Works matching IS 03051048 AND DT 2023 AND VI 52 AND IP 22

Results: 44

The proofreading exonuclease of leading-strand DNA polymerase epsilon prevents replication fork collapse at broken template strands.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12288, doi. 10.1093/nar/gkad999

By:

Ahmad, Tasnim;
Kawasumi, Ryotaro;
Taniguchi, Tomoya;
Abe, Takuya;
Terada, Kazuhiro;
Tsuda, Masataka;
Shimizu, Naoto;
Tsurimoto, Toshiki;
Takeda, Shunichi;
Hirota, Kouji

Publication type:

Article

The translational oscillation in oocyte and early embryo development.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12076, doi. 10.1093/nar/gkad996

By:

Iyyappan, Rajan;
Aleshkina, Daria;
Ming, Hao;
Dvoran, Michal;
Kakavand, Kianoush;
Jansova, Denisa;
del Llano, Edgar;
Gahurova, Lenka;
Bruce, Alexander W;
Masek, Tomas;
Pospisek, Martin;
Horvat, Filip;
Kubelka, Michal;
Jiang, Zongliang;
Susor, Andrej

Publication type:

Article

Rapid characterization of anti-CRISPR proteins and optogenetically engineered variants using a versatile plasmid interference system.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12381, doi. 10.1093/nar/gkad995

By:

Song, Guoxu;
Tian, Chunhong;
Li, Jiahui;
Zhang, Fei;
Peng, Yuxin;
Gao, Xing;
Tian, Yong

Publication type:

Article

The forkhead DNA-binding domain binds specific G<sub>2</sub>-rich RNA sequences.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12367, doi. 10.1093/nar/gkad994

By:

Zutterling, Caroline;
Todeschini, Anne-Laure;
Fourmy, Deborah;
Busso, Didier;
Veaute, Xavier;
Ducongé, Frédéric;
Veitia, Reiner A

Publication type:

Article

To let go or not to let go: how ParA can impact the release of the chromosomal anchoring in Caulobacter crescentus.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12275, doi. 10.1093/nar/gkad982

By:

Puentes-Rodriguez, Stephanie G;
Norcross, John D;
Mera, Paola E

Publication type:

Article

Decoding complexity in biomolecular recognition of DNA i-motifs with microarrays.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12020, doi. 10.1093/nar/gkad981

By:

Yazdani, Kamyar;
Seshadri, Srinath;
Tillo, Desiree;
Yang, Mo;
Sibley, Christopher D;
Vinson, Charles;
Schneekloth, John S

Publication type:

Article

PacBio sequencing of human fecal samples uncovers the DNA methylation landscape of 22 673 gut phages.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12140, doi. 10.1093/nar/gkad977

By:

Ding, Yanqiang;
Zhao, Liuyang;
Wang, Guoping;
Shi, Yu;
Guo, Gang;
Liu, Changan;
Chen, Zigui;
Coker, Olabisi Oluwabukola;
She, Junjun;
Yu, Jun

Publication type:

Article

Differing structures and dynamics of two photolesions portray verification differences by the human XPD helicase.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12261, doi. 10.1093/nar/gkad974

By:

Fu, Iwen;
Geacintov, Nicholas E;
Broyde, Suse

Publication type:

Article

Structural basis for the allosteric regulation and dynamic assembly of DNMT3B.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12476, doi. 10.1093/nar/gkad972

By:

Lu, Jiuwei;
Fang, Jian;
Zhu, Hongtao;
Liang, Kimberly Lu;
Khudaverdyan, Nelli;
Song, Jikui

Publication type:

Article

Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12443, doi. 10.1093/nar/gkad971

By:

Orris, Benjamin;
Sung, Min Woo;
Bhat, Shridhar;
Xu, Yingrong;
Huynh, Kevin W;
Han, Seungil;
Johnson, Darren C;
Bosbach, Benedikt;
Shields, David J;
Stivers, James T

Publication type:

Article

Exploiting public databases of genomic variation to quantify evolutionary constraint on the branch point sequence in 30 plant and animal species.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12069, doi. 10.1093/nar/gkad970

By:

Nosková, Adéla;
Li, Chao;
Wang, Xiaolong;
Leonard, Alexander S;
Pausch, Hubert;
Kadri, Naveen Kumar

Publication type:

Article

Improving the RNA velocity approach with single-cell RNA lifecycle (nascent, mature and degrading RNAs) sequencing technologies.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. e112, doi. 10.1093/nar/gkad969

