Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 21

Results: 47

Human histone pre-mRNA assembles histone or canonical mRNA-processing complexes by overlapping 3′-end sequence elements.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12425, doi. 10.1093/nar/gkac878

By:

Ielasi, Francesco S;
Ternifi, Sara;
Fontaine, Emeline;
Iuso, Domenico;
Couté, Yohann;
Palencia, Andrés

Publication type:

Article

Single-cell gene regulation network inference by large-scale data integration.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. e126, doi. 10.1093/nar/gkac819

By:

Dong, Xin;
Tang, Ke;
Xu, Yunfan;
Wei, Hailin;
Han, Tong;
Wang, Chenfei

Publication type:

Article

Probing protein ubiquitination in live cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. e125, doi. 10.1093/nar/gkac805

By:

Qin, Weihua;
Steinek, Clemens;
Kolobynina, Ksenia;
Forné, Ignasi;
Imhof, Axel;
Cardoso, M Cristina;
Leonhardt, Heinrich

Publication type:

Article

Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. e124, doi. 10.1093/nar/gkac794

By:

Han, Shunhua;
Dias, Guilherme B;
Basting, Preston J;
Viswanatha, Raghuvir;
Perrimon, Norbert;
Bergman, Casey M

Publication type:

Article

Correction to 'TGS1 impacts snRNA 3′-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration'.

Published in:: 2022
Publication type:: Correction Notice

Accurate in silico confirmation of rare copy number variant calls from exome sequencing data using transfer learning.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. e123, doi. 10.1093/nar/gkac788

By:

Tan, Renjie;
Shen, Yufeng

Publication type:

Article

Density-based detection of cell transition states to construct disparate and bifurcating trajectories.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. e122, doi. 10.1093/nar/gkac785

By:

Lan, Tian;
Hutvagner, Gyorgy;
Zhang, Xuan;
Liu, Tao;
Wong, Limsoon;
Li, Jinyan

Publication type:

Article

Integrated analysis of multimodal single-cell data with structural similarity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. e121, doi. 10.1093/nar/gkac781

By:

Cao, Yingxin;
Fu, Laiyi;
Wu, Jie;
Peng, Qinke;
Nie, Qing;
Zhang, Jing;
Xie, Xiaohui

Publication type:

Article

Correction to 'DIS3L2 and LSm proteins are involved in the surveillance of Sm ring-deficient snRNAs'.

Published in:: 2022
Publication type:: Correction Notice

YY1 safeguard multidimensional epigenetic landscape associated with extended pluripotency.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12019, doi. 10.1093/nar/gkac230

By:

Dong, Xiaotao;
Guo, Rong;
Ji, Tianrong;
Zhang, Jie;
Xu, Jun;
Li, Yaoyi;
Sheng, Yingliang;
Wang, Yuxiang;
Fang, Ke;
Wen, Yulin;
Liu, Bei;
Hu, Gongcheng;
Deng, Hongkui;
Yao, Hongjie

Publication type:

Article

Correction to 'EPIMUTESTR: a nearest neighbor machine learning approach to predict cancer driver genes from the evolutionary action of coding variants'.

Published in:: 2022
Publication type:: Correction Notice

Expression of concern on 'COUP-TF interacting protein 2 represses the initial phase of HIV-1 gene transcription in human microglial cells'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 21, p. 12600, doi. 10.1093/nar/gkac1167
Publication type:: Article

Editor's note to 'phospho-epitope binding by the BRCT domains of hPTIP controls multiple aspects of the cellular response to DNA damage'.

Published in:: 2022
Publication type:: Letter to the Editor

TGS1 impacts snRNA 3′-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12400, doi. 10.1093/nar/gkac659

By:

Chen, Lu;
Roake, Caitlin M;
Maccallini, Paolo;
Bavasso, Francesca;
Dehghannasiri, Roozbeh;
Santonicola, Pamela;
Mendoza-Ferreira, Natalia;
Scatolini, Livia;
Rizzuti, Ludovico;
Esposito, Alessandro;
Gallotta, Ivan;
Francia, Sofia;
Cacchione, Stefano;
Galati, Alessandra;
Palumbo, Valeria;
Kobin, Marie A;
Tartaglia, Gian Gaetano;
Colantoni, Alessio;
Proietti, Gabriele;
Wu, Yunming

Publication type:

Article

PARG and BRCA1–BARD1 cooperative function regulates DNA repair pathway choice during gametogenesis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12291, doi. 10.1093/nar/gkac1153

By:

Trivedi, Shalini;
Blazícková, Jitka;
Silva, Nicola

Publication type:

Article

Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12131, doi. 10.1093/nar/gkac1143

By:

Castro-Mondragon, Jaime A;
Aure, Miriam Ragle;
Lingjærde, Ole Christian;
Langerød, Anita;
Martens, John W M;
Børresen-Dale, Anne-Lise;
Kristensen, Vessela N;
Mathelier, Anthony

Publication type:

Article

Protection of the human gene research literature from contract cheating organizations known as research paper mills.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12058, doi. 10.1093/nar/gkac1139

By:

Byrne, Jennifer A;
Park, Yasunori;
Richardson, Reese A K;
Pathmendra, Pranujan;
Sun, Mengyi;
Stoeger, Thomas

Publication type:

Article

Crystal structure of a pre-chemistry viral RNA-dependent RNA polymerase suggests participation of two basic residues in catalysis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12389, doi. 10.1093/nar/gkac1133

By:

Li, Rui;
Wang, Meihua;
Gong, Peng

Publication type:

Article

Cells with stochastically increased methyltransferase to restriction endonuclease ratio provide an entry for bacteriophage into protected cell population.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12355, doi. 10.1093/nar/gkac1124

By:

Kirillov, Alexander;
Morozova, Natalia;
Kozlova, Svetlana;
Polinovskaya, Vasilisa;
Smirnov, Sergey;
Khodorkovskii, Mikhail;
Zeng, Lanying;
Ispolatov, Yaroslav;
Severinov, Konstantin

Publication type:

Article

RNA-binding protein RBP33 dampens non-productive transcription in trypanosomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12251, doi. 10.1093/nar/gkac1123

By:

Gómez-Liñán, Claudia;
Gómez-Díaz, Elena;
Ceballos-Pérez, Gloria;
Fernández-Moya, Sandra M;
Estévez, Antonio M

Publication type:

Article

5-Methyl-cytosine stabilizes DNA but hinders DNA hybridization revealed by magnetic tweezers and simulations.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12344, doi. 10.1093/nar/gkac1122

By:

Zhao, Xiao-Cong;
Dong, Hai-Long;
Li, Xiao-Lu;
Yang, Hong-Yu;
Chen, Xue-Feng;
Dai, Liang;
Wu, Wen-Qiang;
Tan, Zhi-Jie;
Zhang, Xing-Hua

Publication type:

Article

Competition for DNA binding between the genome protector replication protein A and the genome modifying APOBEC3 single-stranded DNA deaminases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12039, doi. 10.1093/nar/gkac1121

By:

Wong, Lai;
Sami, Alina;
Chelico, Linda

Publication type:

Article

Implementing re-configurable biological computation with distributed multicellular consortia.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12578, doi. 10.1093/nar/gkac1120

By:

Canadell, David;
Ortiz-Vaquerizas, Nicolás;
Mogas-Diez, Sira;
de Nadal, Eulàlia;
Macia, Javier;
Posas, Francesc

Publication type:

Article

KLF4 inhibits early neural differentiation of ESCs by coordinating specific 3D chromatin structure.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12235, doi. 10.1093/nar/gkac1118

By:

Bi, Jinfang;
Wang, Wenbin;
Zhang, Meng;
Zhang, Baoying;
Liu, Man;
Su, Guangsong;
Chen, Fuquan;
Chen, Bohan;
Shi, Tengfei;
Zheng, Yaoqiang;
Zhao, Xueyuan;
Zhao, Zhongfang;
Shi, Jiandang;
Li, Peng;
Zhang, Lei;
Lu, Wange

Publication type:

Article

DDX17 helicase promotes resolution of R-loop-mediated transcription–replication conflicts in human cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12274, doi. 10.1093/nar/gkac1116

By:

Boleslavska, Barbora;
Oravetzova, Anna;
Shukla, Kaustubh;
Nascakova, Zuzana;
Ibini, Oluwakemi Ngozi;
Hasanova, Zdenka;
Andrs, Martin;
Kanagaraj, Radhakrishnan;
Dobrovolna, Jana;
Janscak, Pavel

Publication type:

Article

Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12309, doi. 10.1093/nar/gkac1115

By:

Rabanal, Fernando A;
Gräff, Maike;
Lanz, Christa;
Fritschi, Katrin;
Llaca, Victor;
Lang, Michelle;
Carbonell-Bejerano, Pablo;
Henderson, Ian;
Weigel, Detlef

Publication type:

Article

TERRA regulates DNA G-quadruplex formation and ATRX recruitment to chromatin.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12217, doi. 10.1093/nar/gkac1114

