Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 17

Results: 43

Crystallographic analysis of engineered polymerases synthesizing phosphonomethylthreosyl nucleic acid.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9663, doi. 10.1093/nar/gkac792

By:

Hajjar, Mohammad;
Chim, Nicholas;
Liu, Chao;
Herdewijn, Piet;
Chaput, John C

Publication type:

Article

Mechanism of protein-primed template-independent DNA synthesis by Abi polymerases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10026, doi. 10.1093/nar/gkac772

By:

Figiel, Małgorzata;
Gapińska, Marta;
Czarnocki-Cieciura, Mariusz;
Zajko, Weronika;
Sroka, Małgorzata;
Skowronek, Krzysztof;
Nowotny, Marcin

Publication type:

Article

Correction to 'Staphylococcal self-loading helicases couple the staircase mechanism with inter domain high flexibility'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 17, p. 10200, doi. 10.1093/nar/gkac818
Publication type:: Article

Formation and removal of 1,N6-dimethyladenosine in mammalian transfer RNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9858, doi. 10.1093/nar/gkac770

By:

You, Xue-Jiao;
Zhang, Shan;
Chen, Juan-Juan;
Tang, Feng;
He, Jingang;
Wang, Jie;
Qi, Chu-Bo;
Feng, Yu-Qi;
Yuan, Bi-Feng

Publication type:

Article

Splicing of branchpoint-distant exons is promoted by Cactin, Tls1 and the ubiquitin-fold-activated Sde2.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10000, doi. 10.1093/nar/gkac769

By:

Anil, Anupa T;
Choudhary, Karan;
Pandian, Rakesh;
Gupta, Praver;
Thakran, Poonam;
Singh, Arashdeep;
Sharma, Monika;
Mishra, Shravan Kumar

Publication type:

Article

Human Thg1 displays tRNA-inducible GTPase activity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10015, doi. 10.1093/nar/gkac768

By:

Antika, Titi Rindi;
Nazilah, Kun Rohmatan;
Lee, Yi-Hsueh;
Lo, Ya-Ting;
Yeh, Chung-Shu;
Yeh, Fu-Lung;
Chang, Tien-Hsien;
Wang, Tzu-Ling;
Wang, Chien-Chia

Publication type:

Article

Allosteric activation of CRISPR-Cas12a requires the concerted movement of the bridge helix and helix 1 of the RuvC II domain.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10153, doi. 10.1093/nar/gkac767

By:

Wörle, Elisabeth;
Newman, Anthony;
D'Silva, Jovita;
Burgio, Gaetan;
Grohmann, Dina

Publication type:

Article

Hybridization kinetics of out-of-equilibrium mixtures of short RNA oligonucleotides.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9647, doi. 10.1093/nar/gkac784

By:

Todisco, Marco;
Szostak, Jack W

Publication type:

Article

high mobility group protein HMG20A cooperates with the histone reader PHF14 to modulate TGFβ and Hippo pathways.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9838, doi. 10.1093/nar/gkac766

By:

Gómez-Marín, Elena;
Posavec-Marjanović, Melanija;
Zarzuela, Laura;
Basurto-Cayuela, Laura;
Guerrero-Martínez, José A;
Arribas, Gonzalo;
Yerbes, Rosario;
Ceballos-Chávez, María;
Rodríguez-Paredes, Manuel;
Tomé, Mercedes;
Durán, Raúl V;
Buschbeck, Marcus;
Reyes, José C

Publication type:

Article

Yeast transcriptional device libraries enable precise synthesis of value-added chemicals from methanol.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10187, doi. 10.1093/nar/gkac765

By:

Zhu, Qiaoyun;
Liu, Qi;
Yao, Chaoying;
Zhang, Yuanxing;
Cai, Menghao

Publication type:

Article

Trypanosoma brucei histones are heavily modified with combinatorial post-translational modifications and mark Pol II transcription start regions with hyperacetylated H2A.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9705, doi. 10.1093/nar/gkac759

By:

Maree, Johannes P;
Tvardovskiy, Andrey;
Ravnsborg, Tina;
Jensen, Ole N;
Rudenko, Gloria;
Patterton, Hugh-G

Publication type:

Article

Double-strand break toxicity is chromatin context independent.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9930, doi. 10.1093/nar/gkac758

