Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 5

Results: 39

Correction to 'An intellectual disability-related MED23 mutation dysregulates gene expression by altering chromatin conformation and enhancer activities'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'CHD6 promotes broad nucleosome eviction for transcriptional activation in prostate cancer cells'.

Published in:: 2023
Publication type:: Correction Notice

Retraction of 'Nuclear CaMKII enhances histone H3 phosphorylation and remodels chromatin during cardiac hypertrophy'.

Published in:: 2023
Publication type:: Correction Notice

Molecular basis of stepwise cyclic tetra-adenylate cleavage by the type III CRISPR ring nuclease Crn1/Sso2081.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2485, doi. 10.1093/nar/gkad101

By:

Du, Liyang;
Zhang, Danping;
Luo, Zhipu;
Lin, Zhonghui

Publication type:

Article

Elucidating the distinct contributions of miR-122 in the HCV life cycle reveals insights into virion assembly.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2447, doi. 10.1093/nar/gkad094

By:

Rheault, Marylin;
Cousineau, Sophie E;
Fox, Danielle R;
Abram, Quinn H;
Sagan, Selena M

Publication type:

Article

A shared 'vulnerability code' underpins varying sources of DNA damage throughout paternal germline transmission in mouse.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2319, doi. 10.1093/nar/gkad089

By:

Burden, Frances;
Ellis, Peter J I;
Farré, Marta

Publication type:

Article

A dual-activity topoisomerase complex promotes both transcriptional activation and repression in response to starvation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2415, doi. 10.1093/nar/gkad086

By:

Su, Shuaikun;
Xue, Yutong;
Lee, Seung Kyu;
Zhang, Yongqing;
Fan, Jinshui;
De, Supriyo;
Sharov, Alexei;
Wang, Weidong

Publication type:

Article

The importance of nuclear RAGE–Mcm2 axis in diabetes or cancer-associated replication stress.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2298, doi. 10.1093/nar/gkad085

By:

Han, Zhe;
Andrš, Martin;
Madhavan, Bindhu K;
Kaymak, Serap;
Sulaj, Alba;
Kender, Zoltan;
Kopf, Stefan;
Kihm, Lars;
Pepperkok, Rainer;
Janscak, Pavel;
Nawroth, Peter;
Kumar, Varun

Publication type:

Article

Allosteric effects of E. coli SSB and RecR proteins on RecO protein binding to DNA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2284, doi. 10.1093/nar/gkad084

By:

Shinn, Min Kyung;
Chaturvedi, Sumit K;
Kozlov, Alexander G;
Lohman, Timothy M

Publication type:

Article

Structure of the Caenorhabditis elegans m<sup>6</sup>A methyltransferase METT10 that regulates SAM homeostasis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2434, doi. 10.1093/nar/gkad081

By:

Ju, Jue;
Aoyama, Tomohiko;
Yashiro, Yuka;
Yamashita, Seisuke;
Kuroyanagi, Hidehito;
Tomita, Kozo

Publication type:

Article

Flanking strand separation activity of RecA nucleoprotein filaments in DNA strand exchange reactions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2270, doi. 10.1093/nar/gkad078

By:

Yu, Fangzhi;
Zhang, Dapeng;
Zhao, Chubin;
Zhao, Qiang;
Jiang, Guibin;
Wang, Hailin

Publication type:

Article

DNA polymerase θ-mediated repair of high LET radiation-induced complex DNA double-strand breaks.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2257, doi. 10.1093/nar/gkad076

By:

Yi, Geunil;
Sung, Yubin;
Kim, Chanwoo;
Ra, Jae Sun;
Hirakawa, Hirokazu;
Kato, Takamitsu A;
Fujimori, Akira;
Kim, Hajin;
Takata, Kei-ichi

Publication type:

Article

HDGFRP3 interaction with 53BP1 promotes DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2238, doi. 10.1093/nar/gkad073

By:

Zhang, Zhen;
Samsa, William E;
De, Yanyan;
Zhang, Fan;
Reizes, Ofer;
Almasan, Alexandru;
Gong, Zihua

Publication type:

Article

Correction to 'USP37 regulates DNA damage response through stabilizing and deubiquitinating BLM'.

