Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 20

Results: 48

Correction to 'Chromatin accessibility-based characterisation of brain gene regulatory networks in three distinct honey bee polyphenisms'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'Stabilization of XIAP mRNA through the RNA binding protein HuR regulated by cellular polyamines'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'ID3 promotes homologous recombination via non-transcriptional and transcriptional mechanisms and its loss confers sensitivity to PARP inhibition'.

Published in:: 2023
Publication type:: Correction Notice

Correction to 'MiR-145 directly targets p70S6K1 in cancer cells to inhibit tumor growth and angiogenesis'.

Published in:: 2023
Publication type:: Correction Notice

Single-molecule FRET observes opposing effects of urea and TMAO on structurally similar meso- and thermophilic riboswitch RNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11345, doi. 10.1093/nar/gkad866

By:

Hou, Qian;
Chatterjee, Surajit;
Lund, Paul E;
Suddala, Krishna C;
Walter, Nils G

Publication type:

Article

An ATP-independent role for Prp16 in promoting aberrant splicing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10815, doi. 10.1093/nar/gkad861

By:

Chung, Che-Sheng;
Wai, Hsu Lei;
Kao, Ching-Yang;
Cheng, Soo-Chen

Publication type:

Article

Engineering of cytosine base editors with DNA damage minimization and editing scope diversification.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. e105, doi. 10.1093/nar/gkad855

By:

Yuan, Bo;
Zhang, Shuqian;
Song, Liting;
Chen, Jinlong;
Cao, Jixin;
Qiu, Jiayi;
Qiu, Zilong;
Chen, Jingqi;
Zhao, Xing-Ming;
Cheng, Tian-Lin

Publication type:

Article

Editor's note on 'Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene'.

Published in:: 2023
Publication type:: Letter to the Editor

Expression of concern on 'Dissecting the splicing mechanism of the Drosophila editing enzyme; dADAR'.

Published in:: 2023
Publication type:: Correction Notice

ATM, KAP1 and the Epstein–Barr virus polymerase processivity factor direct traffic at the intersection of transcription and replication.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11104, doi. 10.1093/nar/gkad823

By:

Xu, Huanzhou;
Akinyemi, Ibukun A;
Haley, John;
McIntosh, Michael T;
Bhaduri-McIntosh, Sumita

Publication type:

Article

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10934, doi. 10.1093/nar/gkad841

By:

Müller-Dott, Sophia;
Tsirvouli, Eirini;
Vazquez, Miguel;
Ramirez Flores, Ricardo O;
Badia-i-Mompel, Pau;
Fallegger, Robin;
Türei, Dénes;
Lægreid, Astrid;
Saez-Rodriguez, Julio

Publication type:

Article

Unprecedented reactivity of polyamines with aldehydic DNA modifications: structural determinants of reactivity, characterization and enzymatic stability of adducts.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10846, doi. 10.1093/nar/gkad837

By:

Gusti Ngurah Putu, Eka Putra;
Cattiaux, Laurent;
Lavergne, Thomas;
Pommier, Yves;
Bombard, Sophie;
Granzhan, Anton

Publication type:

Article

Immunoprecipitation of RNA–DNA hybrid interacting proteins in Trypanosoma brucei reveals conserved and novel activities, including in the control of surface antigen expression needed for immune evasion by antigenic variation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11123, doi. 10.1093/nar/gkad836

By:

Girasol, Mark J;
Briggs, Emma M;
Marques, Catarina A;
Batista, José M;
Beraldi, Dario;
Burchmore, Richard;
Lemgruber, Leandro;
McCulloch, Richard

Publication type:

Article

Detection of queuosine and queuosine precursors in tRNAs by direct RNA sequencing.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11197, doi. 10.1093/nar/gkad826

By:

Sun, Yu;
Piechotta, Michael;
Naarmann-de Vries, Isabel;
Dieterich, Christoph;
Ehrenhofer-Murray, Ann E

Publication type:

Article

Identification and quantification of small exon-containing isoforms in long-read RNA sequencing data.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. e104, doi. 10.1093/nar/gkad810

By:

Liu, Zhen;
Zhu, Chenchen;
Steinmetz, Lars M;
Wei, Wu

Publication type:

Article

A rice variation map derived from 10 548 rice accessions reveals the importance of rare variants.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10924, doi. 10.1093/nar/gkad840

By:

Wang, Tianyi;
He, Wenchuang;
Li, Xiaoxia;
Zhang, Chao;
He, Huiying;
Yuan, Qiaoling;
Zhang, Bin;
Zhang, Hong;
Leng, Yue;
Wei, Hua;
Xu, Qiang;
Shi, Chuanlin;
Liu, Xiangpei;
Guo, Mingliang;
Wang, Xianmeng;
Chen, Wu;
Zhang, Zhipeng;
Yang, Longbo;
Lv, Yang;
Qian, Hongge

Publication type:

Article

PML modulates epigenetic composition of chromatin to regulate expression of pro-metastatic genes in triple-negative breast cancer.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11024, doi. 10.1093/nar/gkad819

By:

Fracassi, Cristina;
Ugge', Martina;
Abdelhalim, Mohamed;
Zapparoli, Ettore;
Simoni, Matilde;
Magliulo, Daniela;
Mazza, Davide;
Lazarevic, Dejan;
Morelli, Marco J;
Collas, Philippe;
Bernardi, Rosa

Publication type:

Article

A sensor complements the steric gate when DNA polymerase ϵ discriminates ribonucleotides.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11225, doi. 10.1093/nar/gkad817

By:

Parkash, Vimal;
Kulkarni, Yashraj;
Bylund, Göran O;
Osterman, Pia;
Kamerlin, Shina Caroline Lynn;
Johansson, Erik

Publication type:

Article

An RNA thermometer in the chloroplast genome of Chlamydomonas facilitates temperature-controlled gene expression.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11386, doi. 10.1093/nar/gkad816

By:

Chung, Kin Pan;
Loiacono, F Vanessa;
Neupert, Juliane;
Wu, Mengting;
Bock, Ralph

Publication type:

Article

Live-cell imaging unveils distinct R-loop populations with heterogeneous dynamics.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11010, doi. 10.1093/nar/gkad812

By:

Martin, Robert M;
de Almeida, Madalena R;
Gameiro, Eduardo;
de Almeida, Sérgio F

Publication type:

Article

Discovery adductomics provides a comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10829, doi. 10.1093/nar/gkad822

By:

Guilbaud, Axel;
Ghanegolmohammadi, Farzan;
Wang, Yijun;
Leng, Jiapeng;
Kreymerman, Alexander;
Gamboa Varela, Jacqueline;
Garbern, Jessica;
Elwell, Hannah;
Cao, Fang;
Ricci-Blair, Elisabeth M;
Liang, Cui;
Balamkundu, Seetharamsing;
Vidoudez, Charles;
DeMott, Michael S;
Bedi, Kenneth;
Margulies, Kenneth B;
Bennett, David A;
Palmer, Abraham A;
Barkley-Levenson, Amanda;
Lee, Richard T

Publication type:

Article

Atomistic structure of the SARS-CoV-2 pseudoknot in solution from SAXS-driven molecular dynamics.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11332, doi. 10.1093/nar/gkad809

By:

He, Weiwei;
San Emeterio, Josue;
Woodside, Michael T;
Kirmizialtin, Serdal;
Pollack, Lois

Publication type:

Article

Impact of bound ssRNA length on allostery in the Dengue Virus NS3 helicase.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11213, doi. 10.1093/nar/gkad808

By:

Amrein, Fernando;
Sarto, Carolina;
Cababie, Leila A;
Gonzalez Flecha, F Luis;
Kaufman, Sergio B;
Arrar, Mehrnoosh

Publication type:

Article

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11298, doi. 10.1093/nar/gkad807

By:

Sieg, Jacob P;
Jolley, Elizabeth A;
Huot, Melanie J;
Babitzke, Paul;
Bevilacqua, Philip C

Publication type:

Article

Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10884, doi. 10.1093/nar/gkad797

By:

Larue, Graham E;
Roy, Scott W

Publication type:

Article

Compartmentalization of androgen receptors at endogenous genes in living cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10992, doi. 10.1093/nar/gkad803

By:

Yavuz, Selçuk;
Kabbech, Hélène;
van Staalduinen, Jente;
Linder, Simon;
van Cappellen, Wiggert A;
Nigg, Alex L;
Abraham, Tsion E;
Slotman, Johan A;
Quevedo, Marti;
Poot, Raymond A;
Zwart, Wilbert;
van Royen, Martin E;
Grosveld, Frank G;
Smal, Ihor;
Houtsmuller, Adriaan B

Publication type:

Article

Resolving altered base-pairing of RNA modifications with DNA nanoswitches.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11291, doi. 10.1093/nar/gkad802

By:

Todkari, Iranna Annappa;
Chandrasekaran, Arun Richard;
Punnoose, Jibin Abraham;
Mao, Song;
Haruehanroengra, Phensinee;
Beckles, Camryn;
Sheng, Jia;
Halvorsen, Ken

