Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 16

Results: 31

ADP-ribosylation of RNA in mammalian cells is mediated by TRPT1 and multiple PARPs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9426, doi. 10.1093/nar/gkac711

By:

Weixler, Lisa;
Feijs, Karla L H;
Zaja, Roko

Publication type:

Article

Correction to 'Parentally inherited long non-coding RNA Cyrano is involved in zebrafish neurodevelopment'.

Published in:: 2022
Publication type:: Correction Notice

BAF A12T mutation disrupts lamin A/C interaction, impairing robust repair of nuclear envelope ruptures in Nestor–Guillermo progeria syndrome cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9260, doi. 10.1093/nar/gkac726

By:

Janssen, Anne;
Marcelot, Agathe;
Breusegem, Sophia;
Legrand, Pierre;
Zinn-Justin, Sophie;
Larrieu, Delphine

Publication type:

Article

Distinct, opposing functions for CFIm59 and CFIm68 in mRNA alternative polyadenylation of Pten and in the PI3K/Akt signalling cascade.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9397, doi. 10.1093/nar/gkac704

By:

Tseng, Hsin-Wei;
Mota-Sydor, Anthony;
Leventis, Rania;
Jovanovic, Predrag;
Topisirovic, Ivan;
Duchaine, Thomas F

Publication type:

Article

toxin–antitoxin RNA guards of CRISPR-Cas evolved high specificity through repeat degeneration.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9442, doi. 10.1093/nar/gkac712

By:

Cheng, Feiyue;
Wu, Aici;
Liu, Chao;
Cao, Xifeng;
Wang, Rui;
Shu, Xian;
Wang, Lingyun;
Zhang, Yihan;
Xiang, Hua;
Li, Ming

Publication type:

Article

Topoisomerase IIA in adult NSCs regulates SVZ neurogenesis by transcriptional activation of Usp37.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9319, doi. 10.1093/nar/gkac731

By:

Qin, Shangyao;
Yuan, Yimin;
Huang, Xiao;
Tan, Zijian;
Hu, Xin;
Liu, Hong;
Pu, Yingyan;
Ding, Yu-qiang;
Su, Zhida;
He, Cheng

Publication type:

Article

Disease-associated inosine misincorporation into RNA hinders translation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9306, doi. 10.1093/nar/gkac709

By:

Schroader, Jacob H;
Jones, Lindsey A;
Meng, Ryan;
Shorrock, Hannah K;
Richardson, Jared I;
Shaughnessy, Sharon M;
Lin, Qishan;
Begley, Thomas J;
Berglund, J Andrew;
Fuchs, Gabriele;
Handley, Mark T;
Reddy, Kaalak

Publication type:

Article

Domain specific mutations in dyskerin disrupt 3′ end processing of scaRNA13.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9413, doi. 10.1093/nar/gkac706

By:

Nagpal, Neha;
Tai, Albert K;
Nandakumar, Jayakrishnan;
Agarwal, Suneet

Publication type:

Article

RNA helicase-dependent gene looping impacts messenger RNA processing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9226, doi. 10.1093/nar/gkac717

By:

Terrone, Sophie;
Valat, Jessica;
Fontrodona, Nicolas;
Giraud, Guillaume;
Claude, Jean-Baptiste;
Combe, Emmanuel;
Lapendry, Audrey;
Polvèche, Hélène;
Ameur, Lamya Ben;
Duvermy, Arnaud;
Modolo, Laurent;
Bernard, Pascal;
Mortreux, Franck;
Auboeuf, Didier;
Bourgeois, Cyril F

Publication type:

Article

Painters in chromatin: a unified quantitative framework to systematically characterize epigenome regulation and memory.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9083, doi. 10.1093/nar/gkac702

By:

Abdulla, Amith Z;
Vaillant, Cédric;
Jost, Daniel

Publication type:

Article

No evidence of extensive non-CpG methylation in mtDNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9190, doi. 10.1093/nar/gkac701

By:

