Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 13

Results: 45

Editorial: Critical reviews and perspectives in Nucleic Acids Research.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7201, doi. 10.1093/nar/gkac598

By:

Corey, David R;
Ulrich, Helle D

Publication type:

Article

Systemic approaches using single cell transcriptome reveal that C/EBPγ regulates autophagy under amino acid starved condition.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7298, doi. 10.1093/nar/gkac593

By:

Kim, Dongha;
Kim, Junil;
Yu, Young Suk;
Kim, Yong Ryoul;
Baek, Sung Hee;
Won, Kyoung-Jae

Publication type:

Article

Highly efficient CRISPR-mediated large DNA docking and multiplexed prime editing using a single baculovirus.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7783, doi. 10.1093/nar/gkac587

By:

Aulicino, Francesco;
Pelosse, Martin;
Toelzer, Christine;
Capin, Julien;
Ilegems, Erwin;
Meysami, Parisa;
Rollarson, Ruth;
Berggren, Per-Olof;
Dillingham, Mark Simon;
Schaffitzel, Christiane;
Saleem, Moin A;
Welsh, Gavin I;
Berger, Imre

Publication type:

Article

De novo assembly of human genome at single-cell levels.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7479, doi. 10.1093/nar/gkac586

By:

Xie, Haoling;
Li, Wen;
Hu, Yuqiong;
Yang, Cheng;
Lu, Jiansen;
Guo, Yuqing;
Wen, Lu;
Tang, Fuchou

Publication type:

Article

Quantitative contribution of the spacer length in the supercoiling-sensitivity of bacterial promoters.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7287, doi. 10.1093/nar/gkac579

By:

Forquet, Raphaël;
Nasser, William;
Reverchon, Sylvie;
Meyer, Sam

Publication type:

Article

Cryo neutron crystallography demonstrates influence of RNA 2′-OH orientation on conformation, sugar pucker and water structure.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7721, doi. 10.1093/nar/gkac577

By:

Harp, Joel M;
Lybrand, Terry P;
Pallan, Pradeep S;
Coates, Leighton;
Sullivan, Brendan;
Egli, Martin

Publication type:

Article

Characterization of sequence contexts that favor alternative end joining at Cas9-induced double-strand breaks.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7465, doi. 10.1093/nar/gkac575

By:

Hanscom, Terrence;
Woodward, Nicholas;
Batorsky, Rebecca;
Brown, Alexander J;
Roberts, Steven A;
McVey, Mitch

Publication type:

Article

Retraction of 'Protein kinase CK2 phosphorylation regulates the interaction of Kaposi's sarcoma-associated herpesvirus regulatory protein ORF57 with its multifunctional partner hnRNP K'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 13, p. 7800, doi. 10.1093/nar/gkac574
Publication type:: Article

Phosphorylation of SAMHD1 Thr592 increases C-terminal domain dynamics, tetramer dissociation and ssDNA binding kinetics.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7545, doi. 10.1093/nar/gkac573

By:

Orris, Benjamin;
Huynh, Kevin W;
Ammirati, Mark;
Han, Seungil;
Bolaños, Ben;
Carmody, Jason;
Petroski, Matthew D;
Bosbach, Benedikt;
Shields, David J;
Stivers, James T

Publication type:

Article

Acetaldehyde makes a distinct mutation signature in single-stranded DNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7451, doi. 10.1093/nar/gkac570

By:

Vijayraghavan, Sriram;
Porcher, Latarsha;
Mieczkowski, Piotr A;
Saini, Natalie

Publication type:

Article

Short LNA-modified oligonucleotide probes as efficient disruptors of DNA G-quadruplexes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7247, doi. 10.1093/nar/gkac569

By:

Chowdhury, Souroprobho;
Wang, Jiayi;
Nuccio, Sabrina Pia;
Mao, Hanbin;
Di Antonio, Marco

Publication type:

Article

Regulated dicing of pre-mir-144 via reshaping of its terminal loop.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7637, doi. 10.1093/nar/gkac568

By:

Shang, Renfu;
Kretov, Dmitry A;
Adamson, Scott I;
Treiber, Thomas;
Treiber, Nora;
Vedanayagam, Jeffrey;
Chuang, Jeffrey H;
Meister, Gunter;
Cifuentes, Daniel;
Lai, Eric C

Publication type:

Article

Large-scale genome editing based on high-capacity adenovectors and CRISPR-Cas9 nucleases rescues full-length dystrophin synthesis in DMD muscle cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7761, doi. 10.1093/nar/gkac567

By:

Tasca, Francesca;
Brescia, Marcella;
Wang, Qian;
Liu, Jin;
Janssen, Josephine M;
Szuhai, Karoly;
Gonçalves, Manuel A F V

Publication type:

Article

Conjugation of chemical handles and functional moieties to DNA during solid phase synthesis with sulfonyl azides.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7235, doi. 10.1093/nar/gkac566

By:

Santorelli, Angel;
Gothelf, Kurt V

Publication type:

Article

Loosely-packed dynamical structures with partially-melted surface being the key for thermophilic argonaute proteins achieving high DNA-cleavage activity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7529, doi. 10.1093/nar/gkac565

By:

Zheng, Lirong;
Lu, Hui;
Zan, Bing;
Li, Song;
Liu, Hao;
Liu, Zhuo;
Huang, Juan;
Liu, Yongjia;
Jiang, Fan;
Liu, Qian;
Feng, Yan;
Hong, Liang

Publication type:

Article

Structural analysis of the basal state of the Artemis:DNA-PKcs complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7697, doi. 10.1093/nar/gkac564

By:

Watanabe, Go;
Lieber, Michael R;
Williams, Dewight R

Publication type:

Article

Structural and functional characterization of DdrC, a novel DNA damage-induced nucleoid associated protein involved in DNA compaction.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7680, doi. 10.1093/nar/gkac563

By:

Banneville, Anne-Sophie;
Bouthier de la Tour, Claire;
De Bonis, Salvatore;
Hognon, Cécilia;
Colletier, Jacques-Philippe;
Teulon, Jean-Marie;
Le Roy, Aline;
Pellequer, Jean-Luc;
Monari, Antonio;
Dehez, François;
Confalonieri, Fabrice;
Servant, Pascale;
Timmins, Joanna

Publication type:

Article

Identification of nucleobase chemical modifications that reduce the hepatotoxicity of gapmer antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7224, doi. 10.1093/nar/gkac562

By:

Yoshida, Tokuyuki;
Morihiro, Kunihiko;
Naito, Yuki;
Mikami, Atsushi;
Kasahara, Yuuya;
Inoue, Takao;
Obika, Satoshi

Publication type:

Article

Quantitative parameters of bacterial RNA polymerase open-complex formation, stabilization and disruption on a consensus promoter.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7511, doi. 10.1093/nar/gkac560

By:

Bera, Subhas C;
America, Pim P B;
Maatsola, Santeri;
Seifert, Mona;
Ostrofet, Eugeniu;
Cnossen, Jelmer;
Spermann, Monika;
Papini, Flávia S;
Depken, Martin;
Malinen, Anssi M;
Dulin, David

Publication type:

Article

On the stability of stalled RNA polymerase and its removal by RapA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7396, doi. 10.1093/nar/gkac558

By:

Portman, James R;
Qayyum, M Zuhaib;
Murakami, Katsuhiko S;
Strick, Terence R

Publication type:

Article

P-bodies directly regulate MARF1-mediated mRNA decay in human cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7623, doi. 10.1093/nar/gkac557

By:

Brothers, William R;
Fakim, Hana;
Kajjo, Sam;
Fabian, Marc R

Publication type:

Article

Activating natural product synthesis using CRISPR interference and activation systems in Streptomyces.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7751, doi. 10.1093/nar/gkac556

By:

Ameruoso, Andrea;
Villegas Kcam, Maria Claudia;
Cohen, Katherine Piper;
Chappell, James

Publication type:

Article

Determination of human DNA replication origin position and efficiency reveals principles of initiation zone organisation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7436, doi. 10.1093/nar/gkac555

By:

Guilbaud, Guillaume;
Murat, Pierre;
Wilkes, Helen S;
Lerner, Leticia Koch;
Sale, Julian E;
Krude, Torsten

Publication type:

Article

Repurposing CRISPR RNA-guided integrases system for one-step, efficient genomic integration of ultra-long DNA sequences.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7739, doi. 10.1093/nar/gkac554

By:

Cheng, Zhou-Hua;
Wu, Jie;
Liu, Jia-Qi;
Min, Di;
Liu, Dong-Feng;
Li, Wen-Wei;
Yu, Han-Qing