Publication type:

Article

BRCA1–BARD1 combines multiple chromatin recognition modules to bridge nascent nucleosomes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11080, doi. 10.1093/nar/gkad793

By:

Burdett, Hayden;
Foglizzo, Martina;
Musgrove, Laura J;
Kumar, Dhananjay;
Clifford, Gillian;
Campbell, Lisa J;
Heath, George R;
Zeqiraj, Elton;
Wilson, Marcus D

Publication type:

Article

STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. e103, doi. 10.1093/nar/gkad801

By:

Zhang, Chihao;
Dong, Kangning;
Aihara, Kazuyuki;
Chen, Luonan;
Zhang, Shihua

Publication type:

Article

Fusang: a framework for phylogenetic tree inference via deep learning.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10909, doi. 10.1093/nar/gkad805

By:

Wang, Zhicheng;
Sun, Jinnan;
Gao, Yuan;
Xue, Yongwei;
Zhang, Yubo;
Li, Kuan;
Zhang, Wei;
Zhang, Chi;
Zu, Jian;
Zhang, Li

Publication type:

Article

Hypoxia stabilizes SETDB1 to maintain genome stability.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11178, doi. 10.1093/nar/gkad796

By:

Park, Sungryul;
Cho, Jin Hwa;
Kim, Jong-Hwan;
Park, Mijin;
Park, Seulki;
Kim, Seon-Young;
Kim, Seon-Kyu;
Kim, Kidae;
Park, Sung Goo;
Park, Byoung Chul;
Moon, Jeong Hee;
Lee, Gaseul;
Kim, Sunhong;
Kim, Jung-Ae;
Kim, Jeong-Hoon

Publication type:

Article

Efficient 3′-pairing renders microRNA targeting less sensitive to mRNA seed accessibility.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11162, doi. 10.1093/nar/gkad795

By:

Kosek, David M;
Banijamali, Elnaz;
Becker, Walter;
Petzold, Katja;
Andersson, Emma R

Publication type:

Article

Yeast ribosome biogenesis factors Puf6 and Nog2 and ribosomal proteins uL2 and eL43 act in concert to facilitate the release of nascent large ribosomal subunits from the nucleolus.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11277, doi. 10.1093/nar/gkad794

By:

LaPeruta, Amber J;
Hedayati, Stefanie;
Micic, Jelena;
Fitzgerald, Fiona;
Kim, David;
Oualline, Grace;
Woolford, John L

Publication type:

Article

Lineage specific 3D genome structure in the adult human brain and neurodevelopmental changes in the chromatin interactome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11142, doi. 10.1093/nar/gkad798

By:

Rahman, Samir;
Dong, Pengfei;
Apontes, Pasha;
Fernando, Michael B;
Kosoy, Roman;
Townsley, Kayla G;
Girdhar, Kiran;
Bendl, Jaroslav;
Shao, Zhiping;
Misir, Ruth;
Tsankova, Nadia;
Kleopoulos, Steven P;
Brennand, Kristen J;
Fullard, John F;
Roussos, Panos

Publication type:

Article

Inhibition of CDK12 elevates cancer cell dependence on P-TEFb by stimulation of RNA polymerase II pause release.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10970, doi. 10.1093/nar/gkad792

By:

Wang, Zhijia;
Himanen, Samu V;
Haikala, Heidi M;
Friedel, Caroline C;
Vihervaara, Anniina;
Barborič, Matjaž

Publication type:

Article

ZNF432 stimulates PARylation and inhibits DNA resection to balance PARPi sensitivity and resistance.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11056, doi. 10.1093/nar/gkad791

By:

O'Sullivan, Julia;
Kothari, Charu;
Caron, Marie-Christine;
Gagné, Jean-Philippe;
Jin, Zhigang;
Nonfoux, Louis;
Beneyton, Adèle;
Coulombe, Yan;
Thomas, Mélissa;
Atalay, Nurgul;
Meng, X Wei;
Milano, Larissa;
Jean, Dominique;
Boisvert, François-Michel;
Kaufmann, Scott H;
Hendzel, Michael J;
Masson, Jean-Yves;
Poirier, Guy G

Publication type:

Article

HIV-PULSE: a long-read sequencing assay for high-throughput near full-length HIV-1 proviral genome characterization.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. e102, doi. 10.1093/nar/gkad790

By:

Lambrechts, Laurens;
Bonine, Noah;
Verstraeten, Rita;
Pardons, Marion;
Noppe, Ytse;
Rutsaert, Sofie;
Van Nieuwerburgh, Filip;
Van Criekinge, Wim;
Cole, Basiel;
Vandekerckhove, Linos

Publication type:

Article

In situ visualization of m<sup>6</sup>A sites in cellular mRNAs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. e101, doi. 10.1093/nar/gkad787

By:

Sheehan, Charles J;
Marayati, Bahjat Fadi;
Bhatia, Janvi;
Meyer, Kate D

Publication type:

Article

Correction to 'Cluster-independent marker feature identification from single-cell omics data using SEMITONES'.

