Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 15

Results: 47

The convergent xenogeneic silencer MucR predisposes α-proteobacteria to integrate AT-rich symbiosis genes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8580, doi. 10.1093/nar/gkac664

By:

Wen-Tao Shi;
Biliang Zhang;
Meng-Lin Li;
Ke-Han Liu;
Jian Jiao;
Chang-Fu Tian

Publication type:

Article

SMG-6 mRNA cleavage stalls ribosomes near premature stop codons in vivo.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8852, doi. 10.1093/nar/gkac681

By:

Kim, John H;
Modena, Matthew S;
Sehgal, Enisha;
Courney, Annie;
Neudorf, Celine W;
Arribere, Joshua A

Publication type:

Article

CRISPR-RNAa: targeted activation of translation using dCas13 fusions to translation initiation factors.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8986, doi. 10.1093/nar/gkac680

By:

Otoupal, Peter B;
Cress, Brady F;
Doudna, Jennifer A;
Schoeniger, Joseph S

Publication type:

Article

Widespread repression of anti-CRISPR production by anti-CRISPR-associated proteins.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8615, doi. 10.1093/nar/gkac674

By:

Shehreen, Saadlee;
Birkholz, Nils;
Fineran, Peter C;
Brown, Chris M

Publication type:

Article

FOXL2 and FOXA1 cooperatively assemble on the TP53 promoter in alternative dimer configurations.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8929, doi. 10.1093/nar/gkac673

By:

Choi, Yuri;
Luo, Yongyang;
Lee, Seunghwa;
Jin, Hanyong;
Yoon, Hye-Jin;
Hahn, Yoonsoo;
Bae, Jeehyeon;
Lee, Hyung Ho

Publication type:

Article

Nonlinear manipulation and analysis of large DNA datasets.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8974, doi. 10.1093/nar/gkac672

By:

Cui, Meiying;
Zhao, Xueping;
Reddavide, Francesco V;
Gaillez, Michelle Patino;
Heiden, Stephan;
Mannocci, Luca;
Thompson, Michael;
Zhang, Yixin

Publication type:

Article

Role for DNA double strand end-resection activity of RecBCD in control of aberrant chromosomal replication initiation in Escherichia coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8643, doi. 10.1093/nar/gkac670

By:

Goswami, Sayantan;
Gowrishankar, Jayaraman

Publication type:

Article

SRRM2 organizes splicing condensates to regulate alternative splicing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8599, doi. 10.1093/nar/gkac669

By:

Xu, Shaohai;
Lai, Soak-Kuan;
Sim, Donald Yuhui;
Ang, Warren Shou Leong;
Li, Hoi Yeung;
Roca, Xavier

Publication type:

Article

Molecular dynamics of DNA translocation by FtsK.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8459, doi. 10.1093/nar/gkac668

By:

Pajak, Joshua;
Arya, Gaurav

Publication type:

Article

Strand switching mechanism of Pif1 helicase induced by its collision with a G-quadruplex embedded in dsDNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8767, doi. 10.1093/nar/gkac667

By:

Valle-Orero, Jessica;
Rieu, Martin;
Tran, Phong Lan Thao;
Joubert, Alexandra;
Raj, Saurabh;
Allemand, Jean-François;
Croquette, Vincent;
Boulé, Jean-Baptiste

Publication type:

Article

Resistance of mitochondrial DNA to cadmium and Aflatoxin B1 damage-induced germline mutation accumulation in C. elegans.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8626, doi. 10.1093/nar/gkac666

By:

Leuthner, Tess C;
Benzing, Laura;
Kohrn, Brendan F;
Bergemann, Christina M;
Hipp, Michael J;
Hershberger, Kathleen A;
Mello, Danielle F;
Sokolskyi, Tymofii;
Stevenson, Kevin;
Merutka, Ilaria R;
Seay, Sarah A;
Gregory, Simon G;
Kennedy, Scott R;
Meyer, Joel N

Publication type:

Article

Single base-pair resolution analysis of DNA binding motif with MoMotif reveals an oncogenic function of CTCF zinc-finger 1 mutation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8441, doi. 10.1093/nar/gkac658

By:

Lebeau, Benjamin;
Zhao, Kaiqiong;
Jangal, Maika;
Zhao, Tiejun;
Guerra, Maria;
Greenwood, Celia M T;
Witcher, Michael

Publication type:

Article

Modeling splicing outcome by combining 5′ss strength and splicing regulatory elements.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8834, doi. 10.1093/nar/gkac663

By:

