Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 14

Results: 43

SUPT3H-less SAGA coactivator can assemble and function without significantly perturbing RNA polymerase II transcription in mammalian cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7972, doi. 10.1093/nar/gkac637

By:

Fischer, Veronique;
Hisler, Vincent;
Scheer, Elisabeth;
Lata, Elisabeth;
Morlet, Bastien;
Plassard, Damien;
Helmlinger, Dominique;
Devys, Didier;
Tora, László;
Vincent, Stéphane D

Publication type:

Article

Cooperative engagement and subsequent selective displacement of SR proteins define the pre-mRNA 3D structural scaffold for early spliceosome assembly.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8262, doi. 10.1093/nar/gkac636

By:

Saha, Kaushik;
Ghosh, Gourisankar

Publication type:

Article

mRNA- and factor-driven dynamic variability controls eIF4F-cap recognition for translation initiation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8240, doi. 10.1093/nar/gkac631

By:

Çetin, Burak;
O'Leary, Seán E

Publication type:

Article

Structural basis of Streptomyces transcription activation by zinc uptake regulator.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8363, doi. 10.1093/nar/gkac627

By:

Yang, Xu;
Wang, Yiqun;
Liu, Guiyang;
Deng, Zixin;
Lin, Shuangjun;
Zheng, Jianting

Publication type:

Article

Staphylococcal self-loading helicases couple the staircase mechanism with inter domain high flexibility.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8349, doi. 10.1093/nar/gkac625

By:

Qiao, Cuncun;
Debiasi-Anders, Gianluca;
Mir-Sanchis, Ignacio

Publication type:

Article

Decoding YAP dependent transcription in the liver.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7959, doi. 10.1093/nar/gkac624

By:

Biagioni, Francesca;
Croci, Ottavio;
Sberna, Silvia;
Donato, Elisa;
Sabò, Arianna;
Bisso, Andrea;
Curti, Laura;
Chiesa, Arianna;
Campaner, Stefano

Publication type:

Article

Editor's Note to 'Identification of peptide inhibitors of pre-mRNA splicing derived from the essential interaction domains of CDC5L and PLRG1'.

Published in:: 2022
Publication type:: Correction Notice

Editor's Note to 'Transcription activation by targeted recruitment of the RNA polymerase II CTD phosphatase FCP1'.

Published in:: 2022
Publication type:: Correction Notice

R-loop-induced irreparable DNA damage evades checkpoint detection in the C. elegans germline.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8041, doi. 10.1093/nar/gkac621

By:

Hicks, Tara;
Koury, Emily;
McCabe, Caleb;
Williams, Cameron;
Crahan, Caroline;
Smolikove, Sarit

Publication type:

Article

Zinc controls PML nuclear body formation through regulation of a paralog specific auto-inhibition in SUMO1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8331, doi. 10.1093/nar/gkac620

By:

Lussier-Price, Mathieu;
Wahba, Haytham M;
Mascle, Xavier H;
Cappadocia, Laurent;
Bourdeau, Veronique;
Gagnon, Christina;
Igelmann, Sebastian;
Sakaguchi, Kazuyasu;
Ferbeyre, Gerardo;
Omichinski, James G

Publication type:

Article

Insights into innate immune activation via PS-ASO–protein–TLR9 interactions.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8107, doi. 10.1093/nar/gkac618

By:

Pollak, Adam J;
Zhao, Luyi;
Vickers, Timothy A;
Huggins, Ian J;
Liang, Xue-Hai;
Crooke, Stanley T

Publication type:

Article

Role of EXO1 nuclease activity in genome maintenance, the immune response and tumor suppression in Exo1D173A mice.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8093, doi. 10.1093/nar/gkac616

By:

Wang, Shanzhi;
Lee, Kyeryoung;
Gray, Stephen;
Zhang, Yongwei;
Tang, Catherine;
Morrish, Rikke B;
Tosti, Elena;
van Oers, Johanna;
Amin, Mohammad Ruhul;
Cohen, Paula E;
MacCarthy, Thomas;
Roa, Sergio;
Scharff, Matthew D;
Edelmann, Winfried;
Chahwan, Richard

Publication type:

Article

Cap-independent translation and a precisely located RNA sequence enable SARS-CoV-2 to control host translation and escape anti-viral response.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8080, doi. 10.1093/nar/gkac615

By:

