Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 6

Results: 43

Correction to 'Impaired in vivo binding of MeCP2 to chromatin in the absence of its DNA methyl-binding domain'.

Published in:: 2022
Publication type:: Correction Notice

Correction to 'MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain'.

Published in:: 2022
Publication type:: Correction Notice

Correction to 'Stabilization of SMAR1 mRNA by PGA2 involves a stem–loop structure in the 5′ UTR'.

Published in:: 2022
Publication type:: Correction Notice

Activating cryptic biosynthetic gene cluster through a CRISPR–Cas12a-mediated direct cloning approach.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3581, doi. 10.1093/nar/gkac181

By:

Liang, Mindong;
Liu, Leshi;
Xu, Fei;
Zeng, Xiaoqian;
Wang, Runjun;
Yang, Jinling;
Wang, Weishan;
Karthik, Loganathan;
Liu, Jiakun;
Yang, Zhiheng;
Zhu, Guoliang;
Wang, Shuliu;
Bai, Linquan;
Tong, Yaojun;
Liu, Xueting;
Wu, Min;
Zhang, Li-Xin;
Tan, Gao-Yi

Publication type:

Article

Retron reverse transcriptase termination and phage defense are dependent on host RNase H1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3490, doi. 10.1093/nar/gkac177

By:

Palka, Christina;
Fishman, Chloe B;
Bhattarai-Kline, Santi;
Myers, Samuel A;
Shipman, Seth L

Publication type:

Article

Genome-wide landscape of ApiAP2 transcription factors reveals a heterochromatin-associated regulatory network during Plasmodium falciparum blood-stage development.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3413, doi. 10.1093/nar/gkac176

By:

Shang, Xiaomin;
Wang, Changhong;
Fan, Yanting;
Guo, Gangqiang;
Wang, Fei;
Zhao, Yuemeng;
Sheng, Fei;
Tang, Jianxia;
He, Xiaoqin;
Yu, Xinyu;
Zhang, Meihua;
Zhu, Guoding;
Yin, Shigang;
Mu, Jianbing;
Culleton, Richard;
Cao, Jun;
Jiang, Mei;
Zhang, Qingfeng

Publication type:

Article

RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3018, doi. 10.1093/nar/gkac174

By:

Agapov, Aleksei;
Olina, Anna;
Kulbachinskiy, Andrey

Publication type:

Article

human AP-endonuclease 1 (APE1) is a DNA G-quadruplex structure binding protein and regulates KRAS expression in pancreatic ductal adenocarcinoma cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3394, doi. 10.1093/nar/gkac172

By:

Pramanik, Suravi;
Chen, Yingling;
Song, Heyu;
Khutsishvili, Irine;
Marky, Luis A;
Ray, Sutapa;
Natarajan, Amarnath;
Singh, Pankaj K;
Bhakat, Kishor K

Publication type:

Article

cytosine base editor toolkit with varying activity windows and target scopes for versatile gene manipulation in plants.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3565, doi. 10.1093/nar/gkac166

By:

Xiong, Xiangyu;
Li, Zhenxiang;
Liang, Jieping;
Liu, Kehui;
Li, Chenlong;
Li, Jian-Feng

Publication type:

Article

Predicting exon criticality from protein sequence.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3128, doi. 10.1093/nar/gkac155

By:

Desai, Jigar;
Francis, Christopher;
Longo, Kenneth;
Hoss, Andrew

Publication type:

Article

Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3379, doi. 10.1093/nar/gkac165

By:

Jobbins, Andrew M;
Haberman, Nejc;
Artigas, Natalia;
Amourda, Christopher;
Paterson, Helen A B;
Yu, Sijia;
Blackford, Samuel J I;
Montoya, Alex;
Dore, Marian;
Wang, Yi-Fang;
Sardini, Alessandro;
Cebola, Inês;
Zuber, Johannes;
Rashid, Sheikh Tamir;
Lenhard, Boris;
Vernia, Santiago

Publication type:

Article

DNAcycP: a deep learning tool for DNA cyclizability prediction.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3142, doi. 10.1093/nar/gkac162

By:

Li, Keren;
Carroll, Matthew;
Vafabakhsh, Reza;
Wang, Xiaozhong A;
Wang, Ji-Ping

Publication type:

Article

Predicting base editing outcomes using position-specific sequence determinants.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3551, doi. 10.1093/nar/gkac161

By:

Pallaseni, Ananth;
Peets, Elin Madli;
Koeppel, Jonas;
Weller, Juliane;
Vanderstichele, Thomas;
Ho, Uyen Linh;
Crepaldi, Luca;
van Leeuwen, Jolanda;
Allen, Felicity;
Parts, Leopold

