E;
van der Rijt, Sanne;
Schroor, Elsbeth M;
van Dooren, Silvy J M;
Staufner, Christian;
Salomons, Gajja S;
Smith, Desirée E C

Publication type:

Article

Bacterial WYL domain transcriptional repressors sense single-stranded DNA to control gene expression.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13723, doi. 10.1093/nar/gkae1101

By:

Blankenchip, Chelsea L;
Corbett, Kevin D

Publication type:

Article

Synthetic translational coupling element for multiplexed signal processing and cellular control.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13469, doi. 10.1093/nar/gkae980

By:

Goh, Hyunseop;
Choi, Seungdo;
Kim, Jongmin

Publication type:

Article

Correction to 'Genome manipulation by guide-directed Argonaute cleavage'.

Published in:: 2024
Publication type:: Correction Notice

Protein moonlighting by a target gene dominates phenotypic divergence of the Sef1 transcriptional regulatory network in yeasts.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13914, doi. 10.1093/nar/gkae1147

By:

Hsu, Po-Chen;
Lu, Tzu-Chiao;
Hung, Po-Hsiang;
Leu, Jun-Yi

Publication type:

Article

DNA sequence and lesion-dependent mitochondrial transcription factor A (TFAM)-DNA-binding modulates DNA repair activities and products.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14093, doi. 10.1093/nar/gkae1144

By:

Urrutia, Kathleen;
Chen, Yu Hsuan;
Tang, Jin;
Hung, Ta I;
Zhang, Guodong;
Xu, Wenyan;
Zhao, Wenxin;
Tonthat, Dylan;
Chang, Chia-En A;
Zhao, Linlin

Publication type:

Article

Crosstalk between paralogs and isoforms influences p63-dependent regulatory element activity.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13812, doi. 10.1093/nar/gkae1143

By:

Baniulyte, Gabriele;
McCann, Abby A;
Woodstock, Dana L;
Sammons, Morgan A

Publication type:

Article

Spatial pattern and differential expression analysis with spatial transcriptomic data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. e101, doi. 10.1093/nar/gkae962

By:

Qin, Fei;
Luo, Xizhi;
Lu, Qing;
Cai, Bo;
Xiao, Feifei;
Cai, Guoshuai

Publication type:

Article

A bacterial transcription activator dedicated to the expression of the enzyme catalyzing the first committed step in fatty acid biosynthesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 12930, doi. 10.1093/nar/gkae960

By:

Xu, Yuanyou;
Lin, Zihan;
Hou, Jiyuan;
Ye, Kai;
Han, Sirui;
Liang, Yuxuan;
Liang, Huihui;
Wu, Shihua;
Tao, Yizhi J;
Gao, Haichun

Publication type:

Article

[SNG2], a prion form of Cut4/Apc1, confers non-Mendelian inheritance of heterochromatin silencing defect in fission yeast.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13792, doi. 10.1093/nar/gkae1136

By:

Sharma, Suman;
Srivastava, Suchita;
Dubey, Rudra Narayan;
Mishra, Poonam;
Singh, Jagmohan

Publication type:

Article

Molecular basis of the phosphorothioation-sensing antiphage defense system IscS–DndBCDE–DndI.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13594, doi. 10.1093/nar/gkae1133

By:

Tang, Yaqian;
Wu, Dan;
Zhang, Yueying;
Liu, Xuan;
Chu, Hui;
Tan, Qian;
Jiang, Lixu;
Chen, Shi;
Wu, Geng;
Wang, Lianrong

Publication type:

Article

Utilizing insights of DNA repair machinery to discover MMEJ deletions and novel mechanisms.