Guitton, Romain;
Nido, Gonzalo S;
Tzoulis, Charalampos

Publication type:

Article

Editor's Note to 'Activation of APE1/Ref-1 is dependent on reactive oxygen species generated after purinergic receptor stimulation by ATP'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 16, p. 9598, doi. 10.1093/nar/gkac700
Publication type:: Article

Human TRUB1 is a highly conserved pseudouridine synthase responsible for the formation of Ψ55 in mitochondrial tRNAAsn, tRNAGln, tRNAGlu and tRNAPro.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9368, doi. 10.1093/nar/gkac698

By:

Jia, Zidong;
Meng, Feilong;
Chen, Hui;
Zhu, Gao;
Li, Xincheng;
He, Yunfan;
Zhang, Liyao;
He, Xiao;
Zhan, Huisen;
Chen, Mengquan;
Ji, Yanchun;
Wang, Meng;
Guan, Min-Xin

Publication type:

Article

prokaryotic activity of the IGR IRESs is mediated by ribosomal protein S1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9355, doi. 10.1093/nar/gkac697

By:

Roberts, Luc;
Wieden, Hans-Joachim

Publication type:

Article

Structural basis of 3′-end poly(A) RNA recognition by LARP1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9534, doi. 10.1093/nar/gkac696

By:

Kozlov, Guennadi;
Mattijssen, Sandy;
Jiang, Jianning;
Nyandwi, Samuel;
Sprules, Tara;
Iben, James R;
Coon, Steven L;
Gaidamakov, Sergei;
Noronha, Anne M;
Wilds, Christopher J;
Maraia, Richard J;
Gehring, Kalle

Publication type:

Article

Cryo-EM structure of the Smc5/6 holo-complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9505, doi. 10.1093/nar/gkac692

By:

Hallett, Stephen T;
Campbell Harry, Isabella;
Schellenberger, Pascale;
Zhou, Lihong;
Cronin, Nora B;
Baxter, Jonathan;
Etheridge, Thomas J;
Murray, Johanne M;
Oliver, Antony W

Publication type:

Article

influenza A virus genome packaging network — complex, flexible and yet unsolved.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9023, doi. 10.1093/nar/gkac688

By:

Jakob, Celia;
Paul-Stansilaus, Rithu;
Schwemmle, Martin;
Marquet, Roland;
Bolte, Hardin

Publication type:

Article

Prp43/DHX15 exemplify RNA helicase multifunctionality in the gene expression network.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9012, doi. 10.1093/nar/gkac687

By:

Bohnsack, Katherine E;
Kanwal, Nidhi;
Bohnsack, Markus T

Publication type:

Article

Stochastically multimerized ParB orchestrates DNA assembly as unveiled by single-molecule analysis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9294, doi. 10.1093/nar/gkac651

By:

Guo, Lijuan;
Zhao, Yilin;
Zhang, Qian;
Feng, Ying;
Bi, Lulu;
Zhang, Xia;
Wang, Teng;
Liu, Cong;
Ma, Hanhui;
Sun, Bo

Publication type:

Article

ATRX histone binding and helicase activities have distinct roles in neuronal differentiation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9162, doi. 10.1093/nar/gkac683

By:

Bieluszewska, Anna;
Wulfridge, Phillip;
Doherty, John;
Ren, Wenqing;
Sarma, Kavitha

Publication type:

Article

Directed evolution of colE1 plasmid replication compatibility: a fast tractable tunable model for investigating biological orthogonality.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9568, doi. 10.1093/nar/gkac682

By:

Chaillou, Santiago;
Stamou, Pinelopi-Eleftheria;
Torres, Leticia L;
Riesco, Ana B;
Hazelton, Warren;
Pinheiro, Vitor B

Publication type:

Article

Identifying ribosome heterogeneity using ribosome profiling.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. e95, doi. 10.1093/nar/gkac484

By:

Alkan, Ferhat;
Wilkins, Oscar G;
Hernández-Pérez, Santiago;
Ramalho, Sofia;
Silva, Joana;
Ule, Jernej;
Faller, William J

Publication type:

Article

N4-acetylcytidine regulates the replication and pathogenicity of enterovirus 71.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9339, doi. 10.1093/nar/gkac675

By:

Hao, Haojie;
Liu, Weichi;
Miao, Yuanjiu;
Ma, Li;
Yu, Baocheng;
Liu, Lishi;
Yang, Chunjie;
Zhang, Kui;
Chen, Zhen;
Yang, Jingwen;
Zheng, Zhenhua;
Zhang, Bo;
Deng, Fei;
Gong, Peng;
Yuan, Jianhui;
Hu, Zhangli;
Guan, Wuxiang

Publication type:

Article

Performance evaluation of differential splicing analysis methods and splicing analytics platform construction.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9115, doi. 10.1093/nar/gkac686

By:

Li, Kuokuo;
Luo, Tengfei;
Zhu, Yan;
Huang, Yuanfeng;
Wang, An;
Zhang, Di;
Dong, Lijie;
Wang, Yujian;
Wang, Rui;
Tang, Dongdong;
Yu, Zhen;
Shen, Qunshan;
Lv, Mingrong;
Ling, Zhengbao;
Fang, Zhenghuan;
Yuan, Jing;
Li, Bin;
Xia, Kun;
He, Xiaojin;
Li, Jinchen

Publication type:

Article

transformation clustering algorithm and its application in polyribosomes structural profiling.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9001, doi. 10.1093/nar/gkac547

By:

Jiang, Wenhong;
Wagner, Jonathan;
Du, Wenjing;
Plitzko, Juergen;
Baumeister, Wolfgang;
Beck, Florian;
Guo, Qiang

Publication type:

Article

RUV-III-NB: normalization of single cell RNA-seq data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. e96, doi. 10.1093/nar/gkac486

By:

Salim, Agus;
Molania, Ramyar;
Wang, Jianan;
De Livera, Alysha;
Thijssen, Rachel;
Speed, Terence P

Publication type:

Article

What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. 9149, doi. 10.1093/nar/gkac679

By:

Pineau, Maïwenn;
Martis B., Shiny;
Forquet, Raphaël;
Baude, Jessica;
Villard, Camille;
Grand, Lucie;
Popowycz, Florence;
Soulère, Laurent;
Hommais, Florence;
Nasser, William;
Reverchon, Sylvie;
Meyer, Sam

Publication type:

Article

Noncanonical amino acid mutagenesis in response to recoding signal-enhanced quadruplet codons.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. e94, doi. 10.1093/nar/gkac474

By:

Chen, Yan;
He, Xinyuan;
Ma, Bin;
Liu, Kun;
Gao, Tianyu;
Niu, Wei;
Guo, Jiantao

Publication type:

Article

Iso-FRET: an isothermal competition assay to analyze quadruplex formation in vitro.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. e93, doi. 10.1093/nar/gkac465

By:

Luo, Yu;
Verga, Daniela;
Mergny, Jean-Louis

Publication type:

Article

Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. e92, doi. 10.1093/nar/gkac460

By:

Gabrieli, Tslil;
Michaeli, Yael;
Avraham, Sigal;
Torchinsky, Dmitry;
Margalit, Sapir;
Schütz, Leonie;
Juhasz, Matyas;
Coruh, Ceyda;
Arbib, Nissim;
Zhou, Zhaohui Sunny;
Law, Julie A;
Weinhold, Elmar;
Ebenstein, Yuval

Publication type:

Article

Detecting critical transition signals from single-cell transcriptomes to infer lineage-determining transcription factors.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 16, p. e91, doi. 10.1093/nar/gkac452

By:

Yang, Xinan H;
Goldstein, Andrew;
Sun, Yuxi;
Wang, Zhezhen;
Wei, Megan;
Moskowitz, Ivan P;
Cunningham, John M

Publication type:

Article