Works matching IS 03051048 AND DT 2023 AND VI 51 AND IP 17

Results: 40

spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. e92, doi. 10.1093/nar/gkad682

By:

Hacker, William C;
Elcock, Adrian H

Publication type:

Article

Physical interaction between MSL2 and CLAMP assures direct cooperativity and prevents competition at composite binding sites.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9039, doi. 10.1093/nar/gkad680

By:

Eggers, Nikolas;
Gkountromichos, Fotios;
Krause, Silke;
Campos-Sparr, Aline;
Becker, Peter B

Publication type:

Article

Plasmids pick a bacterial partner before committing to conjugation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 8925, doi. 10.1093/nar/gkad678

By:

Frankel, Gad;
David, Sophia;
Low, Wen Wen;
Seddon, Chloe;
Wong, Joshua L C;
Beis, Konstantinos

Publication type:

Article

Structures and implications of the C962R protein of African swine fever virus.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9475, doi. 10.1093/nar/gkad677

By:

Shao, Zhiwei;
Su, Shichen;
Yang, Jie;
Zhang, Weizhen;
Gao, Yanqing;
Zhao, Xin;
Zhang, Yixi;
Shao, Qiyuan;
Cao, Chulei;
Li, Huili;
Liu, Hehua;
Zhang, Jinru;
Lin, Jinzhong;
Ma, Jinbiao;
Gan, Jianhua

Publication type:

Article

Structural and functional characterization of MrpR, the master repressor of the Bacillus subtilis prophage SPβ.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9452, doi. 10.1093/nar/gkad675

By:

Kohm, Katharina;
Jalomo-Khayrova, Ekaterina;
Krüger, Aileen;
Basu, Syamantak;
Steinchen, Wieland;
Bange, Gert;
Frunzke, Julia;
Hertel, Robert;
Commichau, Fabian M;
Czech, Laura

Publication type:

Article

HELZ2: a new, interferon-regulated, human 3′-5′ exoribonuclease of the RNB family is expressed from a non-canonical initiation codon.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9279, doi. 10.1093/nar/gkad673

By:

Huntzinger, Eric;
Sinteff, Jordan;
Morlet, Bastien;
Séraphin, Bertrand

Publication type:

Article

Inhibitory mechanism of CRISPR-Cas9 by AcrIIC4.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9442, doi. 10.1093/nar/gkad669

By:

Li, Xuzichao;
Liao, Fumeng;
Gao, Jiaqi;
Song, Guangyong;
Zhang, Chendi;
Ji, Nan;
Wang, Xiaoshen;
Wen, Jing;
He, Jia;
Wei, Yong;
Zhang, Heng;
Li, Zhuang;
Yu, Guimei;
Yin, Hang

Publication type:

Article

Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9432, doi. 10.1093/nar/gkad668

By:

Yoo, Jaehun;
Lee, Jangmin;
Kim, Jungwook

Publication type:

Article

Deciphering a global source of non-genetic heterogeneity in cancer cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9019, doi. 10.1093/nar/gkad666

By:

Zhang, Jianhan;
Han, Xu;
Ma, Liang;
Xu, Shuhui;
Lin, Yihan

Publication type:

Article

Correction to 'DNA-PK is activated by SIRT2 deacetylation to promote DNA double-strand break repair by non-homologous end joining'.

Published in:: 2023
Publication type:: Correction Notice

Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 8909, doi. 10.1093/nar/gkad661

By:

Wang, Ying-Hui;
Dai, Hong;
Zhang, Ling;
Wu, Yun;
Wang, Jingfen;
Wang, Chen;
Xu, Cai-Huang;
Hou, Hai;
Yang, Bing;
Zhu, Yongqun;
Zhang, Xing;
Zhou, Jie

Publication type:

Article

Programmable site-specific DNA double-strand breaks via PNA-assisted prokaryotic Argonautes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9491, doi. 10.1093/nar/gkad655

By:

Marsic, Tin;
Gundra, Sivakrishna Rao;
Wang, Qiaochu;
Aman, Rashid;
Mahas, Ahmed;
Mahfouz, Magdy M

Publication type:

Article

Pot1b<sup>−/−</sup> tumors activate G-quadruplex-induced DNA damage to promote telomere hyper-elongation.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9227, doi. 10.1093/nar/gkad648