Published in:

Nucleic Acids Research, 2024, n. 22, p. e106, doi. 10.1093/nar/gkae1132

By:

Kadam, Aditee;
Shilo, Shay;
Naor, Hadas;
Wainstein, Alexander;
Brilon, Yardena;
Feldman, Tzah;
Minden, Mark;
Kaushansky, Nathali;
Chapal-Ilani, Noa;
Shlush, Liran

Publication type:

Article

Control of iron acquisition by multiple small RNAs unravels a new role for transcriptional terminator loops in gene regulation.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13775, doi. 10.1093/nar/gkae1131

By:

Solchaga Flores, Eugenio;
Jagodnik, Jonathan;
Quenette, Fanny;
Korepanov, Alexey;
Guillier, Maude

Publication type:

Article

RNA G-quadruplex formation in biologically important transcribed regions: can two-tetrad intramolecular RNA quadruplexes be formed?

Published in:

Nucleic Acids Research, 2024, v. 52, n. 21, p. 13224, doi. 10.1093/nar/gkae927

By:

Basu, Pritha;
Kejnovská, Iva;
Gajarský, Martin;
Šubert, Denis;
Mikešová, Tereza;
Renčiuk, Daniel;
Trantírek, Lukáš;
Mergny, Jean-Louis;
Vorlíčková, Michaela

Publication type:

Article

Bacterial Rps3 counters oxidative and UV stress by recognizing and processing AP-sites on mRNA via a novel mechanism.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13996, doi. 10.1093/nar/gkae1130

By:

Afsar, Mohammad;
Shukla, Ankita;
Ali, Faiz;
Maurya, Rahul Kumar;
Bharti, Suman;
Kumar, Nelam;
Sadik, Mohammad;
Chandra, Surabhi;
Rahil, Huma;
Kumar, Sanjay;
Ansari, Imran;
Jahan, Farheen;
Habib, Saman;
Hussain, Tanweer;
Krishnan, Manju Yasoda;
Ramachandran, Ravishankar

Publication type:

Article

Identifying key underlying regulatory networks and predicting targets of orphan C/D box SNORD116 snoRNAs in Prader–Willi syndrome.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13757, doi. 10.1093/nar/gkae1129

By:

Gilmore, Rachel B;
Liu, Yaling;
Stoddard, Christopher E;
Chung, Michael S;
Carmichael, Gordon G;
Cotney, Justin

Publication type:

Article

Interpreting CRISPR-Cas12a enzyme kinetics through free energy change of nucleic acids.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14077, doi. 10.1093/nar/gkae1124

By:

Zhang, Jiongyu;
Guan, Xin;
Moon, Jeong;
Zhang, Shuo;
Jia, Zhengyang;
Yang, Rui;
Hou, Chengyu;
Guo, Chong;
Pei, Minjie;
Liu, Changchun

Publication type:

Article

High-throughput capture of transcription factor-driven epigenome dynamics using PHILO ChIP-seq.

Published in:

Nucleic Acids Research, 2024, n. 22, p. e105, doi. 10.1093/nar/gkae1123

By:

Choudhary, Aanchal;
Ammari, Moonia;
Yoon, Hyuk Sung;
Zander, Mark

Publication type:

Article

Optimization of ACE-tRNAs function in translation for suppression of nonsense mutations.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14112, doi. 10.1093/nar/gkae1112

By:

Porter, Joseph J;
Ko, Wooree;
Sorensen, Emily G;
Lueck, John D

Publication type:

Article

Molecular basis for thiocarboxylation and release of Urm1 by its E1-activating enzyme Uba4.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13980, doi. 10.1093/nar/gkae1111

By:

Sokołowski, Mikołaj;
Kwasna, Dominika;
Ravichandran, Keerthiraju E;
Eggers, Cristian;
Krutyhołowa, Rościsław;
Kaczmarczyk, Magdalena;
Skupien-Rabian, Bozena;
Jaciuk, Marcin;
Walczak, Marta;
Dahate, Priyanka;
Pabis, Marta;
Jemioła-Rzemińska, Małgorzata;
Jankowska, Urszula;
Leidel, Sebastian A;
Glatt, Sebastian

Publication type:

Article

Chemotherapeutic agents and leucine deprivation induce codon-biased aberrant protein production in cancer.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13964, doi. 10.1093/nar/gkae1110

