Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 21

Results: 41

LSM14B is essential for oocyte meiotic maturation by regulating maternal mRNA storage and clearance.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11652, doi. 10.1093/nar/gkad919

By:

Wan, Yanling;
Yang, Shuang;
Li, Tongtong;
Cai, Yuling;
Wu, Xinyue;
Zhang, Mingyu;
Muhammad, Tahir;
Huang, Tao;
Lv, Yue;
Chan, Wai-Yee;
Lu, Gang;
Li, Jingxin;
Sha, Qian-Qian;
Chen, Zi-Jiang;
Liu, Hongbin

Publication type:

Article

High-throughput data and modeling reveal insights into the mechanisms of cooperative DNA-binding by transcription factor proteins.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11600, doi. 10.1093/nar/gkad872

By:

Martin, Vincentius;
Zhuang, Farica;
Zhang, Yuning;
Pinheiro, Kyle;
Gordân, Raluca

Publication type:

Article

BRD9-mediated control of the TGF-β/Activin/Nodal pathway regulates self-renewal and differentiation of human embryonic stem cells and progression of cancer cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11634, doi. 10.1093/nar/gkad907

By:

Wang, Xuepeng;
Song, Chengcheng;
Ye, Ying;
Gu, Yashi;
Li, Xuemei;
Chen, Peixin;
Leng, Dongliang;
Xiao, Jing;
Wu, Hao;
Xie, Sisi;
Liu, Weiwei;
Zhao, Qi;
Chen, Di;
Chen, Xi;
Wu, Qiang;
Chen, Guokai;
Zhang, Wensheng

Publication type:

Article

Genome-wide direct quantification of in vivo mutagenesis using high-accuracy paired-end and complementary consensus sequencing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. e109, doi. 10.1093/nar/gkad909

By:

You, Xinyue;
Cao, Yiyi;
Suzuki, Takayoshi;
Shao, Jie;
Zhu, Benzhan;
Masumura, Kenichi;
Xi, Jing;
Liu, Weiying;
Zhang, Xinyu;
Luan, Yang

Publication type:

Article

GSE1 links the HDAC1/CoREST co-repressor complex to DNA damage.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11748, doi. 10.1093/nar/gkad911

By:

Vcelkova, Terezia;
Reiter, Wolfgang;
Zylka, Martha;
Hollenstein, David M;
Schuckert, Stefan;
Hartl, Markus;
Seiser, Christian

Publication type:

Article

Correction to 'Four additional natural 7-deazaguanine derivatives in phages and how to make them'.

Published in:: 2023
Publication type:: Correction Notice

Structural and functional investigation of GajB protein in Gabija anti-phage defense.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11941, doi. 10.1093/nar/gkad951

By:

Oh, Hyejin;
Koo, Jasung;
An, So Young;
Hong, Sung-Hyun;
Suh, Jeong-Yong;
Bae, Euiyoung

Publication type:

Article

Design and deep learning of synthetic B-cell-specific promoters.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11967, doi. 10.1093/nar/gkad930

By:

Fu, Zong-Heng;
He, Si-Zhe;
Wu, Yi;
Zhao, Guang-Rong

Publication type:

Article

A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. e110, doi. 10.1093/nar/gkad929

By:

Wang, Yunxia;
Pan, Ziqi;
Mou, Minjie;
Xia, Weiqi;
Zhang, Hongning;
Zhang, Hanyu;
Liu, Jin;
Zheng, Lingyan;
Luo, Yongchao;
Zheng, Hanqi;
Yu, Xinyuan;
Lian, Xichen;
Zeng, Zhenyu;
Li, Zhaorong;
Zhang, Bing;
Zheng, Mingyue;
Li, Honglin;
Hou, Tingjun;
Zhu, Feng

Publication type:

Article

Selective targeting of parallel G-quadruplex structure using L-RNA aptamer.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11439, doi. 10.1093/nar/gkad900

By:

Ji, Danyang;
Yuan, Jia-Hao;
Chen, Shuo-Bin;
Tan, Jia-Heng;
Kwok, Chun Kit

Publication type:

Article

Long non-coding RNA generated from CDKN1A gene by alternative polyadenylation regulates p21 expression during DNA damage response.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11911, doi. 10.1093/nar/gkad899

By:

Murphy, Michael R;
Ramadei, Anthony;
Doymaz, Ahmet;
Varriano, Sophia;
Natelson, Devorah M;
Yu, Amy;
Aktas, Sera;
Mazzeo, Marie;
Mazzeo, Michael;
Zakusilo, George;
Kleiman, Frida E

Publication type:

Article

Molecular insight into the specific enzymatic properties of TREX1 revealing the diverse functions in processing RNA and DNA/RNA hybrids.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11927, doi. 10.1093/nar/gkad910

By:

Huang, Kuan-Wei;
Wu, Chia-Yun;
Toh, Shu-Ing;
Liu, Tung-Chang;
Tu, Chun-I;
Lin, Yin-Hsin;
Cheng, An-Ju;
Kao, Ya-Ting;
Chu, Jhih-Wei;
Hsiao, Yu-Yuan

Publication type:

Article

Superanionic DNA: enzymatic synthesis of hypermodified DNA bearing four different anionic substituents at all four nucleobases.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11428, doi. 10.1093/nar/gkad893

By:

Kuprikova, Natalia;
Ondruš, Marek;
Bednárová, Lucie;
Riopedre-Fernandez, Miguel;
Slavětínská, Lenka Poštová;
Sýkorová, Veronika;
Hocek, Michal

Publication type:

Article

DNA elements tether canonical Polycomb Repressive Complex 1 to human genes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11613, doi. 10.1093/nar/gkad889

By:

Barrasa, Juan I;
Kahn, Tatyana G;
Lundkvist, Moa J;
Schwartz, Yuri B

Publication type:

Article

Functionally comparable but evolutionarily distinct nucleotide-targeting effectors help identify conserved paradigms across diverse immune systems.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11479, doi. 10.1093/nar/gkad879

By:

Nicastro, Gianlucca G;
Burroughs, A Maxwell;
Iyer, Lakshminarayan M;
Aravind, L

Publication type:

Article

Structural and functional basis of inositol hexaphosphate stimulation of NHEJ through stabilization of Ku-XLF interaction.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11732, doi. 10.1093/nar/gkad863

By:

Kefala Stavridi, Antonia;
Gontier, Amandine;
Morin, Vincent;
Frit, Philippe;
Ropars, Virginie;
Barboule, Nadia;
Racca, Carine;
Jonchhe, Sagun;
Morten, Michael J;
Andreani, Jessica;
Rak, Alexey;
Legrand, Pierre;
Bourand-Plantefol, Alexa;
Hardwick, Steven W;
Chirgadze, Dimitri Y;
Davey, Paul;
De Oliveira, Taiana Maia;
Rothenberg, Eli;
Britton, Sebastien;
Calsou, Patrick

Publication type:

Article

Shortcut barcoding and early pooling for scalable multiplex single-cell reduced-representation CpG methylation sequencing at single nucleotide resolution.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. e108, doi. 10.1093/nar/gkad892

By:

Mai, Liyao;
Wen, Zebin;
Zhang, Yulong;
Gao, Yu;
Lin, Guanchuan;
Lian, Zhiwei;
Yang, Xiang;
Zhou, Jingjing;
Lin, Xianwei;
Luo, Chaochao;
Peng, Wanwan;
Chen, Caiming;
Peng, Jiajia;
Liu, Duolian;
Marjani, Sadie L;
Tao, Qian;
Cui, Yongping;
Zhang, Junxiao;
Wu, Xuedong;
Weissman, Sherman M

Publication type:

Article

mtFociCounter for automated single-cell mitochondrial nucleoid quantification and reproducible foci analysis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. e107, doi. 10.1093/nar/gkad864

By:

Rey, Timo;
Tábara, Luis Carlos;
Prudent, Julien;
Minczuk, Michal

Publication type:

Article

Hypoxia-induced transcriptional stress is mediated by ROS-induced R-loops.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11584, doi. 10.1093/nar/gkad858

By:

Ma, Tiffany S;
Worth, Katja R;
Maher, Conor;
Ng, Natalie;
Beghè, Chiara;
Gromak, Natalia;
Rose, Anna M;
Hammond, Ester M

Publication type:

Article

Dynamic ParB–DNA interactions initiate and maintain a partition condensate for bacterial chromosome segregation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11856, doi. 10.1093/nar/gkad868

By:

Tišma, Miloš;
Janissen, Richard;
Antar, Hammam;
Martin-Gonzalez, Alejandro;
Barth, Roman;
Beekman, Twan;
van der Torre, Jaco;
Michieletto, Davide;
Gruber, Stephan;
Dekker, Cees