Published in:: 2023
Publication type:: Correction Notice

A generalizable scaffold-based approach for structure determination of RNAs by cryo-EM.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. e100, doi. 10.1093/nar/gkad784

By:

Langeberg, Conner J;
Kieft, Jeffrey S

Publication type:

Article

DNA mismatch repair protects the genome from oxygen-induced replicative mutagenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11040, doi. 10.1093/nar/gkad775

By:

Lózsa, Rita;
Németh, Eszter;
Gervai, Judit Z;
Márkus, Bence G;
Kollarics, Sándor;
Gyüre, Zsolt;
Tóth, Judit;
Simon, Ferenc;
Szüts, Dávid

Publication type:

Article

Drosha-dependent microRNAs modulate FUS-mediated neurodegeneration in vivo.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11258, doi. 10.1093/nar/gkad774

By:

Kour, Sukhleen;
Fortuna, Tyler;
Anderson, Eric N;
Mawrie, Darilang;
Bilstein, Jessica;
Sivasubramanian, Ramakrishnan;
Ward, Caroline;
Roy, Rishit;
Rajasundaram, Dhivyaa;
Sterneckert, Jared;
Pandey, Udai Bhan

Publication type:

Article

Alternative splicing of BCL-x is controlled by RBM25 binding to a G-quadruplex in BCL-x pre-mRNA.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11239, doi. 10.1093/nar/gkad772

By:

Sénéchal, Ronan Le;
Keruzoré, Marc;
Quillévéré, Alicia;
Loaëc, Nadège;
Dinh, Van-Trang;
Reznichenko, Oksana;
Guixens-Gallardo, Pedro;
Corcos, Laurent;
Teulade-Fichou, Marie-Paule;
Granzhan, Anton;
Blondel, Marc

Publication type:

Article

Development of a novel tobramycin dependent riboswitch.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11375, doi. 10.1093/nar/gkad767

By:

Kraus, Leon;
Duchardt-Ferner, Elke;
Bräuchle, Eric;
Fürbacher, Simon;
Kelvin, Daniel;
Marx, Hans;
Boussebayle, Adrien;
Maurer, Lisa-Marie;
Bofill-Bosch, Cristina;
Wöhnert, Jens;
Suess, Beatrix

Publication type:

Article

An interaction between eIF4A3 and eIF3g drives the internal initiation of translation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10950, doi. 10.1093/nar/gkad763

By:

Chang, Jeeyoon;
Shin, Min-Kyung;
Park, Joori;
Hwang, Hyun Jung;
Locker, Nicolas;
Ahn, Junhak;
Kim, Doyeon;
Baek, Daehyun;
Park, Yeonkyoung;
Lee, Yujin;
Boo, Sung Ho;
Kim, Hyeong-In;
Kim, Yoon Ki

Publication type:

Article

High-resolution structure of stem-loop 4 from the 5′-UTR of SARS-CoV-2 solved by solution state NMR.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11318, doi. 10.1093/nar/gkad762

By:

Vögele, Jennifer;
Hymon, Daniel;
Martins, Jason;
Ferner, Jan;
Jonker, Hendrik R A;
Hargrove, Amanda E;
Weigand, Julia E;
Wacker, Anna;
Schwalbe, Harald;
Wöhnert, Jens;
Duchardt-Ferner, Elke

Publication type:

Article

Systematic sequence engineering enhances the induction strength of the glucose-regulated GTH1 promoter of Komagataella phaffii.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 11358, doi. 10.1093/nar/gkad752

By:

Flores-Villegas, Mirelle;
Rebnegger, Corinna;
Kowarz, Viktoria;
Prielhofer, Roland;
Mattanovich, Diethard;
Gasser, Brigitte

Publication type:

Article

Additional principles that govern the release of pre-ribosomes from the nucleolus into the nucleoplasm in yeast.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 20, p. 10867, doi. 10.1093/nar/gkac430

By:

LaPeruta, Amber J;
Micic, Jelena;
L Woolford Jr., John

Publication type:

Article