By:

Kochavi, Adva;
Nagel, Remco;
Körner, Pierre-Rene;
Bleijerveld, Onno B;
Lin, Chun-Pu;
Huinen, Zowi;
Malka, Yuval;
Proost, Natalie;
van de Ven, Marieke;
Feng, Xiaodong;
Navarro, Jasmine Montenegro;
Pataskar, Abhijeet;
Peeper, Daniel S;
Champagne, Julien;
Agami, Reuven

Publication type:

Article

Intrinsically disordered RNA-binding motifs cooperate to catalyze RNA folding and drive phase separation.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14205, doi. 10.1093/nar/gkae1107

By:

Niedner-Boblenz, Annika;
Monecke, Thomas;
Hennig, Janosch;
Klostermann, Melina;
Hofweber, Mario;
Davydova, Elena;
Gerber, André P;
Anosova, Irina;
Mayer, Wieland;
Müller, Marisa;
Heym, Roland Gerhard;
Janowski, Robert;
Paillart, Jean-Christophe;
Dormann, Dorothee;
Zarnack, Kathi;
Sattler, Michael;
Niessing, Dierk

Publication type:

Article

Distinct interactomes of ADAR1 nuclear and cytoplasmic protein isoforms and their responses to interferon induction.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14184, doi. 10.1093/nar/gkae1106

By:

Vukić, Dragana;
Cherian, Anna;
Keskitalo, Salla;
Bong, Yih Tyng;
Marônek, Martin;
Yadav, Leena;
Keegan, Liam P;
Varjosalo, Markku;
O'Connell, Mary A

Publication type:

Article

UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13733, doi. 10.1093/nar/gkae1105

By:

Tiedemann, Rochelle L;
Hrit, Joel;
Du, Qian;
Wiseman, Ashley K;
Eden, Hope E;
Dickson, Bradley M;
Kong, Xiangqian;
Chomiak, Alison A;
Vaughan, Robert M;
Tibben, Bailey M;
Hebert, Jakob M;
David, Yael;
Zhou, Wanding;
Baylin, Stephen B;
Jones, Peter A;
Clark, Susan J;
Rothbart, Scott B

Publication type:

Article

Circular oligomeric particles formed by Ros/MucR family members mediate DNA organization in α-proteobacteria.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13945, doi. 10.1093/nar/gkae1104

By:

Chaves-Sanjuan, Antonio;
D'Abrosca, Gianluca;
Russo, Veronica;
van Erp, Bert;
Del Cont-Bernard, Alessandro;
Capelli, Riccardo;
Pirone, Luciano;
Slapakova, Martina;
Sgambati, Domenico;
Fattorusso, Roberto;
Isernia, Carla;
Russo, Luigi;
Barton, Ian S;
Roop, Roy Martin;
Pedone, Emilia M;
Bolognesi, Martino;
Dame, Remus T;
Pedone, Paolo V;
Nardini, Marco;
Malgieri, Gaetano

Publication type:

Article

Retargeting target-directed microRNA-decay sites to highly expressed viral or cellular miRNAs.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14171, doi. 10.1093/nar/gkae1103

By:

Ortega, Jesus A;
Liang, Ziyan;
Xu, Junpeng Kenny;
Gottwein, Eva

Publication type:

Article

Glucose binds and activates NSUN2 to promote translation and epidermal differentiation.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13577, doi. 10.1093/nar/gkae1097

By:

Miao, Weili;
Porter, Douglas F;
Li, Ya;
Meservey, Lindsey M;
Yang, Yen-Yu;
Ma, Chengjie;
Ferguson, Ian D;
Tien, Vivian B;
Jack, Timothy M;
Ducoli, Luca;
Lopez-Pajares, Vanessa;
Tao, Shiying;
Savage, Paul B;
Wang, Yinsheng;
Khavari, Paul A

Publication type:

Article

STK39-mediated amplification of γ-H2A.X promotes homologous recombination and contributes to PARP inhibitor resistance.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13881, doi. 10.1093/nar/gkae1099