Slobodin, Boris;
Sehrawat, Urmila;
Lev, Anastasia;
Hayat, Daniel;
Zuckerman, Binyamin;
Fraticelli, Davide;
Ogran, Ariel;
Ben-Shmuel, Amir;
Bar-David, Elad;
Levy, Haim;
Ulitsky, Igor;
Dikstein, Rivka

Publication type:

Article

HDAC1 and PRC2 mediate combinatorial control in SPI1/PU.1-dependent gene repression in murine erythroleukaemia.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7938, doi. 10.1093/nar/gkac613

By:

Gregoricchio, Sebastian;
Polit, Lélia;
Esposito, Michela;
Berthelet, Jérémy;
Delestré, Laure;
Evanno, Emilie;
Diop, M'Boyba;
Gallais, Isabelle;
Aleth, Hanna;
Poplineau, Mathilde;
Zwart, Wilbert;
Rosenbauer, Frank;
Rodrigues-Lima, Fernando;
Duprez, Estelle;
Boeva, Valentina;
Guillouf, Christel

Publication type:

Article

LncRNA CTBP1-DT-encoded microprotein DDUP sustains DNA damage response signalling to trigger dual DNA repair mechanisms.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8060, doi. 10.1093/nar/gkac611

By:

Yu, Ruyuan;
Hu, Yameng;
Zhang, Shuxia;
Li, Xincheng;
Tang, Miaoling;
Yang, Meisongzhu;
Wu, Xingui;
Li, Ziwen;
Liao, Xinyi;
Xu, Yingru;
Li, Man;
Chen, Suwen;
Qian, Wanying;
Gong, Li-Yun;
Song, Libing;
Li, Jun

Publication type:

Article

silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8226, doi. 10.1093/nar/gkac609

By:

Sobańska, Daria;
Komur, Alicja A;
Chabowska-Kita, Agnieszka;
Gumna, Julita;
Kumari, Pooja;
Pachulska-Wieczorek, Katarzyna;
Ciosk, Rafal

Publication type:

Article

Structural basis of AlpA-dependent transcription antitermination.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8321, doi. 10.1093/nar/gkac608

By:

Wen, Aijia;
Zhao, Minxing;
Jin, Sha;
Lu, Yuan-Qiang;
Feng, Yu

Publication type:

Article

Exploration of DNA processing features unravels novel properties of ICE conjugation in Gram-positive bacteria.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8127, doi. 10.1093/nar/gkac607

By:

Laroussi, Haifa;
Aoudache, Yanis;
Robert, Emilie;
Libante, Virginie;
Thiriet, Louise;
Mias-Lucquin, Dominique;
Douzi, Badreddine;
Roussel, Yvonne;
Chauvot de Beauchêne, Isaure;
Soler, Nicolas;
Leblond-Bourget, Nathalie

Publication type:

Article

Reconfiguration of DNA nanostructures induced by enzymatic ligation treatment.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8392, doi. 10.1093/nar/gkac606

By:

Bai, Tanxi;
Zhang, Jiayi;
Huang, Kai;
Wang, Wen;
Chen, Bowen;
Li, Yujie;
Zhao, Mengyao;
Zhang, Suoyu;
Zhu, Chenyou;
Liu, Dongsheng;
Wei, Bryan

Publication type:

Article

Melanoma RBPome identification reveals PDIA6 as an unconventional RNA-binding protein involved in metastasis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8207, doi. 10.1093/nar/gkac605

By:

Mestre-Farràs, Neus;
Guerrero, Santiago;
Bley, Nadine;
Rivero, Ezequiel;
Coll, Olga;
Borràs, Eva;
Sabidó, Eduard;
Indacochea, Alberto;
Casillas-Serra, Carlos;
Järvelin, Aino I;
Oliva, Baldomero;
Castello, Alfredo;
Hüttelmaier, Stefan;
Gebauer, Fátima

Publication type:

Article

Enhanced polymerase activity permits efficient synthesis by cancer-associated DNA polymerase ϵ variants at low dNTP levels.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8023, doi. 10.1093/nar/gkac602

By:

Barbari, Stephanie R;
Beach, Annette K;
Markgren, Joel G;
Parkash, Vimal;
Moore, Elizabeth A;
Johansson, Erik;
Shcherbakova, Polina V

Publication type:

Article

Notch-dependent and -independent functions of transcription factor RBPJ.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7925, doi. 10.1093/nar/gkac601

By:

Friedrich, Tobias;
Ferrante, Francesca;
Pioger, Léo;
Nist, Andrea;
Stiewe, Thorsten;
Andrau, Jean-Christophe;
Bartkuhn, Marek;
Giaimo, Benedetto Daniele;
Borggrefe, Tilman

Publication type:

Article

NURF301 contributes to gypsy chromatin insulator-mediated nuclear organization.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7906, doi. 10.1093/nar/gkac600

By:

Chen, Shue;
Rosin, Leah F;
Pegoraro, Gianluca;
Moshkovich, Nellie;
Murphy, Patrick J;
Yu, Guoyun;
Lei, Elissa P

Publication type:

Article

Spliceosomal SL1 RNA binding to U1-70K: the role of the extended RRM.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8193, doi. 10.1093/nar/gkac599

By:

Gopan, Gopika;
Ghaemi, Zhaleh;
Davis, Caitlin M;
Gruebele, Martin

Publication type:

Article

Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8302, doi. 10.1093/nar/gkac597

By:

Nishima, Wataru;
Girodat, Dylan;
Holm, Mikael;
Rundlet, Emily J;
Alejo, Jose L;
Fischer, Kara;
Blanchard, Scott C;
Sanbonmatsu, Karissa Y

Publication type:

Article

Structure of the human RAD17–RFC clamp loader and 9–1–1 checkpoint clamp bound to a dsDNA–ssDNA junction.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8279, doi. 10.1093/nar/gkac588

By:

Day, Matthew;
Oliver, Antony W;
Pearl, Laurence H

Publication type:

Article

Elucidation of structure–function relationships in Methanocaldococcus jannaschii RNase P, a multi-subunit catalytic ribonucleoprotein.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8154, doi. 10.1093/nar/gkac595

By:

Phan, Hong-Duc;
Norris, Andrew S;
Du, Chen;
Stachowski, Kye;
Khairunisa, Bela H;
Sidharthan, Vaishnavi;
Mukhopadhyay, Biswarup;
Foster, Mark P;
Wysocki, Vicki H;
Gopalan, Venkat

Publication type:

Article

Induction of senescence upon loss of the Ash2l core subunit of H3K4 methyltransferase complexes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7889, doi. 10.1093/nar/gkac591

By:

Bochyńska, Agnieszka;
Stenzel, Alexander T;
Boroujeni, Roksaneh Sayadi;
Kuo, Chao-Chung;
Barsoum, Mirna;
Liang, Weili;
Bussmann, Philip;
Costa, Ivan G;
Lüscher-Firzlaff, Juliane;
Lüscher, Bernhard

Publication type:

Article

stability and number of nucleating interactions determine DNA hybridization rates in the absence of secondary structure.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7829, doi. 10.1093/nar/gkac590

By:

Hertel, Sophie;
Spinney, Richard E;
Xu, Stephanie Y;
Ouldridge, Thomas E;
Morris, Richard G;
Lee, Lawrence K

Publication type:

Article

Flipped over U: structural basis for dsRNA cleavage by the SARS-CoV-2 endoribonuclease.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8290, doi. 10.1093/nar/gkac589

By:

Frazier, Meredith N;
Wilson, Isha M;
Krahn, Juno M;
Butay, Kevin John;
Dillard, Lucas B;
Borgnia, Mario J;
Stanley, Robin E

Publication type:

Article

Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8168, doi. 10.1093/nar/gkac596

By:

Roden, Christine A;
Dai, Yifan;
Giannetti, Catherine A;
Seim, Ian;
Lee, Myungwoon;
Sealfon, Rachel;
McLaughlin, Grace A;
Boerneke, Mark A;
Iserman, Christiane;
Wey, Samuel A;
Ekena, Joanne L;
Troyanskaya, Olga G;
Weeks, Kevin M;
You, Lingchong;
Chilkoti, Ashutosh;
Gladfelter, Amy S

Publication type:

Article

DBC1 is a key positive regulator of enhancer epigenomic writers KMT2D and p300.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7873, doi. 10.1093/nar/gkac585

By:

Kim, Hwa Jin;
Moon, Sue Jin;
Hong, Sanghoon;
Won, Hong-Hee;
Kim, Jeong Hoon

Publication type:

Article

PHF20 is crucial for epigenetic control of starvation-induced autophagy through enhancer activation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7856, doi. 10.1093/nar/gkac584

By:

Park, Se Won;
Kim, Jaehoon;
Oh, Sungryong;
Lee, Jeongyoon;
Cha, Joowon;
Lee, Hyun Sik;
Kim, Keun Il;
Park, Daechan;
Baek, Sung Hee