By:

Zhang, Chen;
Fang, Yitong;
Chen, Weitian;
Chen, Zhichao;
Zhang, Ying;
Xie, Yeming;
Chen, Wenfang;
Xie, Zhe;
Guo, Mei;
Wang, Juan;
Tan, Chen;
Wang, Hongqi;
Tang, Chong

Publication type:

Article

Splicing factor Prp18p promotes genome-wide fidelity of consensus 3′-splice sites.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12428, doi. 10.1093/nar/gkad968

By:

Roy, Kevin R;
Gabunilas, Jason;
Neutel, Dean;
Ai, Michelle;
Yeh, Zoe;
Samson, Joyce;
Lyu, Guochang;
Chanfreau, Guillaume F

Publication type:

Article

The RNA-binding motif protein 14 regulates telomere integrity at the interface of TERRA and telomeric R-loops.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12242, doi. 10.1093/nar/gkad967

By:

Wang, Yajun;
Zhu, Wei;
Jang, Yumi;
Sommers, Joshua A;
Yi, Gong;
Puligilla, Chandrakala;
Croteau, Deborah L;
Yang, Yibin;
Kai, Mihoko;
Liu, Yie

Publication type:

Article

Rapid in situ RNA imaging based on Cas12a thrusting strand displacement reaction.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. e111, doi. 10.1093/nar/gkad953

By:

Cheng, Xiaoxue;
Li, Xiaosong;
Kang, Yuexi;
Zhang, Decai;
Yu, Qiubo;
Chen, Junman;
Li, Xinyu;
Du, Li;
Yang, Tiantian;
Gong, Yao;
Yi, Ming;
Zhang, Songzhi;
Zhu, Shasha;
Ding, Shijia;
Cheng, Wei

Publication type:

Article

TATDN2 resolution of R-loops is required for survival of BRCA1-mutant cancer cells.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12224, doi. 10.1093/nar/gkad952

By:

Jaiswal, Aruna S;
Dutta, Arijit;
Srinivasan, Gayathri;
Yuan, Yaxia;
Zhou, Daohong;
Shaheen, Montaser;
Sadideen, Doraid T;
Kirby, Austin;
Williamson, Elizabeth A;
Gupta, Yogesh K;
Olsen, Shaun K;
Xu, Mingjiang;
Loranc, Eva;
Mukhopadhyay, Pramiti;
Pertsemlidis, Alexander;
Bishop, Alexander J R;
Sung, Patrick;
Nickoloff, Jac A;
Hromas, Robert

Publication type:

Article

GenoPipe: identifying the genotype of origin within (epi)genomic datasets.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12054, doi. 10.1093/nar/gkad950

By:

Lang, Olivia W;
Srivastava, Divyanshi;
Pugh, B Franklin;
Lai, William K M

Publication type:

Article

Genetic variations in G-quadruplex forming sequences affect the transcription of human disease-related genes.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12124, doi. 10.1093/nar/gkad948

By:

Lorenzatti, Agustín;
Piga, Ernesto J;
Gismondi, Mauro;
Binolfi, Andrés;
Margarit, Ezequiel;
Calcaterra, Nora B;
Armas, Pablo

Publication type:

Article

Human lysyl-tRNA synthetase phosphorylation promotes HIV-1 proviral DNA transcription.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12111, doi. 10.1093/nar/gkad941

By:

Tang, Yingke;
Behrens, Ryan T;
St Gelais, Corine;
Wu, Siqi;
Vivekanandan, Saravanan;
Razin, Ehud;
Fang, Pengfei;
Wu, Li;
Sherer, Nathan;
Musier-Forsyth, Karin

Publication type:

Article

Human HELQ regulates DNA end resection at DNA double-strand breaks and stalled replication forks.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12207, doi. 10.1093/nar/gkad940

By:

Zhao, Yuqin;
Hou, Kaiping;
Li, Youhang;
Hao, Shuailin;
Liu, Yu;
Na, Yinan;
Li, Chao;
Cui, Jian;
Xu, Xingzhi;
Wu, Xiaohua;
Wang, Hailong

Publication type:

Article

Correction to 'An archaeal virus-encoded anti-CRISPR protein inhibits type III-B immunity by inhibiting Cas RNP complex turnover'.