Müller, Lisa;
Ptok, Johannes;
Nisar, Azlan;
Antemann, Jennifer;
Grothmann, Ramona;
Hillebrand, Frank;
Brillen, Anna-Lena;
Ritchie, Anastasia;
Theiss, Stephan;
Schaal, Heiner

Publication type:

Article

expression of aminoglycoside resistance genes in integron cassettes is not controlled by riboswitches.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8566, doi. 10.1093/nar/gkac662

By:

Hipólito, Alberto;
García-Pastor, Lucía;
Blanco, Paula;
Trigo da Roza, Filipa;
Kieffer, Nicolas;
Vergara, Ester;
Jové, Thomas;
Álvarez, Julio;
Escudero, José Antonio

Publication type:

Article

Mammalian RNase H1 directs RNA primer formation for mtDNA replication initiation and is also necessary for mtDNA replication completion.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8749, doi. 10.1093/nar/gkac661

By:

Misic, Jelena;
Milenkovic, Dusanka;
Al-Behadili, Ali;
Xie, Xie;
Jiang, Min;
Jiang, Shan;
Filograna, Roberta;
Koolmeister, Camilla;
Siira, Stefan J;
Jenninger, Louise;
Filipovska, Aleksandra;
Clausen, Anders R;
Caporali, Leonardo;
Valentino, Maria Lucia;
La Morgia, Chiara;
Carelli, Valerio;
Nicholls, Thomas J;
Wredenberg, Anna;
Falkenberg, Maria;
Larsson, Nils-Göran

Publication type:

Article

Top3α is the replicative topoisomerase in mitochondrial DNA replication.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8733, doi. 10.1093/nar/gkac660

By:

Hangas, Anu;
Kekäläinen, Nina J;
Potter, Alisa;
Michell, Craig;
Aho, Kauko J;
Rutanen, Chiara;
Spelbrink, Johannes N;
Pohjoismäki, Jaakko L;
Goffart, Steffi

Publication type:

Article

convergent xenogeneic silencer MucR predisposes α-proteobacteria to integrate AT-rich symbiosis genes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8580, doi. 10.1093/nar/gkac664

By:

Shi, Wen-Tao;
Zhang, Biliang;
Li, Meng-Lin;
Liu, Ke-Han;
Jiao, Jian;
Tian, Chang-Fu

Publication type:

Article

Molecular basis of anti-CRISPR operon repression by Aca10.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8919, doi. 10.1093/nar/gkac656

By:

Lee, So Yeon;
Birkholz, Nils;
Fineran, Peter C;
Park, Hyun Ho

Publication type:

Article

sRNA-controlled iron sparing response in Staphylococci.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8529, doi. 10.1093/nar/gkac648

By:

Coronel-Tellez, Rodrigo H;
Pospiech, Mateusz;
Barrault, Maxime;
Liu, Wenfeng;
Bordeau, Valérie;
Vasnier, Christelle;
Felden, Brice;
Sargueil, Bruno;
Bouloc, Philippe

Publication type:

Article

Correction to 'TopDom: an efficient and deterministic method for identifying topological domains in genomes'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 15, p. 9000, doi. 10.1093/nar/gkac654
Publication type:: Article

SOX9 reprograms endothelial cells by altering the chromatin landscape.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8547, doi. 10.1093/nar/gkac652

By:

Fuglerud, Bettina M;
Drissler, Sibyl;
Lotto, Jeremy;
Stephan, Tabea L;
Thakur, Avinash;
Cullum, Rebecca;
Hoodless, Pamela A

Publication type:

Article

DNA circuits compatible encoder and demultiplexer based on a single biomolecular platform with DNA strands as outputs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8431, doi. 10.1093/nar/gkac650

By:

Xie, Tianci;
Deng, Yuhan;
Zhang, Jiarui;
Zhang, Zhen;
Hu, Zhe;
Wu, Tongbo

Publication type:

Article

Robust counterselection and advanced λRed recombineering enable markerless chromosomal integration of large heterologous constructs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8947, doi. 10.1093/nar/gkac649

By:

Bubnov, Dmitrii M;
Yuzbashev, Tigran V;
Khozov, Andrey A;
Melkina, Olga E;
Vybornaya, Tatiana V;
Stan, Guy-Bart;
Sineoky, Sergey P

Publication type:

Article

versatile Cas12k-based genetic engineering toolkit (C12KGET) for metabolic engineering in genetic manipulation-deprived strains.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8961, doi. 10.1093/nar/gkac655

By:

Cui, Yali;
Dong, Huina;
Tong, Baisong;
Wang, Huiying;
Chen, Xipeng;
Liu, Guangqing;
Zhang, Dawei