Publication type:

Article

Strand annealing and motor driven activities of SMARCAL1 and ZRANB3 are stimulated by RAD51 and the paralog complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8008, doi. 10.1093/nar/gkac583

By:

Halder, Swagata;
Ranjha, Lepakshi;
Taglialatela, Angelo;
Ciccia, Alberto;
Cejka, Petr

Publication type:

Article

Systematic comparison of CRISPR-based transcriptional activators uncovers gene-regulatory features of enhancer–promoter interactions.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7842, doi. 10.1093/nar/gkac582

By:

Wang, Kaiyuan;
Escobar, Mario;
Li, Jing;
Mahata, Barun;
Goell, Jacob;
Shah, Spencer;
Cluck, Madeleine;
Hilton, Isaac B

Publication type:

Article

In vitro reconstitution reveals a key role of human mitochondrial EXOG in RNA primer processing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7991, doi. 10.1093/nar/gkac581

By:

Karlowicz, Anna;
Dubiel, Andrzej B;
Czerwinska, Jolanta;
Bledea, Adela;
Purzycki, Piotr;
Grzelewska, Marta;
McAuley, Ryan J;
Szczesny, Roman J;
Brzuska, Gabriela;
Krol, Ewelina;
Szczesny, Bartosz;
Szymanski, Michal R

Publication type:

Article

Small molecule-based detection of non-canonical RNA G-quadruplex structures that modulate protein translation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8143, doi. 10.1093/nar/gkac580

By:

Katsuda, Yousuke;
Sato, Shin-ichi;
Inoue, Maimi;
Tsugawa, Hisashi;
Kamura, Takuto;
Kida, Tomoki;
Matsumoto, Rio;
Asamitsu, Sefan;
Shioda, Norifumi;
Shiroto, Shuhei;
Oosawatsu, Yoshiki;
Yatsuzuka, Kenji;
Kitamura, Yusuke;
Hagihara, Masaki;
Ihara, Toshihiro;
Uesugi, Motonari

Publication type:

Article

Enhancement of CRISPR/Cas12a trans-cleavage activity using hairpin DNA reporters.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 8377, doi. 10.1093/nar/gkac578

By:

Rossetti, Marianna;
Merlo, Rosa;
Bagheri, Neda;
Moscone, Danila;
Valenti, Anna;
Saha, Aakash;
Arantes, Pablo R;
Ippodrino, Rudy;
Ricci, Francesco;
Treglia, Ida;
Delibato, Elisabetta;
van der Oost, John;
Palermo, Giulia;
Perugino, Giuseppe;
Porchetta, Alessandro

Publication type:

Article

G-quadruplex structural transition driven by a platinum compound.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7816, doi. 10.1093/nar/gkac572

By:

Liu, Wenting;
Zhu, Bo-Chen;
Liu, Liu-Yi;
Xia, Xiao-Yu;
Mao, Zong-Wan

Publication type:

Article

Integrating convolution and self-attention improves language model of human genome for interpreting non-coding regions at base-resolution.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. e81, doi. 10.1093/nar/gkac326

By:

Yang, Meng;
Huang, Lichao;
Huang, Haiping;
Tang, Hui;
Zhang, Nan;
Yang, Huanming;
Wu, Jihong;
Mu, Feng

Publication type:

Article

Cell type identification in spatial transcriptomics data can be improved by leveraging cell-type-informative paired tissue images using a Bayesian probabilistic model.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. e80, doi. 10.1093/nar/gkac320

By:

Zubair, Asif;
Chapple, Richard H;
Natarajan, Sivaraman;
Wright, William C;
Pan, Min;
Lee, Hyeong-Min;
Tillman, Heather;
Easton, John;
Geeleher, Paul

Publication type:

Article

Oligo targeting for profiling drug resistance mutations in the parasitic trypanosomatids.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. e79, doi. 10.1093/nar/gkac319

By:

Altmann, Simone;
Rico, Eva;
Carvalho, Sandra;
Ridgway, Melanie;
Trenaman, Anna;
Donnelly, Hannah;
Tinti, Michele;
Wyllie, Susan;
Horn, David

Publication type:

Article

transcriptional roadblock protects yeast centromeres.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 14, p. 7801, doi. 10.1093/nar/gkac117

By:

Hedouin, Sabrine;
Logsdon, Glennis A;
Underwood, Jason G;
Biggins, Sue

Publication type:

Article