By:

Friskes, Anoek;
Koob, Lisa;
Krenning, Lenno;
Severson, Tesa M;
Koeleman, Emma S;
Vergara, Xabier;
Schubert, Michael;
van den Berg, Jeroen;
Evers, Bastiaan;
Manjón, Anna G;
Joosten, Stacey;
Kim, Yongsoo;
Zwart, Wilbert;
Medema, René H

Publication type:

Article

Widespread autogenous mRNA–protein interactions detected by CLIP-seq.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9984, doi. 10.1093/nar/gkac756

By:

Kapral, Thomas H;
Farnhammer, Fiona;
Zhao, Weihao;
Lu, Zhi J;
Zagrovic, Bojan

Publication type:

Article

Three tRNA nuclear exporters in S. cerevisiae: parallel pathways, preferences, and precision.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10140, doi. 10.1093/nar/gkac754

By:

Chatterjee, Kunal;
Marshall, William A;
Hopper, Anita K

Publication type:

Article

Domain function and predicted structure of three heterodimeric endonuclease subunits of RNA editing catalytic complexes in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10123, doi. 10.1093/nar/gkac753

By:

Carnes, Jason;
McDermott, Suzanne M;
Lewis, Isaac;
Tracy, Maxwell;
Stuart, Kenneth

Publication type:

Article

Plant mitochondrial RNA editing factors can perform targeted C-to-U editing of nuclear transcripts in human cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9966, doi. 10.1093/nar/gkac752

By:

Lesch, Elena;
Schilling, Maximilian T;
Brenner, Sarah;
Yang, Yingying;
Gruss, Oliver J;
Knoop, Volker;
Schallenberg-Rüdinger, Mareike

Publication type:

Article

nascent polypeptide-associated complex (NAC) controls translation initiation in cis by recruiting nucleolin to the encoding mRNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10110, doi. 10.1093/nar/gkac751

By:

Zheng, Alice J L;
Thermou, Aikaterini;
Daskalogianni, Chrysoula;
Malbert-Colas, Laurence;
Karakostis, Konstantinos;
Le Sénéchal, Ronan;
Trang Dinh, Van;
Tovar Fernandez, Maria C;
Apcher, Sébastien;
Chen, Sa;
Blondel, Marc;
Fahraeus, Robin

Publication type:

Article

3′ UTR-derived small RNA connecting nitrogen and carbon metabolism in enteric bacteria.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10093, doi. 10.1093/nar/gkac748

By:

Walling, Lauren R;
Kouse, Andrew B;
Shabalina, Svetlana A;
Zhang, Hongen;
Storz, Gisela

Publication type:

Article

EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9814, doi. 10.1093/nar/gkac747

By:

Showpnil, Iftekhar A;
Selich-Anderson, Julia;
Taslim, Cenny;
Boone, Megann A;
Crow, Jesse C;
Theisen, Emily R;
Lessnick, Stephen L

Publication type:

Article

Changes in the architecture and abundance of replication intermediates delineate the chronology of DNA damage tolerance pathways at UV-stalled replication forks in human cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9909, doi. 10.1093/nar/gkac746

By:

Benureau, Yann;
Pouvelle, Caroline;
Dupaigne, Pauline;
Baconnais, Sonia;
Moreira Tavares, Eliana;
Mazón, Gerard;
Despras, Emmanuelle;
Le Cam, Eric;
Kannouche, Patricia L

Publication type:

Article

Tracking of progressing human DNA polymerase δ holoenzymes reveals distributions of DNA lesion bypass activities.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9893, doi. 10.1093/nar/gkac745

By:

Dannenberg, Rachel L;
Cardina, Joseph A;
Pytko, Kara G;
Hedglin, Mark

Publication type:

Article

KdmB-EcoA-RpdA-SntB chromatin complex binds regulatory genes and coordinates fungal development with mycotoxin synthesis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9797, doi. 10.1093/nar/gkac744

By:

