Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 20

Results: 50

Immunoglobulin somatic hypermutation in a defined biochemical system recapitulates affinity maturation and permits antibody optimization.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11738, doi. 10.1093/nar/gkac995

By:

Jeong, Soo Lim;
Zhang, Hongyu;
Yamaki, Shanni;
Yang, Chenyu;
McKemy, David D;
Lieber, Michael R;
Pham, Phuong;
Goodman, Myron F

Publication type:

Article

Increased chromatin accessibility facilitates intron retention in specific cell differentiation states.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11563, doi. 10.1093/nar/gkac994

By:

Petrova, Veronika;
Song, Renhua;
Consortium, DEEP;
Nordström, Karl J V;
Walter, Jörn;
Wong, Justin J L;
Armstrong, Nicola J;
Rasko, John E J;
Schmitz, Ulf

Publication type:

Article

Chromatin accessibility-based characterisation of brain gene regulatory networks in three distinct honey bee polyphenisms.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11550, doi. 10.1093/nar/gkac992

By:

Lowe, Robert;
Wojciechowski, Marek;
Ellis, Nancy;
Hurd, Paul J

Publication type:

Article

forward genetic screen in C. elegans identifies conserved residues of spliceosomal proteins PRP8 and SNRNP200/BRR2 with a role in maintaining 5′ splice site identity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11834, doi. 10.1093/nar/gkac991

By:

Cartwright-Acar, Catiana H;
Osterhoudt, Kenneth;
Suzuki, Jessie M N G L;
Gomez, Destiny R;
Katzman, Sol;
Zahler, Alan M

Publication type:

Article

Deep learning-assisted genome-wide characterization of massively parallel reporter assays.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11442, doi. 10.1093/nar/gkac990

By:

Lu, Fred;
Sossin, Aaron;
Abell, Nathan;
Montgomery, Stephen B;
He, Zihuai

Publication type:

Article

Structural insights into target DNA recognition and cleavage by the CRISPR-Cas12c1 system.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11820, doi. 10.1093/nar/gkac987

By:

Zhang, Bo;
Lin, Jinying;
Perčulija, Vanja;
Li, Yu;
Lu, Qiuhua;
Chen, Jing;
Ouyang, Songying

Publication type:

Article

proto-telomere is elongated by telomerase in a shelterin-dependent manner in quiescent fission yeast cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11682, doi. 10.1093/nar/gkac986

By:

Vaurs, Mélina;
Audry, Julien;
Runge, Kurt W;
Géli, Vincent;
Coulon, Stéphane

Publication type:

Article

Functional characterization of diverse type I-F CRISPR-associated transposons.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11670, doi. 10.1093/nar/gkac985

By:

Roberts, Avery;
Nethery, Matthew A;
Barrangou, Rodolphe

Publication type:

Article

eIF3j inhibits translation of a subset of circular RNAs in eukaryotic cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11529, doi. 10.1093/nar/gkac980

By:

Song, Zhenxing;
Lin, Jiamei;
Su, Rui;
Ji, Yu;
Jia, Ruirui;
Li, Shi;
Shan, Ge;
Huang, Chuan

Publication type:

Article

nucleoplasmic phase of pre-40S formation prior to nuclear export.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11924, doi. 10.1093/nar/gkac961

By:

Cheng, Jingdong;
Lau, Benjamin;
Thoms, Matthias;
Ameismeier, Michael;
Berninghausen, Otto;
Hurt, Ed;
Beckmann, Roland

Publication type:

Article

KLF9 and KLF13 transcription factors boost myelin gene expression in oligodendrocytes as partners of SOX10 and MYRF.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11509, doi. 10.1093/nar/gkac953

By:

Bernhardt, Celine;
Sock, Elisabeth;
Fröb, Franziska;
Hillgärtner, Simone;
Nemer, Mona;
Wegner, Michael

Publication type:

Article

rG4detector, a novel RNA G-quadruplex predictor, uncovers their impact on stress granule formation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11426, doi. 10.1093/nar/gkac950

By:

Turner, Maor;
Danino, Yehuda M;
Barshai, Mira;
Yacovzada, Nancy S;
Cohen, Yahel;
Olender, Tsviya;
Rotkopf, Ron;
Monchaud, David;
Hornstein, Eran;
Orenstein, Yaron

Publication type:

Article

PARP1 proximity proteomics reveals interaction partners at stressed replication forks.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11600, doi. 10.1093/nar/gkac948

By:

Mosler, Thorsten;
Baymaz, H Irem;
Gräf, Justus F;
Mikicic, Ivan;
Blattner, Georges;
Bartlett, Edward;
Ostermaier, Matthias;
Piccinno, Rossana;
Yang, Jiwen;
Voigt, Andrea;
Gatti, Marco;
Pellegrino, Stefania;
Altmeyer, Matthias;
Luck, Katja;
Ahel, Ivan;
Roukos, Vassilis;
Beli, Petra

Publication type:

Article

Correction to 'MirGeneDB 2.1: toward a complete sampling of all major animal phyla'.