Publication type:

Article

i-Motif formation and spontaneous deletions in human cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3445, doi. 10.1093/nar/gkac158

By:

Martella, Marianna;
Pichiorri, Flavia;
Chikhale, Rupesh V;
Abdelhamid, Mahmoud A S;
Waller, Zoë A E;
Smith, Steven S

Publication type:

Article

Programmable manipulation of oligonucleotide–albumin interaction for elongated circulation time.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3083, doi. 10.1093/nar/gkac156

By:

Yang, Cai;
Zhao, Haitao;
Sun, Yang;
Wang, Cheng;
Geng, Xinyao;
Wang, Ruowen;
Tang, Lumin;
Han, Da;
Liu, Jianjun;
Tan, Weihong

Publication type:

Article

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3155, doi. 10.1093/nar/gkac163

By:

Khedkar, Supriya;
Smyshlyaev, Georgy;
Letunic, Ivica;
Maistrenko, Oleksandr M;
Coelho, Luis Pedro;
Orakov, Askarbek;
Forslund, Sofia K;
Hildebrand, Falk;
Luetge, Mechthild;
Schmidt, Thomas S B;
Barabas, Orsolya;
Bork, Peer

Publication type:

Article

EWS splicing regulation contributes to balancing Foxp1 isoforms required for neuronal differentiation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3362, doi. 10.1093/nar/gkac154

By:

Verdile, Veronica;
Svetoni, Francesca;
La Rosa, Piergiorgio;
Ferrante, Gabriele;
Cesari, Eleonora;
Sette, Claudio;
Paronetto, Maria Paola

Publication type:

Article

Global chromosome rearrangement induced by CRISPR-Cas9 reshapes the genome and transcriptome of human cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3456, doi. 10.1093/nar/gkac153

By:

Liu, Ying;
Ma, Guangwei;
Gao, Zenghong;
Li, Jian;
Wang, Jin;
Zhu, Xiangping;
Ma, Ruowu;
Yang, Jiawen;
Zhou, Yiting;
Hu, Kaishun;
Zhang, Yin;
Guo, Yabin

Publication type:

Article

High-throughput screening of cell-free riboswitches by fluorescence-activated droplet sorting.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3535, doi. 10.1093/nar/gkac152

By:

Tabuchi, Takeshi;
Yokobayashi, Yohei

Publication type:

Article

G-quadruplex inducer/stabilizer pyridostatin targets SUB1 to promote cytotoxicity of a transplatinum complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3070, doi. 10.1093/nar/gkac151

By:

Hou, Yinzhu;
Gan, Tieliang;
Fang, Tiantian;
Zhao, Yao;
Luo, Qun;
Liu, Xingkai;
Qi, Luyu;
Zhang, Yanyan;
Jia, Feifei;
Han, Juanjuan;
Li, Shumu;
Wang, Shijun;
Wang, Fuyi

Publication type:

Article

7,8-Dihydro-8-oxo-1,N6-ethenoadenine: an exclusively Hoogsteen-paired thymine mimic in DNA that induces A→T transversions in Escherichia coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3056, doi. 10.1093/nar/gkac148

By:

Aralov, Andrey V;
Gubina, Nina;
Cabrero, Cristina;
Tsvetkov, Vladimir B;
Turaev, Anton V;
Fedeles, Bogdan I;
Croy, Robert G;
Isaakova, Ekaterina A;
Melnik, Denis;
Dukova, Svetlana;
Ryazantsev, Dmitriy Y;
Khrulev, Alexei A;
Varizhuk, Anna M;
González, Carlos;
Zatsepin, Timofei S;
Essigmann, John M

Publication type:

Article

Summarizing internal dynamics boosts differential analysis and functional interpretation of super enhancers.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3115, doi. 10.1093/nar/gkac141

By:

Liu, Xiang;
Zhao, Bo;
Shaw, Timothy I;
Fridley, Brooke L;
Duckett, Derek R;
Tan, Aik Choon;
Teng, Mingxiang

Publication type:

Article

mobile restriction–modification system provides phage defence and resolves an epigenetic conflict with an antagonistic endonuclease.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3348, doi. 10.1093/nar/gkac147

By:

Birkholz, Nils;
Jackson, Simon A;
Fagerlund, Robert D;
Fineran, Peter C

Publication type:

Article

Chromatin landscape associated with sexual differentiation in a UV sex determination system.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3307, doi. 10.1093/nar/gkac145

By:

Gueno, Josselin;
Borg, Michael;
Bourdareau, Simon;
Cossard, Guillaume;
Godfroy, Olivier;
Lipinska, Agnieszka;
Tirichine, Leila;
Cock, J Mark;
Coelho, Susana M