Karahoda, Betim;
Pardeshi, Lakhansing;
Ulas, Mevlut;
Dong, Zhiqiang;
Shirgaonkar, Niranjan;
Guo, Shuhui;
Wang, Fang;
Tan, Kaeling;
Sarikaya-Bayram, Özlem;
Bauer, Ingo;
Dowling, Paul;
Fleming, Alastair B;
Pfannenstiel, Brandon T;
Luciano-Rosario, Dianiris;
Berger, Harald;
Graessle, Stefan;
Alhussain, Mohamed M;
Strauss, Joseph;
Keller, Nancy P;
Wong, Koon Ho

Publication type:

Article

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9675, doi. 10.1093/nar/gkac743

By:

Rajput, Akanksha;
Tsunemoto, Hannah;
Sastry, Anand V;
Szubin, Richard;
Rychel, Kevin;
Chauhan, Siddharth M;
Pogliano, Joe;
Palsson, Bernhard O

Publication type:

Article

Small-molecule activators specific to adenine base editors through blocking the canonical TGF-β pathway.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9632, doi. 10.1093/nar/gkac742

By:

Yang, Yudong;
Zhang, Chi;
Song, Yixuan;
Li, Yawen;
Li, Pingping;
Huang, Min;
Meng, Feilong;
Zhang, Mingliang

Publication type:

Article

Lamin A/C impairments cause mitochondrial dysfunction by attenuating PGC1α and the NAMPT-NAD+ pathway.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9948, doi. 10.1093/nar/gkac741

By:

Maynard, Scott;
Hall, Arnaldur;
Galanos, Panagiotis;
Rizza, Salvatore;
Yamamoto, Tatsuro;
Gram, Helena Hagner;
Munk, Sebastian H N;
Shoaib, Muhammad;
Sørensen, Claus Storgaard;
Bohr, Vilhelm A;
Lerdrup, Mads;
Maya-Mendoza, Apolinar;
Bartek, Jiri

Publication type:

Article

NMR determination of the 2:1 binding complex of naphthyridine carbamate dimer (NCD) and CGG/CGG triad in double-stranded DNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9621, doi. 10.1093/nar/gkac740

By:

Yamada, Takeshi;
Furuita, Kyoko;
Sakurabayashi, Shuhei;
Nomura, Makoto;
Kojima, Chojiro;
Nakatani, Kazuhiko

Publication type:

Article

Global 5′-UTR RNA structure regulates translation of a SERPINA1 mRNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9689, doi. 10.1093/nar/gkac739

By:

Grayeski, Philip J;
Weidmann, Chase A;
Kumar, Jayashree;
Lackey, Lela;
Mustoe, Anthony M;
Busan, Steven;
Laederach, Alain;
Weeks, Kevin M

Publication type:

Article

Rotavirus RNA chaperone mediates global transcriptome-wide increase in RNA backbone flexibility.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10078, doi. 10.1093/nar/gkac738

By:

Coria, Aaztli;
Wienecke, Anastacia;
Knight, Michael L;
Desirò, Daniel;
Laederach, Alain;
Borodavka, Alexander

Publication type:

Article

androgen receptor couples promoter recruitment of RNA processing factors to regulation of alternative polyadenylation at the 3' end of transcripts.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9780, doi. 10.1093/nar/gkac737

By:

Caggiano, Cinzia;
Pieraccioli, Marco;
Pitolli, Consuelo;
Babini, Gabriele;
Zheng, Dinghai;
Tian, Bin;
Bielli, Pamela;
Sette, Claudio

Publication type:

Article

Mitochondrial stress induces AREG expression and epigenomic remodeling through c-JUN and YAP-mediated enhancer activation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9765, doi. 10.1093/nar/gkac735

By:

Hino, Yuko;
Nagaoka, Katsuya;
Oki, Shinya;
Etoh, Kan;
Hino, Shinjiro;
Nakao, Mitsuyoshi

Publication type:

Article

Dynamic switching of crotonylation to ubiquitination of H2A at lysine 119 attenuates transcription–replication conflicts caused by replication stress.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9873, doi. 10.1093/nar/gkac734

By:

Hao, Shuailin;
Wang, Ya;
Zhao, Yuqin;
Gao, Wen;
Cui, Wei;
Li, Youhang;
Cui, Jian;
Liu, Yu;
Lin, Lixiu;
Xu, Xingzhi;
Wang, Hailong

Publication type:

Article

Dichotomous cis-regulatory motifs mediate the maturation of the neuromuscular junction by retrograde BMP signaling.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9748, doi. 10.1093/nar/gkac730

