Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 18

Results: 27

Long noncoding RNA lncMREF promotes myogenic differentiation and muscle regeneration by interacting with the Smarca5/p300 complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10733, doi. 10.1093/nar/gkac854

By:

Wei Lv;
Wei Jiang;
Hongmei Luo;
Qian Tong;
Xiaoyu Niu;
Xiao Liu;
Yang Miao, `;
Jingnan Wang;
Yiwen Guo;
Jianan Li;
Xizhen Zhan;
Yunqing Hou;
Yaxin Peng;
Jian Wang;
Shuhong Zhao;
Zaiyan Xu;
Bo Zuo

Publication type:

Article

The novel type II toxin-antitoxin PacTA modulates Pseudomonas aeruginosa iron homeostasis by obstructing the DNA-binding activity of Fur.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10586, doi. 10.1093/nar/gkac867

By:

Yingjie Song;
Siping Zhang;
Zirui Ye;
Yongyan Song;
Lin Chen;
Aiping Tong;
Yongxing He;
Rui Bao

Publication type:

Article

rRNA expansion segment 7 in eukaryotes: from Signature Fold to tentacles.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10717, doi. 10.1093/nar/gkac844

By:

Biesiada, Marcin;
Hu, Michael Y.;
Williams, Loren Dean;
Purzycka, Katarzyna J.;
Petrov, Anton S.

Publication type:

Article

APE1 assembles biomolecular condensates to promote the ATR–Chk1 DNA damage response in nucleolus.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10503, doi. 10.1093/nar/gkac853

By:

Li, Jia;
Zhao, Haichao;
McMahon, Anne;
Yan, Shan

Publication type:

Article

DDX17 is required for efficient DSB repair at DNA:RNA hybrid deficient loci.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10487, doi. 10.1093/nar/gkac843

By:

Bader, Aldo S;
Luessing, Janna;
Hawley, Ben R;
Skalka, George L;
Lu, Wei-Ting;
Lowndes, Noel F;
Bushell, Martin

Publication type:

Article

Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10290, doi. 10.1093/nar/gkac830

By:

Huang, Daiyun;
Chen, Kunqi;
Song, Bowen;
Wei, Zhen;
Su, Jionglong;
Coenen, Frans;
de Magalhães, João Pedro;
Rigden, Daniel J;
Meng, Jia

Publication type:

Article

TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10399, doi. 10.1093/nar/gkac826

By:

Diego-Martin, Borja;
Pérez-Alemany, Jaime;
Candela-Ferre, Joan;
Corbalán-Acedo, Antonio;
Pereyra, Juan;
Alabadí, David;
Jami-Alahmadi, Yasaman;
Wohlschlegel, James;
Gallego-Bartolomé, Javier

Publication type:

Article

iPro-WAEL: a comprehensive and robust framework for identifying promoters in multiple species.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10278, doi. 10.1093/nar/gkac824

By:

Zhang, Pengyu;
Zhang, Hongming;
Wu, Hao

Publication type:

Article

Human NOP2/NSUN1 regulates ribosome biogenesis through non-catalytic complex formation with box C/D snoRNPs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10695, doi. 10.1093/nar/gkac817

By:

Liao, Han;
Gaur, Anushri;
McConie, Hunter;
Shekar, Amirtha;
Wang, Karen;
Chang, Jeffrey T;
Breton, Ghislain;
Denicourt, Catherine

Publication type:

Article

Switching G-quadruplex to parallel duplex by molecular rotor clustering.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10249, doi. 10.1093/nar/gkac811

By:

Xu, Qiuda;
Yang, Mujing;
Chang, Yun;
Peng, Shuzhen;
Wang, Dandan;
Zhou, Xiaoshun;
Shao, Yong

Publication type:

Article

Hydrazone chemistry-mediated CRISPR/Cas12a system for bacterial analysis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10562, doi. 10.1093/nar/gkac809

By:

Sheng, Anzhi;
Yang, Jingyi;
Tang, Longfei;
Niu, Lili;
Cheng, Liangfen;
Zeng, Yujing;
Chen, Xu;
Zhang, Juan;
Li, Genxi

Publication type:

Article

SIAH2 regulates DNA end resection and replication fork recovery by promoting CtIP ubiquitination.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10469, doi. 10.1093/nar/gkac808

By:

Jeong, Seo-Yeon;
Hariharasudhan, Gurusamy;
Kim, Min-Ji;
Lim, Ji-Yeon;
Jung, Sung Mi;
Choi, Eun-Ji;
Chang, In-Youb;
Kee, Younghoon;
You, Ho Jin;
Lee, Jung-Hee

Publication type:

Article

regulatory network comprising let-7 miRNA and SMUG1 is associated with good prognosis in ER+ breast tumours.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10449, doi. 10.1093/nar/gkac807

By:

Lirussi, Lisa;
Ayyildiz, Dilara;
Liu, Yan;
Montaldo, Nicola P;
Carracedo, Sergio;
Aure, Miriam R;
Jobert, Laure;
Tekpli, Xavier;
Touma, Joel;
Sauer, Torill;
Dalla, Emiliano;
Kristensen, Vessela N;
Geisler, Jürgen;
Piazza, Silvano;
Tell, Gianluca;
Nilsen, Hilde

Publication type:

Article

Phosphorylation of the auxin signaling transcriptional repressor IAA15 by MPKs is required for the suppression of root development under drought stress in Arabidopsis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10544, doi. 10.1093/nar/gkac798

By:

Kim, Sun Ho;
Bahk, Sunghwa;
Nguyen, Nhan Thi;
Pham, Minh Le Anh;
Kadam, Ulhas Sopanrao;
Hong, Jong Chan;
Chung, Woo Sik