Publication type:

Article

Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3475, doi. 10.1093/nar/gkac144

By:

Ugolini, Camilla;
Mulroney, Logan;
Leger, Adrien;
Castelli, Matteo;
Criscuolo, Elena;
Williamson, Maia Kavanagh;
Davidson, Andrew D;
Almuqrin, Abdulaziz;
Giambruno, Roberto;
Jain, Miten;
Frigè, Gianmaria;
Olsen, Hugh;
Tzertzinis, George;
Schildkraut, Ira;
Wulf, Madalee G;
Corrêa, Ivan R;
Ettwiller, Laurence;
Clementi, Nicola;
Clementi, Massimo;
Mancini, Nicasio

Publication type:

Article

8-oxodG accumulation within super-enhancers marks fragile CTCF-mediated chromatin loops.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3292, doi. 10.1093/nar/gkac143

By:

Scala, Giovanni;
Gorini, Francesca;
Ambrosio, Susanna;
Chiariello, Andrea M;
Nicodemi, Mario;
Lania, Luigi;
Majello, Barbara;
Amente, Stefano

Publication type:

Article

Spacer2PAM: A computational framework to guide experimental determination of functional CRISPR-Cas system PAM sequences.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3523, doi. 10.1093/nar/gkac142

By:

Rybnicky, Grant A;
Fackler, Nicholas A;
Karim, Ashty S;
Köpke, Michael;
Jewett, Michael C

Publication type:

Article

BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3323, doi. 10.1093/nar/gkac146

By:

Liang, Chuqian;
Ke, Qiong;
Liu, Zunpeng;
Ren, Jie;
Zhang, Weiqi;
Hu, Jianli;
Wang, Zehua;
Chen, Hong;
Xia, Kai;
Lai, Xingqiang;
Wang, Qiaoran;
Yang, Kuan;
Li, Wei;
Wu, Zeming;
Wang, Chao;
Yan, Haoteng;
Jiang, Xiaoyu;
Ji, Zhejun;
Ma, Miyang;
Long, Xiao

Publication type:

Article

Selective and stable base pairing by alkynylated nucleosides featuring a spatially-separated recognition interface.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3042, doi. 10.1093/nar/gkac140

By:

Okamura, Hidenori;
Trinh, Giang Hoang;
Dong, Zhuoxin;
Masaki, Yoshiaki;
Seio, Kohji;
Nagatsugi, Fumi

Publication type:

Article

Genome-wide characterization of i-motifs and their potential roles in the stability and evolution of transposable elements in rice.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3226, doi. 10.1093/nar/gkac121

By:

Ma, Xing;
Feng, Yilong;
Yang, Ying;
Li, Xin;
Shi, Yining;
Tao, Shentong;
Cheng, Xuejiao;
Huang, Jian;
Wang, Xiu-e;
Chen, Caiyan;
Monchaud, David;
Zhang, Wenli

Publication type:

Article

Cdc48Ufd1/Npl4 segregase removes mislocalized centromeric histone H3 variant CENP-A from non-centromeric chromatin.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3276, doi. 10.1093/nar/gkac135

By:

Ohkuni, Kentaro;
Gliford, Loran;
Au, Wei-Chun;
Suva, Evelyn;
Kaiser, Peter;
Basrai, Munira A

Publication type:

Article

Molecular basis of crosstalk in nuclear receptors: heterodimerization between PXR and CAR and the implication in gene regulation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3254, doi. 10.1093/nar/gkac133

By:

Bwayi, Monicah N;
Garcia-Maldonado, Efren;
Chai, Sergio C;
Xie, Boer;
Chodankar, Shirish;
Huber, Andrew D;
Wu, Jing;
Annu, Kavya;
Wright, William C;
Lee, Hyeong-Min;
Seetharaman, Jayaraman;
Wang, Jingheng;
Buchman, Cameron D;
Peng, Junmin;
Chen, Taosheng

Publication type:

Article

RecD2 helicase balances RecA activities.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3432, doi. 10.1093/nar/gkac131

By:

Ramos, Cristina;
Hernández-Tamayo, Rogelio;
López-Sanz, María;
Carrasco, Begoña;
Serrano, Ester;
Alonso, Juan C;
Graumann, Peter L;
Ayora, Silvia

Publication type:

Article

Determinants of heritable gene silencing for KRAB-dCas9 + DNMT3 and Ezh2-dCas9 + DNMT3 hit-and-run epigenome editing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3239, doi. 10.1093/nar/gkac123

By:

O'Geen, Henriette;
Tomkova, Marketa;
Combs, Jacquelyn A;
Tilley, Emma K;
Segal, David J