By:

Vuilleumier, Robin;
Miao, Mo;
Medina-Giro, Sonia;
Ell, Clara-Maria;
Flibotte, Stephane;
Lian, Tianshun;
Kauwe, Grant;
Collins, Annie;
Ly, Sophia;
Pyrowolakis, George;
Haghighi, A Pejmun;
Allan, Douglas W

Publication type:

Article

Structural insights into the dual activities of the two-barrel RNA polymerase QDE-1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10169, doi. 10.1093/nar/gkac727

By:

Cui, Ruixue;
Li, Hao;
Zhao, Jin;
Li, Xuhang;
Gan, Jianhua;
Ma, Jinbiao

Publication type:

Article

Chromatin fiber breaks into clutches under tension and crowding.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9738, doi. 10.1093/nar/gkac725

By:

Liu, Shuming;
Lin, Xingcheng;
Zhang, Bin

Publication type:

Article

Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10053, doi. 10.1093/nar/gkac724

By:

Bhutada, Priya;
Favre, Sébastien;
Jaafar, Mariam;
Hafner, Jutta;
Liesinger, Laura;
Unterweger, Stefan;
Bischof, Karin;
Darnhofer, Barbara;
Siva Sankar, Devanarayanan;
Rechberger, Gerald;
Abou Merhi, Raghida;
Lebaron, Simon;
Birner-Gruenberger, Ruth;
Kressler, Dieter;
Henras, Anthony K;
Pertschy, Brigitte

Publication type:

Article

molecular mechanism of microRNA duplex selectivity of Arabidopsis ARGONAUTE10.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 10041, doi. 10.1093/nar/gkac571

By:

Xiao, Yao;
MacRae, Ian J

Publication type:

Article

multiplexed, three-dimensional pooling and next-generation sequencing strategy for creating barcoded mutant arrays: construction of a Schizosaccharomyces pombe transposon insertion library.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. e102, doi. 10.1093/nar/gkac546

By:

Li, Yanhui;
Molyneaux, Neil;
Zhang, Haitao;
Zhou, Gang;
Kerr, Carly;
Adams, Mark D;
Berkner, Kathleen L;
Runge, Kurt W

Publication type:

Article

StrainXpress: strain aware metagenome assembly from short reads.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. e101, doi. 10.1093/nar/gkac543

By:

Kang, Xiongbin;
Luo, Xiao;
Schönhuth, Alexander

Publication type:

Article

Expansion microscopy allows high resolution single cell analysis of epigenetic readers.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. e100, doi. 10.1093/nar/gkac521

By:

Acke, Aline;
Van Belle, Siska;
Louis, Boris;
Vitale, Raffaele;
Rocha, Susana;
Voet, Thierry;
Debyser, Zeger;
Hofkens, Johan

Publication type:

Article

Analysis of queuosine and 2-thio tRNA modifications by high throughput sequencing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. e99, doi. 10.1093/nar/gkac517

By:

Katanski, Christopher D;
Watkins, Christopher P;
Zhang, Wen;
Reyer, Matthew;
Miller, Samuel;
Pan, Tao

Publication type:

Article

Selective ablation of 3′ RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. e98, doi. 10.1093/nar/gkac516

By:

Gallardo, Christian M;
Nguyen, Anh-Viet T;
Routh, Andrew L;
Torbett, Bruce E

Publication type:

Article

DeNovoCNN: a deep learning approach to de novo variant calling in next generation sequencing data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. e97, doi. 10.1093/nar/gkac511

By:

Khazeeva, Gelana;
Sablauskas, Karolis;
van der Sanden, Bart;
Steyaert, Wouter;
Kwint, Michael;
Rots, Dmitrijs;
Hinne, Max;
van Gerven, Marcel;
Yntema, Helger;
Vissers, Lisenka;
Gilissen, Christian

Publication type:

Article

consequences of differential origin licensing dynamics in distinct chromatin environments.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 17, p. 9601, doi. 10.1093/nar/gkac003

By:

Mei, Liu;
Kedziora, Katarzyna M;
Song, Eun-Ah;
Purvis, Jeremy E;
Cook, Jeanette Gowen

Publication type:

Article