Publication type:

Article

Comparison of cell response to chromatin and DNA damage.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11836, doi. 10.1093/nar/gkad865

By:

Luzhin, Artyom;
Rajan, Priyanka;
Safina, Alfiya;
Leonova, Katerina;
Stablewski, Aimee;
Wang, Jianmin;
Robinson, Denisha;
Isaeva, Natalia;
Kantidze, Omar;
Gurova, Katerina

Publication type:

Article

'SAXS-osmometer' method provides measurement of DNA pressure in viral capsids and delivers an empirical equation of state.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11415, doi. 10.1093/nar/gkad852

By:

Villanueva Valencia, José Ramón;
Li, Dong;
Casjens, Sherwood R;
Evilevitch, Alex

Publication type:

Article

Rad53 regulates the lifetime of Rdh54 at homologous recombination intermediates.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11688, doi. 10.1093/nar/gkad848

By:

Hu, Jingyi;
Ferlez, Bryan;
Dau, Jennifer;
Crickard, J Brooks

Publication type:

Article

Design of a sorbitol-activated nitrogen metabolism-dependent regulatory system for redirection of carbon metabolism flow in Bacillus licheniformis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11952, doi. 10.1093/nar/gkad859

By:

He, Hehe;
Li, Youran;
Ma, Xufan;
Xu, Sha;
Zhang, Liang;
Ding, Zhongyang;
Shi, Guiyang

Publication type:

Article

RAD51 paralogs synergize with RAD51 to protect reversed forks from cellular nucleases.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11717, doi. 10.1093/nar/gkad856

By:

Guh, Chia-Lun;
Lei, Kai-Hang;
Chen, Yi-An;
Jiang, Yi-Zhen;
Chang, Hao-Yen;
Liaw, Hungjiun;
Li, Hung-Wen;
Yen, Hsin-Yung;
Chi, Peter

Publication type:

Article

RNA sequestration driven by amyloid formation: the alpha synuclein case.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11466, doi. 10.1093/nar/gkad857

By:

Rupert, Jakob;
Monti, Michele;
Zacco, Elsa;
Tartaglia, Gian Gaetano

Publication type:

Article

Sea-ATI unravels novel vocabularies of plant active cistrome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11568, doi. 10.1093/nar/gkad853

By:

Wen, Chenjin;
Yuan, Zhen;
Zhang, Xiaotian;
Chen, Hao;
Luo, Lin;
Li, Wanying;
Li, Tian;
Ma, Nana;
Mao, Fei;
Lin, Dongmei;
Lin, Zhanxi;
Lin, Chentao;
Xu, Tongda;
Lü, Peitao;
Lin, Juncheng;
Zhu, Fangjie

Publication type:

Article

The SAP domain of Ku facilitates its efficient loading onto DNA ends.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11706, doi. 10.1093/nar/gkad850

By:

Fulneček, Jaroslav;
Klimentová, Eva;
Cairo, Albert;
Bukovcakova, Sona Valuchova;
Alexiou, Panagiotis;
Prokop, Zbynek;
Riha, Karel

Publication type:

Article

Two mitochondrial HMG-box proteins, Cim1 and Abf2, antagonistically regulate mtDNA copy number in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11813, doi. 10.1093/nar/gkad849

By:

Schrott, Simon;
Osman, Christof

Publication type:

Article

The N-terminus of Spt16 anchors FACT to MCM2–7 for parental histone recycling.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11549, doi. 10.1093/nar/gkad846

By:

Wang, Xuezheng;
Tang, Yuantao;
Xu, Jiawei;
Leng, He;
Shi, Guojun;
Hu, Zaifeng;
Wu, Jiale;
Xiu, Yuwen;
Feng, Jianxun;
Li, Qing

Publication type:

Article

BOLA3 and NFU1 link mitoribosome iron–sulfur cluster assembly to multiple mitochondrial dysfunctions syndrome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11797, doi. 10.1093/nar/gkad842

By:

Zhong, Hui;
Janer, Alexandre;
Khalimonchuk, Oleh;
Antonicka, Hana;
Shoubridge, Eric A;
Barrientos, Antoni

Publication type:

Article

ADAR1 links R-loop homeostasis to ATR activation in replication stress response.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11668, doi. 10.1093/nar/gkad839

By:

Zhang, Biao;
Li, Yi;
Zhang, Jieyou;
Wang, Yuejiao;
Liang, Can;
Lu, Ting;
Zhang, Chunyong;
Liu, Ling;
Qin, Yan;
He, Jiahuan;
Zhao, Xiangnan;
Yu, Jia;
Hao, Jihui;
Yang, Jie;
Li, Mulin Jun;
Yao, Zhi;
Ma, Shuai;
Cheng, Hui;
Cheng, Tao;
Shi, Lei

Publication type:

Article

Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. e106, doi. 10.1093/nar/gkad843

By:

Zhao, Yixin;
Liu, Lingjie;
Hassett, Rebecca;
Siepel, Adam

Publication type:

Article

Low RNA stability signifies strong expression regulatability of tumor suppressors.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11534, doi. 10.1093/nar/gkad838

By:

Gao, Xinlei;
Yi, Yang;
Lv, Jie;
Li, Yanqiang;
Arulsamy, Kulandaisamy;
Babu, Sahana Suresh;
Bruno, Ivone;
Zhang, Lili;
Cao, Qi;
Chen, Kaifu

Publication type:

Article

A conserved isoleucine in the binding pocket of RIG-I controls immune tolerance to mitochondrial RNA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11893, doi. 10.1093/nar/gkad835

By:

de Regt, Ann Kristin;
Anand, Kanchan;
Ciupka, Katrin;
Bender, Felix;
Gatterdam, Karl;
Putschli, Bastian;
Fusshöller, David;
Hilbig, Daniel;
Kirchhoff, Alexander;
Hunkler, Charlotte;
Wolter, Steven;
Grünewald, Agathe;
Wallerath, Christina;
Schuberth-Wagner, Christine;
Ludwig, Janos;
Paeschke, Katrin;
Bartok, Eva;
Hagelueken, Gregor;
Hartmann, Gunther;
Zillinger, Thomas

Publication type:

Article

Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11876, doi. 10.1093/nar/gkad827

By:

Siodmak, Anna;
Martinez-Seidel, Federico;
Rayapuram, Naganand;
Bazin, Jeremie;
Alhoraibi, Hanna;
Gentry-Torfer, Dione;
Tabassum, Naheed;
Sheikh, Arsheed H;
Kise, José Kenyi González;
Blilou, Ikram;
Crespi, Martin;
Kopka, Joachim;
Hirt, Heribert

Publication type:

Article

Different elongation factors distinctly modulate RNA polymerase II transcription in Arabidopsis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11518, doi. 10.1093/nar/gkad825

By:

Obermeyer, Simon;
Schrettenbrunner, Lukas;
Stöckl, Richard;
Schwartz, Uwe;
Grasser, Klaus D

Publication type:

Article

The landscape of human SVA retrotransposons.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11453, doi. 10.1093/nar/gkad821

By:

Chu, Chong;
Lin, Eric W;
Tran, Antuan;
Jin, Hu;
Ho, Natalie I;
Veit, Alexander;
Cortes-Ciriano, Isidro;
Burns, Kathleen H;
Ting, David T;
Park, Peter J

Publication type:

Article

A high-resolution haplotype-resolved Reference panel constructed from the China Kadoorie Biobank Study.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11770, doi. 10.1093/nar/gkad779

By:

Yu, Canqing;
Lan, Xianmei;
Tao, Ye;
Guo, Yu;
Sun, Dianjianyi;
Qian, Puyi;
Zhou, Yuwen;
Walters, Robin G;
Li, Linxuan;
Zhu, Yunqing;
Zeng, Jingyu;
Millwood, Iona Y;
Guo, Ruidong;
Pei, Pei;
Yang, Tao;
Du, Huaidong;
Yang, Fan;
Yang, Ling;
Ren, Fangyi;
Chen, Yiping

Publication type:

Article

An archaeal virus-encoded anti-CRISPR protein inhibits type III-B immunity by inhibiting Cas RNP complex turnover.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11783, doi. 10.1093/nar/gkad804

By:

Liu, Jilin;
Li, Qian;
Wang, Xiaojie;
Liu, Zhenzhen;
Ye, Qing;
Liu, Tao;
Pan, Saifu;
Peng, Nan

Publication type:

Article

StORF-Reporter: finding genes between genes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 21, p. 11504, doi. 10.1093/nar/gkad814

By:

Dimonaco, Nicholas J;
Clare, Amanda;
Kenobi, Kim;
Aubrey, Wayne;
Creevey, Christopher J

Publication type:

Article