Published in:: 2022
Publication type:: Correction Notice

Type I arginine methyltransferases are intervention points to unveil the oncogenic Epstein-Barr virus to the immune system.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11799, doi. 10.1093/nar/gkac915

By:

Angrand, Gaelle;
Quillévéré, Alicia;
Loaëc, Nadège;
Dinh, Van-Trang;
Le Sénéchal, Ronan;
Chennoufi, Rahima;
Duchambon, Patricia;
Keruzoré, Marc;
Martins, Rodrigo Prado;
Teulade-Fichou, Marie-Paule;
Fåhraeus, Robin;
Blondel, Marc

Publication type:

Article

toolkit for the identification of NEAT1_2/paraspeckle modulators.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. e119, doi. 10.1093/nar/gkac771

By:

An, Haiyan;
Elvers, Karen T;
Gillespie, Jason A;
Jones, Kimberley;
Atack, John R;
Grubisha, Olivera;
Shelkovnikova, Tatyana A

Publication type:

Article

Estrogen regulates divergent transcriptional and epigenetic cell states in breast cancer.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11492, doi. 10.1093/nar/gkac908

By:

Ors, Aysegul;
Chitsazan, Alex Daniel;
Doe, Aaron Reid;
Mulqueen, Ryan M;
Ak, Cigdem;
Wen, Yahong;
Haverlack, Syber;
Handu, Mithila;
Naldiga, Spandana;
Saldivar, Joshua C;
Mohammed, Hisham

Publication type:

Article

SMG6 localizes to the chromatoid body and shapes the male germ cell transcriptome to drive spermatogenesis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11470, doi. 10.1093/nar/gkac900

By:

Lehtiniemi, Tiina;
Bourgery, Matthieu;
Ma, Lin;
Ahmedani, Ammar;
Mäkelä, Margareeta;
Asteljoki, Juho;
Olotu, Opeyemi;
Laasanen, Samuli;
Zhang, Fu-Ping;
Tan, Kun;
Chousal, Jennifer N;
Burow, Dana;
Koskinen, Satu;
Laiho, Asta;
Elo, Laura L;
Chalmel, Frédéric;
Wilkinson, Miles F;
Kotaja, Noora

Publication type:

Article

PAM-free CRISPR/Cas12a ultra-specific activation mode based on toehold-mediated strand displacement and branch migration.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11727, doi. 10.1093/nar/gkac886

By:

Wu, You;
Luo, Wang;
Weng, Zhi;
Guo, Yongcan;
Yu, Hongyan;
Zhao, Rong;
Zhang, Li;
Zhao, Jie;
Bai, Dan;
Zhou, Xi;
Song, Lin;
Chen, Kena;
Li, Junjie;
Yang, Yujun;
Xie, Guoming

Publication type:

Article

Long-read single-molecule RNA structure sequencing using nanopore.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. e120, doi. 10.1093/nar/gkac775

By:

Bizuayehu, Teshome Tilahun;
Labun, Kornel;
Jakubec, Martin;
Jefimov, Kirill;
Niazi, Adnan Muhammad;
Valen, Eivind

Publication type:

Article

In vitro structural maturation of an early stage pre-40S particle coupled with U3 snoRNA release and central pseudoknot formation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11916, doi. 10.1093/nar/gkac910

By:

Cheng, Jingdong;
La Venuta, Giuseppe;
Lau, Benjamin;
Berninghausen, Otto;
Beckmann, Roland;
Hurt, Ed

Publication type:

Article

sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. e118, doi. 10.1093/nar/gkac764

By:

Lyu, Ruqian;
Tsui, Vanessa;
Crismani, Wayne;
Liu, Ruijie;
Shim, Heejung;
McCarthy, Davis J

Publication type:

Article

High quality mapping of chromatin at or near the nuclear lamina from small numbers of cells reveals cell cycle and developmental changes of chromatin at the nuclear periphery.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. e117, doi. 10.1093/nar/gkac762

By:

Tran, Joseph R;
Zheng, Xiaobin;
Adam, Stephen A;
Goldman, Robert D;
Zheng, Yixian

Publication type:

Article

Accurate measurement of microsatellite length by disrupting its tandem repeat structure.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. e116, doi. 10.1093/nar/gkac723

