Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 7

Results: 41

Design principles and functional basis of enantioselectivity of alanyl-tRNA synthetase and a chiral proofreader during protein biosynthesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3327, doi. 10.1093/nar/gkad205

By:

Sivakumar, Koushick;
Venkadasamy, Vinitha Lakshmi;
Amudhan, Gurumoorthy;
Ann, Kezia J;
Goud, Gadela Karteek;
Nayani, Kiranmai;
Gogoi, Jotin;
Kuncha, Santosh Kumar;
Mainkar, Prathama S;
Kruparani, Shobha P;
Sankaranarayanan, Rajan

Publication type:

Article

Expression of concern on 'MiR-145 directly targets p70S6K1 in cancer cells to inhibit tumor growth and angiogenesis'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'EMPIAR: The Electron Microscopy Public Image Archive'.

Published in:: 2023
Publication type:: Correction Notice

Unmasking the tissue-resident eukaryotic DNA virome in humans.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3223, doi. 10.1093/nar/gkad199

By:

Pyöriä, Lari;
Pratas, Diogo;
Toppinen, Mari;
Hedman, Klaus;
Sajantila, Antti;
Perdomo, Maria F

Publication type:

Article

Automating microbial taxonomy workflows with PHANTASM: phylogenomic analyses for the taxonomy and systematics of microbes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3067, doi. 10.1093/nar/gkad196

By:

Wirth, Joseph S;
Bush, Eliot C

Publication type:

Article

Single-molecule visualization of stalled replication-fork rescue by the Escherichia coli Rep helicase.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3307, doi. 10.1093/nar/gkad186

By:

Whinn, Kelsey S;
Xu, Zhi-Qiang;
Jergic, Slobodan;
Sharma, Nischal;
Spenkelink, Lisanne M;
Dixon, Nicholas E;
van Oijen, Antoine M;
Ghodke, Harshad

Publication type:

Article

Correction to 'Control of backbone chemistry and chirality boost oligonucleotide splice switching activity'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'Structure of a 28.5 kDa duplex-embedded G-quadruplex system resolved to 7.4 Å resolution with cryo-EM'.

Published in:: 2023
Publication type:: Correction Notice

Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3436, doi. 10.1093/nar/gkad176

By:

Majumdar, Soneya;
Emmerich, Andrew;
Krakovka, Sascha;
Mandava, Chandra Sekhar;
Sanyal, Suparna

Publication type:

Article

Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3485, doi. 10.1093/nar/gkad170

By:

Rostain, William;
Grebert, Theophile;
Vyhovskyi, Danylo;
Pizarro, Paula Thiel;
Tshinsele-Van Bellingen, Gatwa;
Cui, Lun;
Bikard, David

Publication type:

Article

Precise homology-directed installation of large genomic edits in human cells with cleaving and nicking high-specificity Cas9 variants.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3465, doi. 10.1093/nar/gkad165

By:

Wang, Qian;
Liu, Jin;
Janssen, Josephine M;
Gonçalves, Manuel A F V

Publication type:

Article

Tissue-specific regulation of gene expression via unproductive splicing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3055, doi. 10.1093/nar/gkad161

By:

Mironov, Alexei;
Petrova, Marina;
Margasyuk, Sergey;
Vlasenok, Maria;
Mironov, Andrey A;
Skvortsov, Dmitry;
Pervouchine, Dmitri D

Publication type:

Article

Homologous recombination suppresses transgenerational DNA end resection and chromosomal instability in fission yeast.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3205, doi. 10.1093/nar/gkad160

By:

Pai, Chen-Chun;
Durley, Samuel C;
Cheng, Wei-Chen;
Chiang, Nien-Yi;
Peters, Jennifer;
Kasparek, Torben;
Blaikley, Elizabeth;
Wee, Boon-Yu;
Walker, Carol;
Kearsey, Stephen E;
Buffa, Francesca;
Murray, Johanne M;
Humphrey, Timothy C

Publication type:

Article

Unusual enantioselective cytoplasm-to-nucleus translocation and photosensitization of the chiral Ru(II) cationic complex via simple ion-pairing with lipophilic weak acid counter-anions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3041, doi. 10.1093/nar/gkad155

By:

Chao, Xi-Juan;
Huang, Chun-Hua;
Tang, Miao;
Yan, Zhu-Ying;
Huang, Rong;
Li, Yan;
Zhu, Ben-Zhan

Publication type:

Article

PML and PML-like exonucleases restrict retrotransposons in jawed vertebrates.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3185, doi. 10.1093/nar/gkad152

By:

Mathavarajah, Sabateeshan;
Vergunst, Kathleen L;
Habib, Elias B;
Williams, Shelby K;
He, Raymond;
Maliougina, Maria;
Park, Mika;
Salsman, Jayme;
Roy, Stéphane;
Braasch, Ingo;
Roger, Andrew J;
Langelaan, David N;
Dellaire, Graham

Publication type:

Article

MIRELLA: a mathematical model explains the effect of microRNA-mediated synthetic genes regulation on intracellular resource allocation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3452, doi. 10.1093/nar/gkad151

By:

Cella, Federica;
Perrino, Giansimone;
Tedeschi, Fabiana;
Viero, Gabriella;
Bosia, Carla;
Stan, Guy-Bart;
Siciliano, Velia

Publication type:

Article

LncRNA HOTAIRM1 functions in DNA double-strand break repair via its association with DNA repair and mRNA surveillance factors.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3166, doi. 10.1093/nar/gkad143

By:

Chuang, Tzu-Wei;
Su, Chun-Hao;
Wu, Pei-Yu;
Chang, Yao-Ming;
Tarn, Woan-Yuh

Publication type:

Article

PRRC2 proteins impact translation initiation by promoting leaky scanning.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3391, doi. 10.1093/nar/gkad135

By:

Bohlen, Jonathan;
Roiuk, Mykola;
Neff, Marilena;
Teleman, Aurelio A

Publication type:

Article

Effective extraction of polyribosomes exposes gene expression strategies in primary astrocytes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3375, doi. 10.1093/nar/gkad131

By:

Mandelboum, Shir;
Herrero, Melisa;
Atzmon, Andrea;
Ehrlich, Marcelo;
Elroy-Stein, Orna

Publication type:

Article

The MksG nuclease is the executing part of the bacterial plasmid defense system MksBEFG.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3288, doi. 10.1093/nar/gkad130

By:

Weiß, Manuela;
Giacomelli, Giacomo;
Assaya, Mathilde Ben;
Grundt, Finja;
Haouz, Ahmed;
Peng, Feng;
Petrella, Stéphanie;
Wehenkel, Anne Marie;
Bramkamp, Marc

Publication type:

Article

Proteomic analyses reveal new features of the box H/ACA RNP biogenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3357, doi. 10.1093/nar/gkad129

By:

Schlotter, Florence;
Mérouani, Salim;
Flayac, Justine;
Kogey, Valentyne;
Issa, Amani;
Dodré, Maxime;
Huttin, Alexandra;
Branlant, Christiane;
Bertrand, Edouard;
Labialle, Stéphane;
Vandermoere, Franck;
Verheggen, Céline;
Massenet, Séverine

Publication type:

Article

Heavy metal ions exchange driven protein phosphorylation cascade functions in genomic instability in spermatocytes and male infertility.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3150, doi. 10.1093/nar/gkad128

By:

Li, Ren-Yan;
Yang, Dan;
He, Yan-Ji;
Zhou, Yong;
Li, Cheng-Cheng;
Li, Lian-Bing;
Liao, Ming-Xing;
Deng, Zhong-Liang;
Zhao, Le-Tian;
Zhang, Tian-Feng;
Luo, Yong;
Wang, Ying-Xiong;
Gao, Yan-Fei

Publication type:

Article

YbiB: a novel interactor of the GTPase ObgE.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3420, doi. 10.1093/nar/gkad127

By:

Deckers, Babette;
Vercauteren, Silke;
De Kock, Veerke;
Martin, Charlotte;
Lazar, Tamas;
Herpels, Pauline;
Dewachter, Liselot;
Verstraeten, Natalie;
Peeters, Eveline;
Ballet, Steven;
Michiels, Jan;
Galicia, Christian;
Versées, Wim

Publication type:

Article

Structural insights into the binding of bS1 to the ribosome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3410, doi. 10.1093/nar/gkad126

By:

D'Urso, Gaetano;
Chat, Sophie;
Gillet, Reynald;
Giudice, Emmanuel

Publication type:

Article

A virus-borne DNA damage signaling pathway controls the lysogeny-induction switch in a group of temperate pleolipoviruses.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3270, doi. 10.1093/nar/gkad125

By:

Chen, Zhao;
Liu, Ying;
Wang, Yixuan;
Du, Xincheng;
Deng, Xiaoyuan;
Xiang, Jialin;
Wang, Yangyang;
Wang, Jiao;
Krupovic, Mart;
Du, Shishen;
Chen, Xiangdong

Publication type:

Article

RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3341, doi. 10.1093/nar/gkad122

By:

Li, Jun;
Chen, Shi-Jie

Publication type:

Article

Weak tension accelerates hybridization and dehybridization of short oligonucleotides.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3030, doi. 10.1093/nar/gkad118

By:

Hart, Derek J;
Jeong, Jiyoun;
Gumbart, James C;
Kim, Harold D

Publication type:

Article

Bisulfite probing reveals DNA structural intricacies.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3261, doi. 10.1093/nar/gkad115

By:

Bagshaw, Andrew T M;
Gemmell, Neil J

Publication type:

Article

SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e42, doi. 10.1093/nar/gkad111

By:

Flemington, Erik K;
Flemington, Samuel A;
O'Grady, Tina M;
Baddoo, Melody;
Nguyen, Trang;
Dong, Yan;
Ungerleider, Nathan A

Publication type:

Article

Development of a selection assay for small guide RNAs that drive efficient site-directed RNA editing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e41, doi. 10.1093/nar/gkad098

By:

Diaz Quiroz, Juan Felipe;
Ojha, Namrata;
Shayhidin, Elnur E;
De Silva, Dasuni;
Dabney, Jesse;
Lancaster, Amy;
Coull, James;
Milstein, Stuart;
Fraley, Andrew W;
Brown, Christopher R;
Rosenthal, Joshua J C

Publication type:

Article

Fitness functions for RNA structure design.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e40, doi. 10.1093/nar/gkad097

By:

Ward, Max;
Courtney, Eliot;
Rivas, Elena

Publication type:

Article

Single-molecule analysis of DNA-binding proteins from nuclear extracts (SMADNE).

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e39, doi. 10.1093/nar/gkad095

By:

Schaich, Matthew A;
Schnable, Brittani L;
Kumar, Namrata;
Roginskaya, Vera;
Jakielski, Rachel C;
Urban, Roman;
Zhong, Zhou;
Kad, Neil M;
Van Houten, Bennett

Publication type:

Article

Actinobacillus pleuropneumoniae encodes multiple phase-variable DNA methyltransferases that control distinct phasevarions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3240, doi. 10.1093/nar/gkad091

By:

Nahar, Nusrat;
Tram, Greg;
Jen, Freda E-C;
Phillips, Zachary N;
Weinert, Lucy A;
Bossé, Janine T;
Jabbari, Jafar S;
Gouil, Quentin;
Du, Mei R M;
Ritchie, Matthew E;
Bowden, Rory;
Langford, Paul R;
Tucker, Alexander W;
Jennings, Michael P;
Turni, Conny;
Blackall, Patrick J;
Atack, John M

Publication type:

Article

Systematic identification of factors involved in the silencing of germline genes in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3130, doi. 10.1093/nar/gkad071

By:

Al Adhami, Hala;
Vallet, Judith;
Schaal, Celia;
Schumacher, Paul;
Bardet, Anaïs Flore;
Dumas, Michael;
Chicher, Johana;
Hammann, Philippe;
Daujat, Sylvain;
Weber, Michael

Publication type:

Article

Target search by an imported conjugative DNA element for a unique integration site along a bacterial chromosome during horizontal gene transfer.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3116, doi. 10.1093/nar/gkad068

By:

Arbel-Goren, Rinat;
McKeithen-Mead, Saria A;
Voglmaier, Dominik;
Afremov, Idana;
Teza, Gianluca;
Grossman, Alan D;
Stavans, Joel

Publication type:

Article

Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3094, doi. 10.1093/nar/gkad063

By:

Garg, Angad;
Sanchez, Ana M;
Miele, Matthew;
Schwer, Beate;
Shuman, Stewart

Publication type:

Article

DIS3L2 ribonuclease degrades terminal-uridylated RNA to ensure oocyte maturation and female fertility.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3078, doi. 10.1093/nar/gkad061

By:

Wu, Di;
Pedroza, Monique;
Chang, Jonathan;
Dean, Jurrien

Publication type:

Article

DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3017, doi. 10.1093/nar/gkad055

By:

Wang, Ruheng;
Jiang, Yi;
Jin, Junru;
Yin, Chenglin;
Yu, Haoqing;
Wang, Fengsheng;
Feng, Jiuxin;
Su, Ran;
Nakai, Kenta;
Zou, Quan;
Wei, Leyi

Publication type:

Article

Using single cell atlas data to reconstruct regulatory networks.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e38, doi. 10.1093/nar/gkad053

By:

Song, Qi;
Ruffalo, Matthew;
Bar-Joseph, Ziv

Publication type:

Article

SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e37, doi. 10.1093/nar/gkad036

By:

Develtere, Ward;
Waegneer, Evelien;
Debray, Kevin;
De Saeger, Jonas;
Van Glabeke, Sabine;
Maere, Steven;
Ruttink, Tom;
Jacobs, Thomas B

Publication type:

Article

Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. 3001, doi. 10.1093/nar/gkac1079

By:

Ares-Arroyo, Manuel;
Coluzzi, Charles;
Rocha, Eduardo P C

Publication type:

Article