Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 3

Results: 37

Correction to 'Mutagenesis of the DNA binding residues in bovine pancreatic DNase1: an investigation into the mechanism of sequence discrimination by a sequence selective nuclease'.

Published in:: 2023
Publication type:: Correction Notice

Identification of RNA helicases with unwinding activity on angiogenin-processed tRNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1326, doi. 10.1093/nar/gkad033

By:

Drino, Aleksej;
König, Lisa;
Capitanchik, Charlotte;
Sanadgol, Nasim;
Janisiw, Eva;
Rappol, Tom;
Vilardo, Elisa;
Schaefer, Matthias R

Publication type:

Article

The enterohemorrhagic Escherichia coli insertion sequence-excision enhancer protein is a DNA polymerase with microhomology-mediated end-joining activity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1189, doi. 10.1093/nar/gkad017

By:

Calvo, Patricia A;
Mateo-Cáceres, Víctor;
Díaz-Arco, Silvia;
Redrejo-Rodríguez, Modesto;
de Vega, Miguel

Publication type:

Article

Unexpected moves: a conformational change in MutSα enables high-affinity DNA mismatch binding.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1173, doi. 10.1093/nar/gkad015

By:

Bruekner, Susanne R;
Pieters, Wietske;
Fish, Alexander;
Liaci, A Manuel;
Scheffers, Serge;
Rayner, Emily;
Kaldenbach, Daphne;
Drost, Lisa;
Dekker, Marleen;
van Hees-Stuivenberg, Sandrine;
Delzenne-Goette, Elly;
de Konink, Charlotte;
Houlleberghs, Hellen;
Dubbink, Hendrikus Jan;
AlSaegh, Abeer;
de Wind, Niels;
Förster, Friedrich;
te Riele, Hein;
Sixma, Titia K

Publication type:

Article

Phosphorylation of TRF2 promotes its interaction with TIN2 and regulates DNA damage response at telomeres.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1154, doi. 10.1093/nar/gkac1269

By:

Storchova, Radka;
Palek, Matous;
Palkova, Natalie;
Veverka, Pavel;
Brom, Tomas;
Hofr, Ctirad;
Macurek, Libor

Publication type:

Article

Parallelized gene cluster editing illuminates mechanisms of epoxyketone proteasome inhibitor biosynthesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1488, doi. 10.1093/nar/gkad009

By:

Huang, Chuan;
Zabala, Daniel;
de los Santos, Emmanuel L C;
Song, Lijiang;
Corre, Christophe;
Alkhalaf, Lona M;
Challis, Gregory L

Publication type:

Article

Structures of annexin A2-PS DNA complexes show dominance of hydrophobic interactions in phosphorothioate binding.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1409, doi. 10.1093/nar/gkac774

By:

Hyjek-Składanowska, Malwina;
Anderson, Brooke A;
Mykhaylyk, Vitaliy;
Orr, Christian;
Wagner, Armin;
Poznański, Jarosław T;
Skowronek, Krzysztof;
Seth, Punit;
Nowotny, Marcin

Publication type:

Article

Structural basis for topological regulation of Tn3 resolvase.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1001, doi. 10.1093/nar/gkac733

By:

Montaño, Sherwin P;
Rowland, Sally-J;
Fuller, James R;
Burke, Mary E;
MacDonald, Alasdair I;
Boocock, Martin R;
Stark, W Marshall;
Rice, Phoebe A

Publication type:

Article

Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1458, doi. 10.1093/nar/gkac1271

By:

Machón, Cristina;
Ruiz-Masó, José A;
Amodio, Juliana;
Boer, D Roeland;
Bordanaba-Ruiseco, Lorena;
Bury, Katarzyna;
Konieczny, Igor;
del Solar, Gloria;
Coll, Miquel

Publication type:

Article

CRISPR-associated type V proteins as a tool for controlling mRNA stability in S. cerevisiae synthetic gene circuits.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1473, doi. 10.1093/nar/gkac1270

By:

Yu, Lifang;
Marchisio, Mario Andrea

Publication type:

Article

A bio-orthogonal linear ubiquitin probe identifies STAT3 as a direct substrate of OTULIN in glioblastoma.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1050, doi. 10.1093/nar/gkad002

By:

Du, Xianli;
Pang, Jing;
Gu, Bin;
Si, Tian;
Chang, Yan;
Li, Tianqi;
Wu, Min;
Wang, Zicheng;
Wang, Yuxia;
Feng, Jiannan;
Wu, Ning;
Man, Jianghong;
Li, Huiyan;
Li, Ailing;
Zhang, Tong;
Wang, Bo;
Duan, Xiaotao

Publication type:

Article

Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1317, doi. 10.1093/nar/gkac1268

By:

Zhang, Xiaojing;
Li, Shanshan;
Pintilie, Grigore;
Palo, Michael Z;
Zhang, Kaiming

Publication type:

Article

The nucleosome unwrapping free energy landscape defines distinct regions of transcription factor accessibility and kinetics.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1139, doi. 10.1093/nar/gkac1267

By:

Donovan, Benjamin T;
Luo, Yi;
Meng, Zhiyuan;
Poirier, Michael G

Publication type:

Article

The homeodomain of Oct4 is a dimeric binder of methylated CpG elements.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1120, doi. 10.1093/nar/gkac1262

By:

Tan, Daisylyn Senna;
Cheung, Shun Lai;
Gao, Ya;
Weinbuch, Maike;
Hu, Haoqing;
Shi, Liyang;
Ti, Shih-Chieh;
Hutchins, Andrew P;
Cojocaru, Vlad;
Jauch, Ralf

Publication type:

Article

Structures of human TR4<sub>LBD</sub>–JAZF1 and TR4<sub>DBD</sub>–DNA complexes reveal the molecular basis of transcriptional regulation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1443, doi. 10.1093/nar/gkac1259

By:

Liu, Yunlong;
Ma, Lulu;
Li, Min;
Tian, Zizi;
Yang, Meiting;
Wu, Xi;
Wang, Xue;
Shang, Guohui;
Xie, Mengjia;
Chen, Yiyun;
Liu, Xin;
Jiang, Lun;
Wu, Wei;
Xu, Chaoqun;
Xia, Liqun;
Li, Gonghui;
Dai, Shaodong;
Chen, Zhongzhou

Publication type:

Article

The formation of HuR/YB1 complex is required for the stabilization of target mRNA to promote myogenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1375, doi. 10.1093/nar/gkac1245

By:

Sánchez, Brenda Janice;
Mubaid, Souad;
Busque, Sandrine;
de los Santos, Yossef Lopez;
Ashour, Kholoud;
Sadek, Jason;
Lian, Xian Jin;
Khattak, Shahryar;
Di Marco, Sergio;
Gallouzi, Imed-Eddine

Publication type:

Article

The hnRNP C tetramer binds to CBC on mRNA and impedes PHAX recruitment for the classification of RNA polymerase II transcripts.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1393, doi. 10.1093/nar/gkac1250

By:

Dantsuji, Sayaka;
Ohno, Mutsuhito;
Taniguchi, Ichiro

Publication type:

Article

Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1424, doi. 10.1093/nar/gkac1249

By:

Williams, Harry M;
Thorkelsson, Sigurdur R;
Vogel, Dominik;
Milewski, Morlin;
Busch, Carola;
Cusack, Stephen;
Grünewald, Kay;
Quemin, Emmanuelle R J;
Rosenthal, Maria

Publication type:

Article

Annotation of uORFs in the OMIM genes allows to reveal pathogenic variants in 5′UTRs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1229, doi. 10.1093/nar/gkac1247

By:

Filatova, Alexandra;
Reveguk, Ivan;
Piatkova, Maria;
Bessonova, Daria;
Kuziakova, Olga;
Demakova, Victoria;
Romanishin, Alexander;
Fishman, Veniamin;
Imanmalik, Yerzhan;
Chekanov, Nikolay;
Skitchenko, Rostislav;
Barbitoff, Yury;
Kardymon, Olga;
Skoblov, Mikhail

Publication type:

Article

Structural snapshots of base excision by the cancer-associated variant MutY N146S reveal a retaining mechanism.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1034, doi. 10.1093/nar/gkac1246

By:

Demir, Merve;
Russelburg, L Peyton;
Lin, Wen-Jen;
Trasviña-Arenas, Carlos H;
Huang, Beili;
Yuen, Philip K;
Horvath, Martin P;
David, Sheila S

Publication type:

Article

Hypothesis-driven probabilistic modelling enables a principled perspective of genomic compartments.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1103, doi. 10.1093/nar/gkac1258

By:

Kariti, Hagai;
Feld, Tal;
Kaplan, Noam

Publication type:

Article

Graded impact of obstacle size on scanning by RNase E.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1364, doi. 10.1093/nar/gkac1242

By:

Richards, Jamie;
Belasco, Joel G

Publication type:

Article

8-Oxoguanine targeted by 8-oxoguanine DNA glycosylase 1 (OGG1) is central to fibrogenic gene activation upon lung injury.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1087, doi. 10.1093/nar/gkac1241

By:

Pan, Lang;
Hao, Wenjing;
Xue, Yaoyao;
Wang, Ke;
Zheng, Xu;
Luo, Jixian;
Ba, Xueqing;
Xiang, Yang;
Qin, Xiaoqun;
Bergwik, Jesper;
Tanner, Lloyd;
Egesten, Arne;
Brasier, Allan R;
Boldogh, Istvan

Publication type:

Article

Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1297, doi. 10.1093/nar/gkac1237

By:

Molitor, Lena;
Klostermann, Melina;
Bacher, Sabrina;
Merl-Pham, Juliane;
Spranger, Nadine;
Burczyk, Sandra;
Ketteler, Carolin;
Rusha, Ejona;
Tews, Daniel;
Pertek, Anna;
Proske, Marcel;
Busch, Anke;
Reschke, Sarah;
Feederle, Regina;
Hauck, Stefanie M;
Blum, Helmut;
Drukker, Micha;
Fischer-Posovszky, Pamela;
König, Julian;
Zarnack, Kathi