Publication type:

Article

Direct hOGG1-Myc interactions inhibit hOGG1 catalytic activity and recruit Myc to its promoters under oxidative stress.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10385, doi. 10.1093/nar/gkac796

By:

Bangalore, Disha M;
Tessmer, Ingrid

Publication type:

Article

Model of abasic site DNA cross-link repair; from the architecture of NEIL3 DNA binding domains to the X-structure model.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10436, doi. 10.1093/nar/gkac793

By:

Huskova, Andrea;
Dinesh, Dhurvas Chandrasekaran;
Srb, Pavel;
Boura, Evzen;
Veverka, Vaclav;
Silhan, Jan

Publication type:

Article

Histone protein surface accessibility dictates direction of RSC-dependent nucleosome mobilization.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10376, doi. 10.1093/nar/gkac790

By:

Bhat, Javeed Ahmad;
Balliano, Angela J;
Hayes, Jeffrey J

Publication type:

Article

mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10264, doi. 10.1093/nar/gkac779

By:

Mikhailova, Alina G;
Mikhailova, Alina A;
Ushakova, Kristina;
Tretiakov, Evgeny O;
Iliushchenko, Dmitrii;
Shamansky, Victor;
Lobanova, Valeria;
Kozenkov, Ivan;
Efimenko, Bogdan;
Yurchenko, Andrey A;
Kozenkova, Elena;
Zdobnov, Evgeny M;
Makeev, Vsevolod;
Yurov, Valerian;
Tanaka, Masashi;
Gostimskaya, Irina;
Fleischmann, Zoe;
Annis, Sofia;
Franco, Melissa;
Wasko, Kevin

Publication type:

Article

Genetic context effects can override canonical cis regulatory elements in Escherichia coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10360, doi. 10.1093/nar/gkac787

By:

Scholz, Scott A;
Lindeboom, Chase D;
Freddolino, Peter L

Publication type:

Article

Negative supercoils regulate meiotic crossover patterns in budding yeast.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10418, doi. 10.1093/nar/gkac786

By:

Tan, Taicong;
Tan, Yingjin;
Wang, Ying;
Yang, Xiao;
Zhai, Binyuan;
Zhang, Shuxian;
Yang, Xuan;
Nie, Hui;
Gao, Jinmin;
Zhou, Jun;
Zhang, Liangran;
Wang, Shunxin

Publication type:

Article

LncRNA-Smad7 mediates cross-talk between Nodal/TGF-β and BMP signaling to regulate cell fate determination of pluripotent and multipotent cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10526, doi. 10.1093/nar/gkac780

By:

Kong, Xiaohui;
Yan, Kun;
Deng, Pujuan;
Fu, Haipeng;
Sun, Hongyao;
Huang, Wenze;
Jiang, Shuangying;
Dai, Junbiao;
Zhang, Qiangfeng Cliff;
Liu, Jun-jie Gogo;
Xi, Qiaoran

Publication type:

Article

Super-enhancer-controlled positive feedback loop BRD4/ERα–RET–ERα promotes ERα-positive breast cancer.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10230, doi. 10.1093/nar/gkac778

By:

Zheng, Zao-zao;
Xia, Lin;
Hu, Guo-sheng;
Liu, Jun-yi;
Hu, Ya-hong;
Chen, Yu-jie;
Peng, Jia-yin;
Zhang, Wen-juan;
Liu, Wen

Publication type:

Article

Thermal stabilisation of the short DNA duplexes by acridine-4-carboxamide derivatives.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10212, doi. 10.1093/nar/gkac777

By:

Kostelansky, Filip;
Miletin, Miroslav;
Havlinova, Zuzana;
Szotakova, Barbora;
Libra, Antonin;
Kucera, Radim;
Novakova, Veronika;
Zimcik, Petr

Publication type:

Article

transcriptional coactivator Eya1 exerts transcriptional repressive activity by interacting with REST corepressors and REST-binding sequences to maintain nephron progenitor identity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10343, doi. 10.1093/nar/gkac760

By:

Li, Jun;
Cheng, Chunming;
Xu, Jinshu;
Zhang, Ting;
Tokat, Bengu;
Dolios, Georgia;
Ramakrishnan, Aarthi;
Shen, Li;
Wang, Rong;
Xu, Pin-Xian

Publication type:

Article

Uncovering translation roadblocks during the development of a synthetic tRNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10201, doi. 10.1093/nar/gkac576

By:

Prabhakar, Arjun;
Krahn, Natalie;
Zhang, Jingji;
Vargas-Rodriguez, Oscar;
Krupkin, Miri;
Fu, Ziao;
Acosta-Reyes, Francisco J;
Ge, Xueliang;
Choi, Junhong;
Crnković, Ana;
Ehrenberg, Måns;
Puglisi, Elisabetta Viani;
Söll, Dieter;
Puglisi, Joseph

Publication type:

Article

OCT4 interprets and enhances nucleosome flexibility.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10311, doi. 10.1093/nar/gkac755

By:

MacCarthy, Caitlin M;
Huertas, Jan;
Ortmeier, Claudia;
vom Bruch, Hermann;
Tan, Daisylyn Senna;
Reinke, Deike;
Sander, Astrid;
Bergbrede, Tim;
Jauch, Ralf;
Schöler, Hans R;
Cojocaru, Vlad

Publication type:

Article

Chromatin transitions triggered by LH density as epigenetic regulators of the genome.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 18, p. 10328, doi. 10.1093/nar/gkac757

By:

Portillo-Ledesma, Stephanie;
Wagley, Meghna;
Schlick, Tamar

Publication type:

Article