Published in:: 2023
Publication type:: Correction Notice

PARP1 associates with R-loops to promote their resolution and genome stability.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2215, doi. 10.1093/nar/gkad066

By:

Laspata, Natalie;
Kaur, Parminder;
Mersaoui, Sofiane Yacine;
Muoio, Daniela;
Liu, Zhiyan Silvia;
Bannister, Maxwell Henry;
Nguyen, Hai Dang;
Curry, Caroline;
Pascal, John M;
Poirier, Guy G;
Wang, Hong;
Masson, Jean-Yves;
Fouquerel, Elise

Publication type:

Article

ASC-G4, an algorithm to calculate advanced structural characteristics of G-quadruplexes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2087, doi. 10.1093/nar/gkad060

By:

Farag, Marc;
Messaoudi, Cédric;
Mouawad, Liliane

Publication type:

Article

p38-mediated FOXN3 phosphorylation modulates lung inflammation and injury through the NF-κB signaling pathway.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2195, doi. 10.1093/nar/gkad057

By:

Zhu, Xinxing;
Huang, Beijia;
Zhao, Fengting;
Lian, Jie;
He, Lixiang;
Zhang, Yangxia;
Ji, Longkai;
Zhang, Jinghang;
Yan, Xin;
Zeng, Taoling;
Ma, Chunya;
Liang, Yinming;
Zhang, Chen;
Lin, Juntang

Publication type:

Article

A riboswitch separated from its ribosome-binding site still regulates translation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2464, doi. 10.1093/nar/gkad056

By:

Schroeder, Griffin M;
Akinyemi, Olayinka;
Malik, Jeffrey;
Focht, Caroline M;
Pritchett, Elizabeth M;
Baker, Cameron D;
McSally, James P;
Jenkins, Jermaine L;
Mathews, David H;
Wedekind, Joseph E

Publication type:

Article

Epigenetic and chromosomal features drive transposon insertion in Drosophila melanogaster.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2066, doi. 10.1093/nar/gkad054

By:

Cao, Jichuan;
Yu, Tianxiong;
Xu, Bo;
Hu, Zhongren;
Zhang, Xiao-ou;
Theurkauf, William E;
Weng, Zhiping

Publication type:

Article

DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2046, doi. 10.1093/nar/gkad050

By:

Fang, Yuqi;
Ji, Zhicheng;
Zhou, Weiqiang;
Abante, Jordi;
Koldobskiy, Michael A;
Ji, Hongkai;
Feinberg, Andrew P

Publication type:

Article

LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2033, doi. 10.1093/nar/gkad049

By:

McKerrow, Wilson;
Kagermazova, Larisa;
Doudican, Nicole;
Frazzette, Nicholas;
Kaparos, Efiyenia Ismini;
Evans, Shane A;
Rocha, Azucena;
Sedivy, John M;
Neretti, Nicola;
Carucci, John;
Boeke, Jef D;
Fenyö, David

Publication type:

Article

PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2397, doi. 10.1093/nar/gkad042

By:

Chembazhi, Ullas Valiya;
Tung, Wesley S;
Hwang, Hyojeong;
Wang, Yuexi;
Lalwani, Aryan;
Nguyen, Ka Lam;
Bangru, Sushant;
Yee, Danielle;
Chin, Kristy;
Yang, Jing;
Kalsotra, Auinash;
Mei, Wenyan

Publication type:

Article

Ultradeep characterisation of translational sequence determinants refutes rare-codon hypothesis and unveils quadruplet base pairing of initiator tRNA and transcript.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2377, doi. 10.1093/nar/gkad040

By:

Höllerer, Simon;
Jeschek, Markus

Publication type:

Article

Revealing determinants of translation efficiency via whole-gene codon randomization and machine learning.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2363, doi. 10.1093/nar/gkad035

By:

Nieuwkoop, Thijs;
Terlouw, Barbara R;
Stevens, Katherine G;
Scheltema, Richard A;
de Ridder, Dick;
van der Oost, John;
Claassens, Nico J

Publication type:

Article

Species-specific regulation of XIST by the JPX/FTX orthologs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2177, doi. 10.1093/nar/gkad029

By:

Rosspopoff, Olga;
Cazottes, Emmanuel;
Huret, Christophe;
Loda, Agnese;
Collier, Amanda J;
Casanova, Miguel;
Rugg-Gunn, Peter J;
Heard, Edith;
Ouimette, Jean-François;
Rougeulle, Claire

Publication type:

Article

Key transcription factors influence the epigenetic landscape to regulate retinal cell differentiation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2151, doi. 10.1093/nar/gkad026

By:

Ge, Yichen;
Chen, Xushen;
Nan, Nan;
Bard, Jonathan;
Wu, Fuguo;
Yergeau, Donald;
Liu, Tao;
Wang, Jie;
Mu, Xiuqian

Publication type:

Article

An intellectual disability-related MED23 mutation dysregulates gene expression by altering chromatin conformation and enhancer activities.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2137, doi. 10.1093/nar/gkad025

By:

Yang, Yenan;
Li, Chonghui;
Chen, Ziyin;
Zhang, Yiyang;
Tian, Qing;
Sun, Meiling;
Zhang, Shuai;
Yu, Miao;
Wang, Gang

Publication type:

Article

Characterization of an atypical but widespread type IV secretion system for transfer of the integrative and conjugative element (ICEclc) in Pseudomonas putida.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2345, doi. 10.1093/nar/gkad024

By:

Daveri, Andrea;
Benigno, Valentina;
van der Meer, Jan Roelof

Publication type:

Article

The impact of nucleosome structure on CRISPR/Cas9 fidelity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2333, doi. 10.1093/nar/gkad021

By:

Handelmann, Christopher R;
Tsompana, Maria;
Samudrala, Ram;
Buck, Michael J

Publication type:

Article

Trans-cis isomerization kinetics of cyanine dyes reports on the folding states of exogeneous RNA G-quadruplexes in live cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. e27, doi. 10.1093/nar/gkac1255

By:

Kitamura, Akira;
Tornmalm, Johan;
Demirbay, Baris;
Piguet, Joachim;
Kinjo, Masataka;
Widengren, Jerker

Publication type:

Article

Conservation of transcriptional regulation by BRCA1 and BARD1 in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2108, doi. 10.1093/nar/gkac877

By:

Thapa, Ishor;
Vahrenkamp, Russell;
Witus, Samuel R;
Lightle, Caitlin;
Falkenberg, Owen;
Sellin Jeffries, Marlo K;
Klevit, Rachel E;
Stewart, Mikaela D

Publication type:

Article

A method to enrich polypeptidyl-tRNAs to capture snapshots of translation in the cell.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. e30, doi. 10.1093/nar/gkac1276

By:

Yamakawa, Ayako;
Niwa, Tatsuya;
Chadani, Yuhei;
Kobo, Akinao;
Taguchi, Hideki

Publication type:

Article

MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. e29, doi. 10.1093/nar/gkac1260

By:

Wen, Wei Xiong;
Mead, Adam J;
Thongjuea, Supat

Publication type:

Article

Controlling therapeutic protein expression via inhalation of a butter flavor molecule.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. e28, doi. 10.1093/nar/gkac1256

By:

Bertschi, Adrian;
Stefanov, Bozhidar-Adrian;
Xue, Shuai;
Charpin-El Hamri, Ghislaine;
Teixeira, Ana Palma;
Fussenegger, Martin

Publication type:

Article

Structure and functional determinants of Rad6–Bre1 subunits in the histone H2B ubiquitin-conjugating complex.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2117, doi. 10.1093/nar/gkad012

By:

Shukla, Prakash K;
Bissell, Jesse E;
Kumar, Sanjit;
Pokhrel, Srijana;
Palani, Sowmiya;
Radmall, Kaitlin S;
Obidi, Onyeka;
Parnell, Timothy J;
Brasch, Julia;
Shrieve, Dennis C;
Chandrasekharan, Mahesh B

Publication type:

Article

Detection of unintended on-target effects in CRISPR genome editing by DNA donors carrying diagnostic substitutions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. e26, doi. 10.1093/nar/gkac1254

By:

Lackner, Martin;
Helmbrecht, Nelly;
Pääbo, Svante;
Riesenberg, Stephan

Publication type:

Article

HybridRNAbind: prediction of RNA interacting residues across structure-annotated and disorder-annotated proteins.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. e25, doi. 10.1093/nar/gkac1253

By:

Zhang, Fuhao;
Li, Min;
Zhang, Jian;
Kurgan, Lukasz

Publication type:

Article

Cryo-EM structure of the fully assembled Elongator complex.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2011, doi. 10.1093/nar/gkac1232

By:

Jaciuk, Marcin;
Scherf, David;
Kaszuba, Karol;
Gaik, Monika;
Rau, Alexander;
Kościelniak, Anna;
Krutyhołowa, Rościsław;
Rawski, Michał;
Indyka, Paulina;
Graziadei, Andrea;
Chramiec-Głąbik, Andrzej;
Biela, Anna;
Dobosz, Dominika;
Lin, Ting-Yu;
Abbassi, Nour-el-Hana;
Hammermeister, Alexander;
Rappsilber, Juri;
Kosinski, Jan;
Schaffrath, Raffael;
Glatt, Sebastian

Publication type:

Article

A standalone editing protein deacylates mischarged canavanyl-tRNA<sup>Arg</sup> to prevent canavanine incorporation into proteins.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 5, p. 2001, doi. 10.1093/nar/gkac1197

By:

Hauth, Franziskus;
Funck, Dietmar;
Hartig, Jörg S

Publication type:

Article