Publication type:

Article

ONECUT2 regulates RANKL-dependent enterocyte and microfold cell differentiation in the small intestine; a multi-omics study.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1277, doi. 10.1093/nar/gkac1236

By:

Luna Velez, Maria V;
Neikes, Hannah K;
Snabel, Rebecca R;
Quint, Yarah;
Qian, Chen;
Martens, Aniek;
Veenstra, Gert Jan C;
Freeman, Michael R;
van Heeringen, Simon J;
Vermeulen, Michiel

Publication type:

Article

The recognition mode between hsRBFA and mitoribosome 12S rRNA during mitoribosomal biogenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1353, doi. 10.1093/nar/gkac1234

By:

Zhou, Wanwan;
Liu, Xiaodan;
Lv, Mengqi;
Shi, Yunyu;
Zhang, Liang

Publication type:

Article

Antagonistic action of GPS2 and KDM1A at enhancers governs alternative macrophage activation by interleukin 4.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1067, doi. 10.1093/nar/gkac1230

By:

Huang, Zhiqiang;
Efthymiadou, Astradeni;
Liang, Ning;
Fan, Rongrong;
Treuter, Eckardt

Publication type:

Article

DPC29 promotes post-initiation mitochondrial translation in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1260, doi. 10.1093/nar/gkac1229

By:

Hubble, Kyle A;
Henry, Michael F

Publication type:

Article

Genome-wide mapping of fluoroquinolone-stabilized DNA gyrase cleavage sites displays drug specific effects that correlate with bacterial persistence.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1208, doi. 10.1093/nar/gkac1223

By:

Tang, Juechun;
Brynildsen, Mark P

Publication type:

Article

Alternative splicing mediates the compensatory upregulation of MBNL2 upon MBNL1 loss-of-function.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1245, doi. 10.1093/nar/gkac1219

By:

Nitschke, Larissa;
Hu, Rong-Chi;
Miller, Andrew N;
Lucas, Lathan;
Cooper, Thomas A

Publication type:

Article

Optimized high-throughput screening of non-coding variants identified from genome-wide association studies.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e18, doi. 10.1093/nar/gkac1198

By:

Morova, Tunc;
Ding, Yi;
Huang, Chia-Chi F;
Sar, Funda;
Schwarz, Tommer;
Giambartolomei, Claudia;
Baca, Sylvan C;
Grishin, Dennis;
Hach, Faraz;
Gusev, Alexander;
Freedman, Matthew L;
Pasaniuc, Bogdan;
Lack, Nathan A

Publication type:

Article

Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e17, doi. 10.1093/nar/gkac1185

By:

Hernandez-Alias, Xavier;
Katanski, Christopher D;
Zhang, Wen;
Assari, Mahdi;
Watkins, Christopher P;
Schaefer, Martin H;
Serrano, Luis;
Pan, Tao

Publication type:

Article

CoLoC-seq probes the global topology of organelle transcriptomes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e16, doi. 10.1093/nar/gkac1183

By:

Jeandard, Damien;
Smirnova, Anna;
Fasemore, Akinyemi Mandela;
Coudray, Léna;
Entelis, Nina;
Förstner, Konrad U;
Tarassov, Ivan;
Smirnov, Alexandre

Publication type:

Article

DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e15, doi. 10.1093/nar/gkac1157

By:

Shutta, Katherine H;
Weighill, Deborah;
Burkholz, Rebekka;
Guebila, Marouen Ben;
DeMeo, Dawn L;
Zacharias, Helena U;
Quackenbush, John;
Altenbuchinger, Michael

Publication type:

Article

Efficient single copy integration via homology-directed repair (scHDR) by 5′modification of large DNA donor fragments in mice.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e14, doi. 10.1093/nar/gkac1150

By:

Medert, Rebekka;
Thumberger, Thomas;
Tavhelidse-Suck, Tinatini;
Hub, Tobias;
Kellner, Tanja;
Oguchi, Yoko;
Dlugosz, Sascha;
Zimmermann, Frank;
Wittbrodt, Joachim;
Freichel, Marc

Publication type:

Article

Hierarchical DNA branch assembly-encoded fluorescent nanoladders for single-cell transcripts imaging.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e13, doi. 10.1093/nar/gkac1138

By:

Cao, Xiaowen;
Chen, Feng;
Xue, Jing;
Zhao, Yue;
Bai, Min;
Zhao, Yongxi

Publication type:

Article

A scanning-to-incision switch in TFIIH-XPG induced by DNA damage licenses nucleotide excision repair.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. 1019, doi. 10.1093/nar/gkac1095

By:

Bralić, Amer;
Tehseen, Muhammad;
Sobhy, Mohamed A;
Tsai, Chi-Lin;
Alhudhali, Lubna;
Yi, Gang;
Yu, Jina;
Yan, Chunli;
Ivanov, Ivaylo;
Tsutakawa, Susan E;
Tainer, John A;
Hamdan, Samir M

Publication type:

Article