Published in:: 2023
Publication type:: Correction Notice

Elevated MSH2 MSH3 expression interferes with DNA metabolism in vivo.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12185, doi. 10.1093/nar/gkad934

By:

Medina-Rivera, Melisa;
Phelps, Samantha;
Sridharan, Madhumita;
Becker, Jordan;
Lamb, Natalie A;
Kumar, Charanya;
Sutton, Mark D;
Bielinsky, Anja;
Balakrishnan, Lata;
Surtees, Jennifer A

Publication type:

Article

Molecular basis for SOX2-dependent regulation of super-enhancer activity.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 11999, doi. 10.1093/nar/gkad908

By:

Yoo, Wanki;
Song, Yi Wei;
Kim, Jihyun;
Ahn, Jihye;
Kim, Jaehoon;
Shin, Yongdae;
Ryu, Je-Kyung;
Kim, Kyeong Kyu

Publication type:

Article

Ubiquitin signaling and the proteasome drive human DNA–protein crosslink repair.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12174, doi. 10.1093/nar/gkad860

By:

Essawy, Maram;
Chesner, Lisa;
Alshareef, Duha;
Ji, Shaofei;
Tretyakova, Natalia;
Campbell, Colin

Publication type:

Article

Unprecedented enantio-selective live-cell mitochondrial DNA super-resolution imaging and photo-sensitizing by the chiral ruthenium polypyridyl DNA "light-switch".

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 11981, doi. 10.1093/nar/gkad799

By:

Huang, Rong;
Huang, Chun-Hua;
Chen, Jing;
Yan, Zhu-Ying;
Tang, Miao;
Shao, Jie;
Cai, Kaiyong;
Zhu, Ben-Zhan

Publication type:

Article

The three-dimensional structure of the EBV genome plays a crucial role in regulating viral gene expression in EBVaGC.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12092, doi. 10.1093/nar/gkad936

By:

Maestri, Davide;
Napoletani, Giorgia;
Kossenkov, Andrew;
Preston-Alp, Sarah;
Caruso, Lisa B;
Tempera, Italo

Publication type:

Article

Editor's Note on 'Influence of correct secondary and tertiary RNA folding on the binding of cellular factors to the HCV IRES'.

Published in:: Nucleic Acids Research, 2023, v. 52, n. 22, p. 12538, doi. 10.1093/nar/gkad1100
Publication type:: Article

Structural and biochemical insights into NEIL2's preference for abasic sites.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12508, doi. 10.1093/nar/gkad1075

By:

Eckenroth, Brian E;
Bumgarner, Joshua D;
Matsumoto-Elliott, Olivia;
David, Sheila S;
Doublié, Sylvie

Publication type:

Article

Genome-wide transformation reveals extensive exchange across closely related Bacillus species.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12352, doi. 10.1093/nar/gkad1074

By:

Förster, Mona;
Rathmann, Isabel;
Yüksel, Melih;
Power, Jeffrey J;
Maier, Berenike

Publication type:

Article

Topoisomerase 1 facilitates nucleosome reassembly at stress genes during recovery.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12161, doi. 10.1093/nar/gkad1066

By:

Vega, Montserrat;
Barrios, Rubén;
Fraile, Rodrigo;
de Castro Cogle, Kevin;
Castillo, David;
Anglada, Roger;
Casals, Ferran;
Ayté, José;
Lowy-Gallego, Ernesto;
Hidalgo, Elena

Publication type:

Article

Structural and biochemical analysis of the PARP1-homology region of PARP4/vault PARP.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12492, doi. 10.1093/nar/gkad1064

By:

Frigon, Léonie;
Pascal, John M

Publication type:

Article

Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12414, doi. 10.1093/nar/gkad1053

By:

Yoon, Peter H;
Skopintsev, Petr;
Shi, Honglue;
Chen, LinXing;
Adler, Benjamin A;
Al-Shimary, Muntathar;
Craig, Rory J;
Loi, Kenneth J;
DeTurk, Evan C;
Li, Zheng;
Amerasekera, Jasmine;
Trinidad, Marena;
Nisonoff, Hunter;
Chen, Kai;
Lahiri, Arushi;
Boger, Ron;
Jacobsen, Steve;
Banfield, Jillian F;
Doudna, Jennifer A

Publication type:

Article

Conformation-dependent lesion bypass of bulky arylamine-dG adducts generated from 2-nitrofluorene in epigenetic sequence contexts.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12043, doi. 10.1093/nar/gkad1038

By:

Crisalli, Alicia M;
Chen, Yi-Tzai;
Cai, Ang;
Li, Deyu;
Cho, Bongsup P

Publication type:

Article

Pot1 promotes telomere DNA replication via the Stn1-Ten1 complex in fission yeast.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12325, doi. 10.1093/nar/gkad1036

By:

Carvalho Borges, Pâmela C;
Bouabboune, Chaïnez;
Escandell, Jose Miguel;
Matmati, Samah;
Coulon, Stéphane;
Ferreira, Miguel Godinho

Publication type:

Article

Alternative splicing induced by bacterial pore-forming toxins sharpens CIRBP-mediated cell response to Listeria infection.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12459, doi. 10.1093/nar/gkad1033

By:

Corre, Morgane;
Boehm, Volker;
Besic, Vinko;
Kurowska, Anna;
Viry, Anouk;
Mohammad, Ammara;
Sénamaud-Beaufort, Catherine;
Thomas-Chollier, Morgane;
Lebreton, Alice

Publication type:

Article

Metagenomics harvested genus-specific single-stranded DNA-annealing proteins improve and expand recombineering in Pseudomonas species.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12522, doi. 10.1093/nar/gkad1024

By:

Asin-Garcia, Enrique;
Garcia-Morales, Luis;
Bartholet, Tessa;
Liang, Zhuobin;
Isaacs, Farren J;
Martins dos Santos, Vitor A P

Publication type:

Article

Probabilistic cell/domain-type assignment of spatial transcriptomics data with SpatialAnno.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. e115, doi. 10.1093/nar/gkad1023

By:

Shi, Xingjie;
Yang, Yi;
Ma, Xiaohui;
Zhou, Yong;
Guo, Zhenxing;
Wang, Chaolong;
Liu, Jin

Publication type:

Article

High-fidelity large-diversity monoclonal mammalian cell libraries by cell cycle arrested recombinase-mediated cassette exchange.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. e113, doi. 10.1093/nar/gkad1001

By:

Chen, Chuan;
Wang, Zening;
Kang, Minhyo;
Lee, Ki Baek;
Ge, Xin

Publication type:

Article

Decoding dissociation of sequence-specific protein–DNA complexes with non-equilibrium simulations.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12150, doi. 10.1093/nar/gkad1014

By:

van Heesch, Thor;
Bolhuis, Peter G;
Vreede, Jocelyne

Publication type:

Article

BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. e114, doi. 10.1093/nar/gkad1010

By:

Höjer, Pontus;
Frick, Tobias;
Siga, Humam;
Pourbozorgi, Parham;
Aghelpasand, Hooman;
Martin, Marcel;
Ahmadian, Afshin

Publication type:

Article

Inter-generational nuclear crosstalk links the control of gene expression to programmed genome rearrangement during the Paramecium sexual cycle.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12337, doi. 10.1093/nar/gkad1006

By:

Bazin-Gélis, Mélanie;
Eleftheriou, Evangelia;
Zangarelli, Coralie;
Lelandais, Gaëlle;
Sperling, Linda;
Arnaiz, Olivier;
Bétermier, Mireille

Publication type:

Article

Uridine–cytidine kinase 2 potentiates the mutagenic influence of the antiviral β-d-N4-hydroxycytidine.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12031, doi. 10.1093/nar/gkad1002

By:

Xu, Zhen;
Flensburg, Christoffer;
Bilardi, Rebecca A;
Majewski, Ian J

Publication type:

Article

Single molecule MATAC-seq reveals key determinants of DNA replication origin efficiency.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12303, doi. 10.1093/nar/gkad1022

By:

Chanou, Anna;
Weiβ, Matthias;
Holler, Karoline;
Sajid, Atiqa;
Straub, Tobias;
Krietsch, Jana;
Sanchi, Andrea;
Ummethum, Henning;
Lee, Clare S K;
Kruse, Elisabeth;
Trauner, Manuel;
Werner, Marcel;
Lalonde, Maxime;
Lopes, Massimo;
Scialdone, Antonio;
Hamperl, Stephan

Publication type:

Article

Binding of microRNA-122 to the hepatitis C virus 5′ untranslated region modifies interactions with poly(C) binding protein 2 and the NS5B viral polymerase.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12397, doi. 10.1093/nar/gkad1000

By:

Scott, Seth;
Li, You;
Bermek, Oya;
Griffith, Jack D;
Lemon, Stanley M;
Choi, Kyung H

Publication type:

Article