Publication type:

Article

Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8719, doi. 10.1093/nar/gkac647

By:

Fung, Herman K H;
Grimes, Shelley;
Huet, Alexis;
Duda, Robert L;
Chechik, Maria;
Gault, Joseph;
Robinson, Carol V;
Hendrix, Roger W;
Jardine, Paul J;
Conway, James F;
Baumann, Christoph G;
Antson, Alfred A

Publication type:

Article

FACT subunit SUPT16H associates with BRD4 and contributes to silencing of interferon signaling.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8700, doi. 10.1093/nar/gkac645

By:

Zhou, Dawei;
Wu, Zhenyu;
Park, Jun-Gyu;
Fiches, Guillaume N;
Li, Tai-Wei;
Ma, Qin;
Huang, Huachao;
Biswas, Ayan;
Martinez-Sobrido, Luis;
Santoso, Netty G;
Zhu, Jian

Publication type:

Article

B-to-A transition in target DNA during retroviral integration.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8898, doi. 10.1093/nar/gkac644

By:

Jóźwik, Ilona K;
Li, Wen;
Zhang, Da-Wei;
Wong, Doris;
Grawenhoff, Julia;
Ballandras-Colas, Allison;
Aiyer, Sriram;
Cherepanov, Peter;
Engelman, Alan N;
Lyumkis, Dmitry

Publication type:

Article

Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8512, doi. 10.1093/nar/gkac643

By:

Dash, Suchintak;
Palma, Cristina S D;
Baptista, Ines S C;
Almeida, Bilena L B;
Bahrudeen, Mohamed N M;
Chauhan, Vatsala;
Jagadeesan, Rahul;
Ribeiro, Andre S

Publication type:

Article

TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8491, doi. 10.1093/nar/gkac642

By:

Stolz, Paul;
Mantero, Angelo Salazar;
Tvardovskiy, Andrey;
Ugur, Enes;
Wange, Lucas E;
Mulholland, Christopher B;
Cheng, Yuying;
Wierer, Michael;
Enard, Wolfgang;
Schneider, Robert;
Bartke, Till;
Leonhardt, Heinrich;
Elsässer, Simon J;
Bultmann, Sebastian

Publication type:

Article

Precise tuning of bacterial translation initiation by non-equilibrium 5′-UTR unfolding observed in single mRNAs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8818, doi. 10.1093/nar/gkac635

By:

Ray, Sujay;
Dandpat, Shiba S;
Chatterjee, Surajit;
Walter, Nils G

Publication type:

Article

Structural assembly of the nucleic-acid-binding Thp3–Csn12–Sem1 complex functioning in mRNA splicing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8882, doi. 10.1093/nar/gkac634

By:

Kuang, Zhiling;
Ke, Jiyuan;
Hong, Jiong;
Zhu, Zhongliang;
Niu, Liwen

Publication type:

Article

Intratracheally administered LNA gapmer antisense oligonucleotides induce robust gene silencing in mouse lung fibroblasts.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8418, doi. 10.1093/nar/gkac630

By:

Shin, Minwook;
Chan, Io Long;
Cao, Yuming;
Gruntman, Alisha M;
Lee, Jonathan;
Sousa, Jacquelyn;
Rodríguez, Tomás C;
Echeverria, Dimas;
Devi, Gitali;
Debacker, Alexandre J;
Moazami, Michael P;
Krishnamurthy, Pranathi Meda;
Rembetsy-Brown, Julia M;
Kelly, Karen;
Yukselen, Onur;
Donnard, Elisa;
Parsons, Teagan J;
Khvorova, Anastasia;
Sontheimer, Erik J;
Maehr, René

Publication type:

Article

Staggered intercalation of DNA duplexes with base-pair modulation by two distinct drug molecules induces asymmetric backbone twisting and structure polymorphism.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8867, doi. 10.1093/nar/gkac629

By:

Satange, Roshan;
Kao, Shih-Hao;
Chien, Ching-Ming;
Chou, Shan-Ho;
Lin, Chi-Chien;
Neidle, Stephen;
Hou, Ming-Hon

Publication type:

Article

L1-ORF1p coiled coil enables formation of a tightly compacted nucleic acid-bound complex that is associated with retrotransposition.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8690, doi. 10.1093/nar/gkac628

By:

Cashen, Ben A;
Naufer, M Nabuan;
Morse, Michael;
Jones, Charles E;
Williams, Mark C;
Furano, Anthony V

Publication type:

Article

CGG repeats trigger translational frameshifts that generate aggregation-prone chimeric proteins.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8674, doi. 10.1093/nar/gkac626

By:

Wright, Shannon E;
Rodriguez, Caitlin M;
Monroe, Jeremy;
Xing, Jiazheng;
Krans, Amy;
Flores, Brittany N;
Barsur, Venkatesha;
Ivanova, Magdalena I;
Koutmou, Kristin S;
Barmada, Sami J;
Todd, Peter K

Publication type:

Article

HDAC7–TET2 epigenetic axis is essential during early B lymphocyte development.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8471, doi. 10.1093/nar/gkac619

By:

Azagra, Alba;
Meler, Ainara;
de Barrios, Oriol;
Tomás-Daza, Laureano;
Collazo, Olga;
Monterde, Beatriz;
Obiols, Mireia;
Rovirosa, Llorenç;
Vila-Casadesús, Maria;
Cabrera-Pasadas, Mónica;
Gusi-Vives, Mar;
Graf, Thomas;
Varela, Ignacio;
Sardina, José Luis;
Javierre, Biola M;
Parra, Maribel

Publication type:

Article

Identification of a novel deFADding activity in human, yeast and bacterial 5′ to 3′ exoribonucleases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8807, doi. 10.1093/nar/gkac617

By:

Sharma, Sunny;
Yang, Jun;
Doamekpor, Selom K;
Grudizen-Nogalska, Ewa;
Tong, Liang;
Kiledjian, Megerditch

Publication type:

Article

Correction to 'The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 15, p. 8999, doi. 10.1093/nar/gkac610
Publication type:: Article

MPP6 stimulates both RRP6 and DIS3 to degrade a specified subset of MTR4-sensitive substrates in the human nucleus.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8779, doi. 10.1093/nar/gkac559

By:

Fujiwara, Naoko;
Shigemoto, Maki;
Hirayama, Mizuki;
Fujita, Ken-ichi;
Seno, Shigeto;
Matsuda, Hideo;
Nagahama, Masami;
Masuda, Seiji

Publication type:

Article

RBFOX2-regulated TEAD1 alternative splicing plays a pivotal role in Hippo-YAP signaling.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8658, doi. 10.1093/nar/gkac509

By:

Choi, Sunkyung;
Lee, Hyo Seong;
Cho, Namjoon;
Kim, Inyoung;
Cheon, Seongmin;
Park, Chungoo;
Kim, Eun-Mi;
Kim, Wantae;
Kim, Kee K

Publication type:

Article

Functional editing of endogenous genes through rapid selection of cell pools (Rapid generation of endogenously tagged genes in Drosophila ovarian somatic sheath cells).

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. e90, doi. 10.1093/nar/gkac448

By:

Meng, Qingcai;
Stoyko, Daniel;
Andrews, Celine Marlin;
Konstantinidou, Parthena;
Genzor, Pavol;
O, Timothy;
Elchert, Alexandra R;
Benner, Leif;
Sobti, Sushil;
Katz, Esther Y;
Haase, Astrid D

Publication type:

Article

novel, rapid and sensitive flow cytometry method reveals degradation of promoter proximal paused RNAPII in the presence and absence of UV.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. e89, doi. 10.1093/nar/gkac434

By:

Bay, Lilli T E;
Syljuåsen, Randi G;
Landsverk, Helga B

Publication type:

Article

Detecting TAD-like domains from RNA-associated interactions.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. e88, doi. 10.1093/nar/gkac422

By:

Zhang, Yu Wei;
Chen, Lingxi;
Li, Shuai Cheng

Publication type:

Article

Organization of gene programs revealed by unsupervised analysis of diverse gene–trait associations.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. e87, doi. 10.1093/nar/gkac413

By:

Mizikovsky, Dalia;
Naval Sanchez, Marina;
Nefzger, Christian M;
Cuellar Partida, Gabriel;
Palpant, Nathan J

Publication type:

Article

Inference of cell state transitions and cell fate plasticity from single-cell with MARGARET.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. e86, doi. 10.1093/nar/gkac412

By:

Pandey, Kushagra;
Zafar, Hamim

Publication type:

Article

ShapeSorter: a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. e85, doi. 10.1093/nar/gkac405

By:

Tsybulskyi, Volodymyr;
Meyer, Irmtraud M

Publication type:

Article

phage parasite deploys a nicking nuclease effector to inhibit viral host replication.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8401, doi. 10.1093/nar/gkac002

By:

LeGault, Kristen N;
Barth, Zachary K;
DePaola, Peter;
Seed, Kimberley D

Publication type:

Article