By:

Xu, Yi;
Li, Changying;
Yin, Huan;
Nowsheen, Somaira;
Xu, Xin;
Kang, Wenjuan;
Liu, Xin;
Chen, Lifeng;
Lou, Zhenkun;
Yi, Junlin;
Deng, Min

Publication type:

Article

Phosphorylation-mediated disassembly of C-terminal binding protein 2 tetramer impedes epigenetic silencing of pluripotency in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13706, doi. 10.1093/nar/gkae1076

By:

Lee, Han-Teo;
Kim, Young Ah;
Lee, Sangho;
Jung, Ye-Eun;
Kim, Hanbyeol;
Kim, Tae Wan;
Kwak, Sojung;
Kim, Jaehyeon;
Lee, Chul-Hwan;
Cha, Sun-Shin;
Choi, Jinmi;
Cho, Eun-Jung;
Youn, Hong-Duk

Publication type:

Article

Tetramerization of deoxyadenosine kinase meets the demands of a DNA replication substrate challenge in Giardia intestinalis.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 14061, doi. 10.1093/nar/gkae1073

By:

Ranjbarian, Farahnaz;
Rafie, Karim;
Shankar, Kasturika;
Krakovka, Sascha;
Carlson, Lars-Anders;
Hofer, Anders

Publication type:

Article

Single-stranded DNA with internal base modifications mediates highly efficient knock-in in primary cells using CRISPR-Cas9.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13561, doi. 10.1093/nar/gkae1069

By:

Kanke, Karen L;
Rayner, Rachael E;
Bozik, Jack;
Abel, Eli;
Venugopalan, Aparna;
Suu, Ma;
Nouri, Reza;
Stack, Jacob T;
Guo, Gongbo;
Vetter, Tatyana A;
Cormet-Boyaka, Estelle;
Hester, Mark E;
Vaidyanathan, Sriram

Publication type:

Article

Dimerization of the deaminase domain and locking interactions with Cas9 boost base editing efficiency in ABE8e.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13931, doi. 10.1093/nar/gkae1066

By:

Arantes, Pablo R;
Chen, Xiaoyu;
Sinha, Souvik;
Saha, Aakash;
Patel, Amun C;
Sample, Matthew;
Nierzwicki, Łukasz;
Lapinaite, Audrone;
Palermo, Giulia

Publication type:

Article

CAF-1 promotes efficient PrimPol recruitment to nascent DNA for single-stranded DNA gap formation.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13865, doi. 10.1093/nar/gkae1068

By:

Straka, Joshua;
Khatib, Jude B;
Pale, Lindsey;
Nicolae, Claudia M;
Moldovan, George-Lucian

Publication type:

Article

Full-length direct RNA sequencing reveals extensive remodeling of RNA expression, processing and modification in aging Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13896, doi. 10.1093/nar/gkae1064

By:

Schiksnis, Erin C;
Nicastro, Ian A;
Pasquinelli, Amy E

Publication type:

Article

SETDB1 activity is globally directed by H3K14 acetylation via its Triple Tudor Domain.

Published in:

Nucleic Acids Research, 2024, n. 22, p. 13690, doi. 10.1093/nar/gkae1053

By:

Chandrasekaran, Thyagarajan T;
Choudalakis, Michel;
Bröhm, Alexander;
Weirich, Sara;
Kouroukli, Alexandra G;
Ammerpohl, Ole;
Rathert, Philipp;
Bashtrykov, Pavel;
Jeltsch, Albert

Publication type:

Article

RADIP technology comprehensively identifies H3K27me3-associated RNA–chromatin interactions.

Published in:

Nucleic Acids Research, 2024, n. 22, p. e104, doi. 10.1093/nar/gkae1054

By:

Shu, Xufeng;
Kato, Masaki;
Takizawa, Satoshi;
Suzuki, Yutaka;
Carninci, Piero

Publication type:

Article