By:

Wang, Zihua;
Moffitt, Andrea B;
Andrews, Peter;
Wigler, Michael;
Levy, Dan

Publication type:

Article

Synthesis of point-modified mRNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. e115, doi. 10.1093/nar/gkac719

By:

Hertler, Jasmin;
Slama, Kaouthar;
Schober, Benedikt;
Özrendeci, Zeynep;
Marchand, Virginie;
Motorin, Yuri;
Helm, Mark

Publication type:

Article

Enhanced exon skipping and prolonged dystrophin restoration achieved by TfR1-targeted delivery of antisense oligonucleotide using FORCE conjugation in mdx mice.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11401, doi. 10.1093/nar/gkac641

By:

Desjardins, Cody A;
Yao, Monica;
Hall, John;
O'Donnell, Emma;
Venkatesan, Reshmii;
Spring, Sean;
Wen, Aiyun;
Hsia, Nelson;
Shen, Peiyi;
Russo, Ryan;
Lan, Bo;
Picariello, Tyler;
Tang, Kim;
Weeden, Timothy;
Zanotti, Stefano;
Subramanian, Romesh;
Ibraghimov-Beskrovnaya, Oxana

Publication type:

Article

Correction to 'Clerocidin interacts with the cleavage complex of Streptococcus pneumoniae topoisomerase IV to induce selective irreversible DNA damage'.

Published in:: 2022
Publication type:: Correction Notice

Expression of concern on 'glucocorticoid-induced leucine zipper (GILZ)/NF-κB interaction: role of GILZ homo-dimerization and C-terminal domain'.

Published in:: 2022
Publication type:: Letter to the Editor

Correction to 'Gene-specific mutagenesis enables rapid continuous evolution of enzymes in vivo'.

Published in:: 2022
Publication type:: Correction Notice

Correction to 'Heritable pattern of oxidized DNA base repair coincides with pre-targeting of repair complexes to open chromatin'.

Published in:: 2022
Publication type:: Correction Notice

Editor's Note to 'Autoregulatory circuit of human rpL3 expression requires hnRNP H1, NPM and KHSRP'.

Published in:: 2022
Publication type:: Abstract

Correction to 'Origin of life: protoribosome forms peptide bonds and links RNA and protein dominated worlds'.

Published in:: 2022
Publication type:: Correction Notice

Structural and dynamic basis of DNA capture and translocation by mitochondrial Twinkle helicase.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11965, doi. 10.1093/nar/gkac1089

By:

Li, Zhuo;
Kaur, Parminder;
Lo, Chen-Yu;
Chopra, Neil;
Smith, Jamie;
Wang, Hong;
Gao, Yang

Publication type:

Article

High-affinity binding at quadruplex–duplex junctions: rather the rule than the exception.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11948, doi. 10.1093/nar/gkac1088

By:

Vianney, Yoanes Maria;
Weisz, Klaus

Publication type:

Article

Occurrence and stability of anion–π interactions between phosphate and nucleobases in functional RNA molecules.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11455, doi. 10.1093/nar/gkac1081

By:

Chawla, Mohit;
Kalra, Kanav;
Cao, Zhen;
Cavallo, Luigi;
Oliva, Romina

Publication type:

Article

Ribosomal RNA operons define a central functional compartment in the Streptomyces chromosome.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11654, doi. 10.1093/nar/gkac1076

By:

Lorenzi, Jean-Noël;
Thibessard, Annabelle;
Lioy, Virginia S;
Boccard, Frédéric;
Leblond, Pierre;
Pernodet, Jean-Luc;
Bury-Moné, Stéphanie

Publication type:

Article

Correction to 'Human Thg1 displays tRNA-inducible GTPase activity'.

Published in:: 2022
Publication type:: Correction Notice

Enteroviral 2C protein is an RNA-stimulated ATPase and uses a two-step mechanism for binding to RNA and ATP.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11775, doi. 10.1093/nar/gkac1054

By:

Yeager, Calvin;
Carter, Griffin;
Gohara, David W;
Yennawar, Neela H;
Enemark, Eric J;
Arnold, Jamie J;
Cameron, Craig E

Publication type:

Article

initiation factor 3 (IF3) residues interacting with initiator tRNA elbow modulate the fidelity of translation initiation and growth fitness in Escherichia coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11712, doi. 10.1093/nar/gkac1053

By:

Singh, Jitendra;
Mishra, Rishi Kumar;
Ayyub, Shreya Ahana;
Hussain, Tanweer;
Varshney, Umesh

Publication type:

Article

Phosphorylation of the smooth muscle master splicing regulator RBPMS regulates its splicing activity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11895, doi. 10.1093/nar/gkac1048

By:

Barnhart, Michael D;
Yang, Yi;
Nakagaki-Silva, Erick E;
Hammond, Thomas H;
Pizzinga, Mariavittoria;
Gooding, Clare;
Stott, Katherine;
Smith, Christopher W J

Publication type:

Article

Glucocorticoids unmask silent non-coding genetic risk variants for common diseases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11635, doi. 10.1093/nar/gkac1045

By:

Nguyen, Thanh Thanh L;
Gao, Huanyao;
Liu, Duan;
Philips, Trudy Janice;
Ye, Zhenqing;
Lee, Jeong-Heon;
Shi, Geng-xian;
Copenhaver, Kaleigh;
Zhang, Lingxin;
Wei, Lixuan;
Yu, Jia;
Zhang, Huan;
Barath, Abhijeet;
Luong, Maggie;
Zhang, Cheng;
Gaspar-Maia, Alexandre;
Li, Hu;
Wang, Liewei;
Ordog, Tamas;
Weinshilboum, Richard M

Publication type:

Article

Engineered multiple translation initiation sites: a novel tool to enhance protein production in Bacillus licheniformis and other industrially relevant bacteria.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11979, doi. 10.1093/nar/gkac1039

By:

Zhang, Manyu;
Song, Jing;
Xiao, Jun;
Jin, Jingjie;
Nomura, Christopher T;
Chen, Shouwen;
Wang, Qin

Publication type:

Article

updated definition of V(D)J recombination signal sequences revealed by high-throughput recombination assays.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11696, doi. 10.1093/nar/gkac1038

By:

Hoolehan, Walker;
Harris, Justin C;
Byrum, Jennifer N;
Simpson, Destiny A;
Rodgers, Karla K

Publication type:

Article

Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11580, doi. 10.1093/nar/gkac1034

By:

Takeuchi, Chikara;
Yokoshi, Moe;
Kondo, Shu;
Shibuya, Aoi;
Saito, Kuniaki;
Fukaya, Takashi;
Siomi, Haruhiko;
Iwasaki, Yuka W

Publication type:

Article

Selective degradation of tRNASer(AGY) is the primary driver for mitochondrial seryl-tRNA synthetase-related disease.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11755, doi. 10.1093/nar/gkac1028

By:

Yu, Tingting;
Zhang, Yi;
Zheng, Wen-Qiang;
Wu, Siqi;
Li, Guoqiang;
Zhang, Yong;
Li, Niu;
Yao, Ruen;
Fang, Pengfei;
Wang, Jian;
Zhou, Xiao-Long

Publication type:

Article

METTL3-mediated m6A modification stabilizes TERRA and maintains telomere stability.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11619, doi. 10.1093/nar/gkac1027

By:

Chen, Liping;
Zhang, Canfeng;
Ma, Wenbin;
Huang, Junjiu;
Zhao, Yong;
Liu, Haiying

Publication type:

Article

UPF1 mutants with intact ATPase but deficient helicase activities promote efficient nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11876, doi. 10.1093/nar/gkac1026

By:

Chapman, Joseph H;
Craig, Jonathan M;
Wang, Clara D;
Gundlach, Jens H;
Neuman, Keir C;
Hogg, J Robert

Publication type:

Article

stationary phase-specific sRNA FimR2 is a multifunctional regulator of bacterial motility, biofilm formation and virulence.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11858, doi. 10.1093/nar/gkac1025

By:

Raad, Nicole;
Tandon, Disha;
Hapfelmeier, Siegfried;
Polacek, Norbert

Publication type:

Article

Structural basis of direct and inverted DNA sequence repeat recognition by helix–turn–helix transcription factors.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11938, doi. 10.1093/nar/gkac1024

By:

Fernandez-Lopez, Raul;
Ruiz, Raul;
del Campo, Irene;
Gonzalez-Montes, Lorena;
Boer, D Roeland;
de la Cruz, Fernando;
Moncalian, Gabriel

Publication type:

Article

Amino-acyl tXNA as inhibitors or amino acid donors in peptide synthesis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 20, p. 11415, doi. 10.1093/nar/gkac1023

By:

Rietmeyer, Lauriane;
Li De La Sierra-Gallay, Inès;
Schepers, Guy;
Dorchêne, Delphine;
Iannazzo, Laura;
Patin, Delphine;
Touzé, Thierry;
van Tilbeurgh, Herman;
Herdewijn, Piet;
Ethève-Quelquejeu, Mélanie;
Fonvielle, Matthieu

Publication type:

Article