By:

Tsai, Ru-Xuan;
Fang, Kuo-Chen;
Yang, Po-Cheng;
Hsieh, Yu-Hung;
Chiang, I-Tien;
Chen, Yunfei;
Lee, Hun-Goo;
Lee, Jeannie T;
Chu, Hsueh-Ping Catherine

Publication type:

Article

Displacement and dissociation of oligonucleotides during DNA hairpin closure under strain.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12082, doi. 10.1093/nar/gkac1113

By:

Ding, Fangyuan;
Cocco, Simona;
Raj, Saurabh;
Manosas, Maria;
Nguyen, Thao Thi Thu;
Spiering, Michelle M;
Bensimon, David;
Allemand, Jean-François;
Croquette, Vincent

Publication type:

Article

Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12558, doi. 10.1093/nar/gkac1103

By:

Schmitz, Claus;
Madej, Mariusz;
Nowakowska, Zuzanna;
Cuppari, Anna;
Jacula, Anna;
Ksiazek, Miroslaw;
Mikruta, Katarzyna;
Wisniewski, Jerzy;
Pudelko-Malik, Natalia;
Saran, Anshu;
Zeytuni, Natalie;
Mlynarz, Piotr;
Lamont, Richard J;
Usón, Isabel;
Siksnys, Virginijus;
Potempa, Jan;
Solà, Maria

Publication type:

Article

Recognition of 5-methyl-CG and CG base pairs in duplex DNA with high stability using antiparallel-type triplex-forming oligonucleotides with 2-guanidinoethyl-2′-deoxynebularine.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12071, doi. 10.1093/nar/gkac1110

By:

Notomi, Ryotaro;
Sasaki, Shigeki;
Taniguchi, Yosuke

Publication type:

Article

scAB detects multiresolution cell states with clinical significance by integrating single-cell genomics and bulk sequencing data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12112, doi. 10.1093/nar/gkac1109

By:

Zhang, Qinran;
Jin, Suoqin;
Zou, Xiufen

Publication type:

Article

common transcriptional mechanism involving R-loop and RNA abasic site regulates an enhancer RNA of APOE.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12497, doi. 10.1093/nar/gkac1107

By:

Watts, Jason A;
Grunseich, Christopher;
Rodriguez, Yesenia;
Liu, Yaojuan;
Li, Dongjun;
Burdick, Joshua T;
Bruzel, Alan;
Crouch, Robert J;
Mahley, Robert W;
Wilson, Samuel H;
Cheung, Vivian G

Publication type:

Article

Spontaneous binding of single-stranded RNAs to RRM proteins visualized by unbiased atomistic simulations with a rescaled RNA force field.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12480, doi. 10.1093/nar/gkac1106

By:

Krepl, Miroslav;
Pokorná, Pavlína;
Mlýnský, Vojtěch;
Stadlbauer, Petr;
Šponer, Jiří

Publication type:

Article

3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12149, doi. 10.1093/nar/gkac1111

By:

Jodkowska, Karolina;
Pancaldi, Vera;
Rigau, Maria;
Almeida, Ricardo;
Fernández-Justel, José M;
Graña-Castro, Osvaldo;
Rodríguez-Acebes, Sara;
Rubio-Camarillo, Miriam;
Carrillo-de Santa Pau, Enrique;
Pisano, David;
Al-Shahrour, Fátima;
Valencia, Alfonso;
Gómez, María;
Méndez, Juan

Publication type:

Article

Structural basis of transcription regulation by CNC family transcription factor, Nrf2.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12543, doi. 10.1093/nar/gkac1102

By:

Sengoku, Toru;
Shiina, Masaaki;
Suzuki, Kae;
Hamada, Keisuke;
Sato, Ko;
Uchiyama, Akiko;
Kobayashi, Shunsuke;
Oguni, Asako;
Itaya, Hayato;
Kasahara, Kota;
Moriwaki, Hirotomo;
Watanabe, Chiduru;
Honma, Teruki;
Okada, Chikako;
Baba, Shiho;
Ohta, Tsutomu;
Motohashi, Hozumi;
Yamamoto, Masayuki;
Ogata, Kazuhiro

Publication type:

Article

Human DNA polymerase α has a strong mutagenic potential at the initial steps of DNA synthesis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12266, doi. 10.1093/nar/gkac1101

By:

Lisova, Alisa E;
Baranovskiy, Andrey G;
Morstadt, Lucia M;
Babayeva, Nigar D;
Tahirov, Tahir H

Publication type:

Article

Enhanced binding of an HU homologue under increased DNA supercoiling preserves chromosome organisation and sustains Streptomyces hyphal growth.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12202, doi. 10.1093/nar/gkac1093

By:

Strzałka, Agnieszka;
Kois-Ostrowska, Agnieszka;
Kędra, Magda;
Łebkowski, Tomasz;
Bieniarz, Grażyna;
Szafran, Marcin J;
Jakimowicz, Dagmara

Publication type:

Article

large-scale benchmark study of tools for the classification of protein-coding and non-coding RNAs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12094, doi. 10.1093/nar/gkac1092

By:

Singh, Dalwinder;
Roy, Joy

Publication type:

Article

NrnA is a 5′-3′ exonuclease that processes short RNA substrates in vivo and in vitro.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12369, doi. 10.1093/nar/gkac1091

By:

Weiss, Cordelia A;
Myers, Tanner M;
Wu, Chih Hao;
Jenkins, Conor;
Sondermann, Holger;
Lee, Vincent T;
Winkler, Wade C

Publication type:

Article

CHD6 promotes broad nucleosome eviction for transcriptional activation in prostate cancer cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12186, doi. 10.1093/nar/gkac1090

By:

Zhao, Dongyu;
Zhang, Min;
Huang, Shaodong;
Liu, Qi;
Zhu, Sen;
Li, Yanqiang;
Jiang, Weihua;
Kiss, Daniel L;
Cao, Qi;
Zhang, Lili;
Chen, Kaifu

Publication type:

Article

RNAi screen of RNA helicases identifies eIF4A3 as a regulator of embryonic stem cell identity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12462, doi. 10.1093/nar/gkac1084

By:

Li, Dan;
Yang, Jihong;
Malik, Vikas;
Huang, Yuting;
Huang, Xin;
Zhou, Hongwei;
Wang, Jianlong

Publication type:

Article

Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12527, doi. 10.1093/nar/gkac1082

By:

Hata, Keiichi;
Kobayashi, Naohiro;
Sugimura, Keita;
Qin, Weihua;
Haxholli, Deis;
Chiba, Yoshie;
Yoshimi, Sae;
Hayashi, Gosuke;
Onoda, Hiroki;
Ikegami, Takahisa;
Mulholland, Christopher B;
Nishiyama, Atsuya;
Nakanishi, Makoto;
Leonhardt, Heinrich;
Konuma, Tsuyoshi;
Arita, Kyohei

Publication type:

Article

B. subtilis Rok protein is an atypical H-NS-like protein irresponsive to physico-chemical cues.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12166, doi. 10.1093/nar/gkac1064

By:

Erkelens, Amanda M;
Qin, Liang;
van Erp, Bert;
Miguel-Arribas, Andrés;
Abia, David;
Keek, Helena G J;
Markus, Dorijn;
Cajili, Marc K M;
Schwab, Samuel;
Meijer, Wilfried J J;
Dame, Remus T

Publication type:

Article

SUMO conjugation regulates the activity of the Integrator complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12444, doi. 10.1093/nar/gkac1055

By:

Bragado, Laureano;
Magalnik, Melina;
Mammi, Pablo;
Romero, Agustín;
Gaioli, Nicolás;
Pozzi, Berta;
Srebrow, Anabella

Publication type:

Article

Structure of Escherichia coli heat shock protein Hsp15 in complex with the ribosomal 50S subunit bearing peptidyl-tRNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12515, doi. 10.1093/nar/gkac1035

By:

Safdari, Haaris A;
Kasvandik, Sergo;
Polte, Christine;
Ignatova, Zoya;
Tenson, Tanel;
Wilson, Daniel N

Publication type:

Article

Deciphering RNA G-quadruplex function during the early steps of HIV-1 infection.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12328, doi. 10.1093/nar/gkac1030

By:

Amrane, Samir;
Jaubert, Chloé;
Bedrat, Amina;
Rundstadler, Tiffany;
Recordon-Pinson, Patricia;
Aknin, Cindy;
Guédin, Aurore;
De Rache, Aurore;
Bartolucci, Laura;
Diene, Ibra;
Lemoine, Frédéric;
Gascuel, Olivier;
Pratviel, Geneviève;
Mergny, Jean-Louis;
Andreola, Marie-Line

Publication type:

Article

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 21, p. 12001, doi. 10.1093/nar/gkac102

By:

Cheng, Luyi;
White, Elise N;
Brandt, Naomi L;
Yu, Angela M;
Chen, Alan A;
Lucks, Julius B

Publication type:

Article