By:

Takasugi, Taylor;
Gu, Peili;
Liang, Fengshan;
Staco, Isabelle;
Chang, Sandy

Publication type:

Article

Observing inhibition of the SARS-CoV-2 helicase at single-nucleotide resolution.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9266, doi. 10.1093/nar/gkad660

By:

Marx, Sinduja K;
Mickolajczyk, Keith J;
Craig, Jonathan M;
Thomas, Christopher A;
Pfeffer, Akira M;
Abell, Sarah J;
Carrasco, Jessica D;
Franzi, Michaela C;
Huang, Jesse R;
Kim, Hwanhee C;
Brinkerhoff, Henry;
Kapoor, Tarun M;
Gundlach, Jens H;
Laszlo, Andrew H

Publication type:

Article

Four additional natural 7-deazaguanine derivatives in phages and how to make them.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9214, doi. 10.1093/nar/gkad657

By:

Cui, Liang;
Balamkundu, Seetharamsing;
Liu, Chuan-Fa;
Ye, Hong;
Hourihan, Jacob;
Rausch, Astrid;
Hauß, Christopher;
Nilsson, Emelie;
Hoetzinger, Matthias;
Holmfeldt, Karin;
Zhang, Weijia;
Martinez-Alvarez, Laura;
Peng, Xu;
Tremblay, Denise;
Moinau, Sylvain;
Solonenko, Natalie;
Sullivan, Matthew B;
Lee, Yan-Jiun;
Mulholland, Andrew;
Weigele, Peter R

Publication type:

Article

CRI-SPA: a high-throughput method for systematic genetic editing of yeast libraries.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. e91, doi. 10.1093/nar/gkad656

By:

Cachera, Paul;
Olsson, Helén;
Coumou, Hilde;
Jensen, Mads L;
Sánchez, Benjamín J;
Strucko, Tomas;
van den Broek, Marcel;
Daran, Jean-Marc;
Jensen, Michael K;
Sonnenschein, Nikolaus;
Lisby, Michael;
Mortensen, Uffe H

Publication type:

Article

Retraction and replacement of 'Alternative splicing modulation mediated by G-quadruplex structures in MALAT1 lncRNA'.

Published in:: 2023
Publication type:: Correction Notice

Absence of mitochondrial SLC25A51 enhances PARP1-dependent DNA repair by increasing nuclear NAD<sup>+</sup> levels.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9248, doi. 10.1093/nar/gkad659

By:

Güldenpfennig, Anka;
Hopp, Ann-Katrin;
Muskalla, Lukas;
Manetsch, Patrick;
Raith, Fabio;
Hellweg, Lars;
Dördelmann, Cyril;
Leslie Pedrioli, Deena M;
Johnsson, Kai;
Superti-Furga, Giulio;
Hottiger, Michael O

Publication type:

Article

Integrated 3D genome, epigenome and transcriptome analyses reveal transcriptional coordination of circadian rhythm in rice.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9001, doi. 10.1093/nar/gkad658

By:

Zhang, Ying;
Chen, Guoting;
Deng, Li;
Gao, Baibai;
Yang, Jing;
Ding, Cheng;
Zhang, Qing;
Ouyang, Weizhi;
Guo, Minrong;
Wang, Wenxia;
Liu, Beibei;
Zhang, Qinghua;
Sung, Wing-Kin;
Yan, Jiapei;
Li, Guoliang;
Li, Xingwang

Publication type:

Article

Three-way contact analysis characterizes the higher order organization of the Tcra locus.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 8987, doi. 10.1093/nar/gkad641

By:

Dai, Ranran;
Zhu, Yongchang;
Li, Zhaoqiang;
Qin, Litao;
Liu, Nan;
Liao, Shixiu;
Hao, Bingtao

Publication type:

Article

Dot1l cooperates with Npm1 to repress endogenous retrovirus MERVL in embryonic stem cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 8970, doi. 10.1093/nar/gkad640

By:

Zhao, Xin;
Li, Xiaomin;
Sun, Haiyang;
Zhao, Xuan;
Gao, Tingting;
Shi, Panpan;
Chen, Fuquan;
Liu, Lin;
Lu, Xinyi

Publication type:

Article

Identification of G-quadruplex structures in MALAT1 lncRNA that interact with nucleolin and nucleophosmin.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9415, doi. 10.1093/nar/gkad639

By:

Ghosh, Arpita;
Pandey, Satya Prakash;
Joshi, Dheeraj Chandra;
Rana, Priya;
Ansari, Asgar Hussain;
Sundar, Jennifer Seematti;
Singh, Praveen;
Khan, Yasmeen;
Ekka, Mary Krishna;
Chakraborty, Debojyoti;
Maiti, Souvik

Publication type:

Article

Disparate roles for C. elegans DNA translocase paralogs RAD-54.L and RAD-54.B in meiotic prophase germ cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9183, doi. 10.1093/nar/gkad638

By:

Yamaya, Kei;
Wang, Bin;
Memar, Nadin;
Odiba, Arome Solomon;
Woglar, Alexander;
Gartner, Anton;
Villeneuve, Anne M

Publication type:

Article

The induction of p53 correlates with defects in the production, but not the levels, of the small ribosomal subunit and stalled large ribosomal subunit biogenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9397, doi. 10.1093/nar/gkad637

By:

Eastham, Matthew John;
Pelava, Andria;
Wells, Graeme Raymond;
Lee, Justine Katherine;
Lawrence, Isabella Rachel;
Stewart, Joshua;
Deichner, Maria;
Hertle, Regina;
Watkins, Nicholas James;
Schneider, Claudia

Publication type:

Article

The genomic distribution of transposable elements is driven by spatially variable purifying selection.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9203, doi. 10.1093/nar/gkad635

By:

Langmüller, Anna M;
Nolte, Viola;
Dolezal, Marlies;
Schlötterer, Christian

Publication type:

Article

Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 8957, doi. 10.1093/nar/gkad633

By:

Liao, Ting-Wei;
Huang, Lin;
Wilson, Timothy J;
Ganser, Laura R;
Lilley, David M J;
Ha, Taekjip

Publication type:

Article

The HDAC6-RNF168 axis regulates H2A/H2A.X ubiquitination to enable double-strand break repair.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9166, doi. 10.1093/nar/gkad631

By:

Qiu, Lingyu;
Xu, Wenchao;
Lu, Xiaopeng;
Chen, Feng;
Chen, Yongcan;
Tian, Yuan;
Zhu, Qian;
Liu, Xiangyu;
Wang, Yongqing;
Pei, Xin-Hai;
Xu, Xingzhi;
Zhang, Jun;
Zhu, Wei-Guo

Publication type:

Article

FANCD2 and RAD51 recombinase directly inhibit DNA2 nuclease at stalled replication forks and FANCD2 acts as a novel RAD51 mediator in strand exchange to promote genome stability.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9144, doi. 10.1093/nar/gkad624

By:

Liu, Wenpeng;
Polaczek, Piotr;
Roubal, Ivan;
Meng, Yuan;
Choe, Won-chae;
Caron, Marie-Christine;
Sedgeman, Carl A;
Xi, Yu;
Liu, Changwei;
Wu, Qiong;
Zheng, Li;
Masson, Jean-Yves;
Shen, Binghui;
Campbell, Judith L

Publication type:

Article

CSDE1 promotes miR-451 biogenesis.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9385, doi. 10.1093/nar/gkad619

By:

Kakumani, Pavan Kumar;
Ko, Yunkoo;
Ramakrishna, Sushmitha;
Christopher, Grace;
Dodgson, Maria;
Shrinet, Jatin;
Harvey, Louis-Mathieu;
Shin, Chanseok;
Simard, Martin J

Publication type:

Article

Distinct characteristics of two types of alternative lengthening of telomeres in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9122, doi. 10.1093/nar/gkad617

By:

Sung, Sanghyun;
Kim, Eunkyeong;
Niida, Hiroyuki;
Kim, Chuna;
Lee, Junho

Publication type:

Article

BLM helicase protein negatively regulates stress granule formation through unwinding RNA G-quadruplex structures.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9369, doi. 10.1093/nar/gkad613

By:

Danino, Yehuda M;
Molitor, Lena;
Rosenbaum-Cohen, Tamar;
Kaiser, Sebastian;
Cohen, Yahel;
Porat, Ziv;
Marmor-Kollet, Hagai;
Katina, Corine;
Savidor, Alon;
Rotkopf, Ron;
Ben-Isaac, Eyal;
Golani, Ofra;
Levin, Yishai;
Monchaud, David;
Hickson, Ian D;
Hornstein, Eran

Publication type:

Article

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9101, doi. 10.1093/nar/gkad612

By:

Litwin, Ireneusz;
Nowicka, Małgorzata;
Markowska, Katarzyna;
Maciaszczyk-Dziubińska, Ewa;
Tomaszewska, Paulina;
Wysocki, Robert;
Kramarz, Karol

Publication type:

Article

Glycidamide-induced hypermutation in yeast single-stranded DNA reveals a ubiquitous clock-like mutational motif in humans.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9075, doi. 10.1093/nar/gkad611

By:

Hudson, Kathleen M;
Klimczak, Leszek J;
Sterling, Joan F;
Burkholder, Adam B;
Kazanov, Marat D;
Saini, Natalie;
Mieczkowski, Piotr A;
Gordenin, Dmitry A

Publication type:

Article

Different SWI/SNF complexes coordinately promote R-loop- and RAD52-dependent transcription-coupled homologous recombination.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9055, doi. 10.1093/nar/gkad609

By:

Davó-Martínez, Carlota;
Helfricht, Angela;
Ribeiro-Silva, Cristina;
Raams, Anja;
Tresini, Maria;
Uruci, Sidrit;
van Cappellen, Wiggert A;
Taneja, Nitika;
Demmers, Jeroen A A;
Pines, Alex;
Theil, Arjan F;
Vermeulen, Wim;
Lans, Hannes

Publication type:

Article

Characterization of RNA driven structural changes in full length RIG-I leading to its agonism or antagonism.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9356, doi. 10.1093/nar/gkad606

By:

Sikorska, Justyna;
Hou, Yan;
Chiurazzi, Paul;
Siu, Tony;
Baltus, Gretchen A;
Sheth, Payal;
McLaren, David G;
Truong, Quang;
Parish, Craig A;
Wyss, Daniel F

Publication type:

Article

A mutation-sensitive, multiplexed and amplification-free detection of nucleic acids by stretching single-molecule tandem hairpin probes.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. e90, doi. 10.1093/nar/gkad601

By:

Yang, Ya-Jun;
Fu, Hang;
Li, Xiao-Lu;
Yang, Hong-Yu;
Zhou, Er-Chi;
Xie, Cheng-Yu;
Wu, Shu-Wen;
He, Fan;
Zhang, Yan;
Zhang, Xing-Hua

Publication type:

Article

Evaluation of the determinants for improved pluripotency induction and maintenance by engineered SOX17.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 8934, doi. 10.1093/nar/gkad597

By:

Hu, Haoqing;
Ho, Derek Hoi Hang;
Tan, Daisylyn Senna;
MacCarthy, Caitlin M;
Yu, Cheng-han;
Weng, Mingxi;
Schöler, Hans Robert;
Jauch, Ralf

Publication type:

Article

RNA helicase DDX6 and scaffold protein GW182 in P-bodies promote biogenesis of stress granules.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9337, doi. 10.1093/nar/gkad585

By:

Majerciak, Vladimir;
Zhou, Tongqing;
Kruhlak, Michael J;
Zheng, Zhi-Ming

Publication type:

Article

mRNA decapping activators Pat1 and Dhh1 regulate transcript abundance and translation to tune cellular responses to nutrient availability.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9314, doi. 10.1093/nar/gkad584

By:

Vijjamarri, Anil Kumar;
Gupta, Neha;
Onu, Chisom;
Niu, Xiao;
Zhang, Fan;
Kumar, Rakesh;
Lin, Zhenguo;
Greenberg, Miriam L;
Hinnebusch, Alan G

Publication type:

Article

The structure and mechanism of action of a distinct class of dicistrovirus intergenic region IRESs.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 17, p. 9294, doi. 10.1093/nar/gkad569

By:

Abaeva, Irina S;
Young, Christina;
Warsaba, Reid;
Khan, Nadiyah;
Tran, Lan Vy;
Jan, Eric;
Pestova, Tatyana V;
Hellen, Christopher U T

Publication type:

Article