Publication type:

Article

MYC oncoprotein directly interacts with its chromatin cofactor PNUTS to recruit PP1 phosphatase.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3505, doi. 10.1093/nar/gkac138

By:

Wei, Yong;
Redel, Cornelia;
Ahlner, Alexandra;
Lemak, Alexander;
Johansson-Åkhe, Isak;
Houliston, Scott;
Kenney, Tristan M G;
Tamachi, Aaliya;
Morad, Vivian;
Duan, Shili;
Andrews, David W;
Wallner, Björn;
Sunnerhagen, Maria;
Arrowsmith, Cheryl H;
Penn, Linda Z

Publication type:

Article

CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3096, doi. 10.1093/nar/gkac114

By:

Ghosh, Souvik;
Ataman, Meric;
Bak, Maciej;
Börsch, Anastasiya;
Schmidt, Alexander;
Buczak, Katarzyna;
Martin, Georges;
Dimitriades, Beatrice;
Herrmann, Christina J;
Kanitz, Alexander;
Zavolan, Mihaela

Publication type:

Article

Comparison of genome architecture at two stages of male germline cell differentiation in Drosophila.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3203, doi. 10.1093/nar/gkac109

By:

Ilyin, Artem A;
Kononkova, Anna D;
Golova, Anastasia V;
Shloma, Viktor V;
Olenkina, Oxana M;
Nenasheva, Valentina V;
Abramov, Yuri A;
Kotov, Alexei A;
Maksimov, Daniil A;
Laktionov, Petr P;
Pindyurin, Alexey V;
Galitsyna, Aleksandra A;
Ulianov, Sergey V;
Khrameeva, Ekaterina E;
Gelfand, Mikhail S;
Belyakin, Stepan N;
Razin, Sergey V;
Shevelyov, Yuri Y

Publication type:

Article

Role of the cellular factor CTCF in the regulation of bovine leukemia virus latency and three-dimensional chromatin organization.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3190, doi. 10.1093/nar/gkac107

By:

Bellefroid, Maxime;
Rodari, Anthony;
Galais, Mathilde;
Krijger, Peter H L;
Tjalsma, Sjoerd J D;
Nestola, Lorena;
Plant, Estelle;
Vos, Erica S M;
Cristinelli, Sara;
Van Driessche, Benoit;
Vanhulle, Caroline;
Ait-Ammar, Amina;
Burny, Arsène;
Ciuffi, Angela;
de Laat, Wouter;
Van Lint, Carine

Publication type:

Article

DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3169, doi. 10.1093/nar/gkac089

By:

Chrysanthou, Stephanie;
Tang, Qin;
Lee, Joun;
Taylor, Samuel J;
Zhao, Yilin;
Steidl, Ulrich;
Zheng, Deyou;
Dawlaty, Meelad M

Publication type:

Article

Pathways of thymidine hypermodification.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3001, doi. 10.1093/nar/gkab781

By:

Lee, Yan-Jiun;
Dai, Nan;
Müller, Stephanie I;
Guan, Chudi;
Parker, Mackenzie J;
Fraser, Morgan E;
Walsh, Shannon E;
Sridar, Janani;
Mulholland, Andrew;
Nayak, Krutika;
Sun, Zhiyi;
Lin, Yu-Cheng;
Comb, Donald G;
Marks, Katherine;
Gonzalez, Reyaz;
Dowling, Daniel P;
Bandarian, Vahe;
Saleh, Lana;
Corrêa, Ivan R;
Weigele, Peter R

Publication type:

Article

GIP: an open-source computational pipeline for mapping genomic instability from protists to cancer cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. e36, doi. 10.1093/nar/gkab1237

By:

Späth, Gerald F;
Bussotti, Giovanni

Publication type:

Article

HiCRes: a computational method to estimate and predict the genomic resolution of Hi-C libraries.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. e35, doi. 10.1093/nar/gkab1235

By:

Marchal, Claire;
Singh, Nivedita;
Corso-Díaz, Ximena;
Swaroop, Anand

Publication type:

Article

Deviation from baseline mutation burden provides powerful and robust rare-variants association test for complex diseases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. e34, doi. 10.1093/nar/gkab1234

By:

Jiang, Lin;
Jiang, Hui;
Dai, Sheng;
Chen, Ying;
Song, Youqiang;
Tang, Clara Sze-Man;
Pang, Shirley Yin-Yu;
Ho, Shu-Leong;
Wang, Binbin;
Garcia-Barcelo, Maria-Mercedes;
Tam, Paul Kwong-Hang;
Cherny, Stacey S;
Li, Mulin Jun;
Sham, Pak Chung;
Li, Miaoxin

Publication type:

Article