Publication type:

Article

Characterization of an autonomous pathway complex that promotes flowering in Arabidopsis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7380, doi. 10.1093/nar/gkac551

By:

Qi, Pei-Lin;
Zhou, Hao-Ran;
Zhao, Qiang-Qiang;
Feng, Chao;
Ning, Yong-Qiang;
Su, Yin-Na;
Cai, Xue-Wei;
Yuan, Dan-Yang;
Zhang, Zhao-Chen;
Su, Xiao-Min;
Chen, Shan-Shan;
Li, Lin;
Chen, She;
He, Xin-Jian

Publication type:

Article

OCT4 activates a Suv39h1-repressive antisense lncRNA to couple histone H3 Lysine 9 methylation to pluripotency.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7367, doi. 10.1093/nar/gkac550

By:

Bernard, Laure D;
Dubois, Agnès;
Heurtier, Victor;
Fischer, Véronique;
Gonzalez, Inma;
Chervova, Almira;
Tachtsidi, Alexandra;
Gil, Noa;
Owens, Nick;
Bates, Lawrence E;
Vandormael-Pournin, Sandrine;
Silva, José C R;
Ulitsky, Igor;
Cohen-Tannoudji, Michel;
Navarro, Pablo

Publication type:

Article

Division of labor within the DNA damage tolerance system reveals non-epistatic and clinically actionable targets for precision cancer medicine.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7420, doi. 10.1093/nar/gkac545

By:

Spanjaard, Aldo;
Shah, Ronak;
de Groot, Daniël;
Buoninfante, Olimpia Alessandra;
Morris, Ben;
Lieftink, Cor;
Pritchard, Colin;
Zürcher, Lisa M;
Ormel, Shirley;
Catsman, Joyce J I;
de Korte-Grimmerink, Renske;
Siteur, Bjørn;
Proost, Natalie;
Boadum, Terry;
van de Ven, Marieke;
Song, Ji-Ying;
Kreft, Maaike;
van den Berk, Paul C M;
Beijersbergen, Roderick L;
Jacobs, Heinz

Publication type:

Article

Structural basis for the inability of chloramphenicol to inhibit peptide bond formation in the presence of A-site glycine.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7669, doi. 10.1093/nar/gkac548

By:

Syroegin, Egor A;
Aleksandrova, Elena V;
Polikanov, Yury S

Publication type:

Article

LncRNA EPR-induced METTL7A1 modulates target gene translation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7608, doi. 10.1093/nar/gkac544

By:

Briata, Paola;
Caputo, Luca;
Zapparoli, Ettore;
Marcaccini, Elisa;
Passalacqua, Mario;
Brondolo, Lorenzo;
Bordo, Domenico;
Rossi, Annalisa;
Nicoletti, Chiara;
Bucci, Gabriele;
Puri, Pier Lorenzo;
Inga, Alberto;
Gherzi, Roberto

Publication type:

Article

combinatorial system to examine the enzymatic repair of multiply damaged DNA substrates.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7406, doi. 10.1093/nar/gkac530

By:

Hsu, Chia Wei;
Conrad, James W;
Sowers, Mark L;
Baljinnyam, Tuvshintugs;
Herring, Jason L;
Hackfeld, Linda C;
Hatch, Sandra S;
Sowers, Lawrence C

Publication type:

Article

Establishing an environment in which rigorous scientific inquiry is practiced: a personal journey.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7216, doi. 10.1093/nar/gkac526

By:

Crooke, Stanley T

Publication type:

Article

Regulation of both transcription and RNA turnover contribute to germline specification.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7310, doi. 10.1093/nar/gkac542

By:

Tan, Kun;
Wilkinson, Miles F

Publication type:

Article

novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7591, doi. 10.1093/nar/gkac534

By:

Fasimoye, Rotimi Yemi;
Spencer, Rosie Elizabeth Barker;
Soto-Martin, Eva;
Eijlers, Peter;
Elmassoudi, Haitem;
Brivio, Sarah;
Mangana, Carolina;
Sabele, Viktorija;
Rechtorikova, Radoslava;
Wenzel, Marius;
Connolly, Bernadette;
Pettitt, Jonathan;
Müller, Berndt

Publication type:

Article

SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7326, doi. 10.1093/nar/gkac531

By:

Warrier, Tushar;
El Farran, Chadi;
Zeng, Yingying;
Ho, Benedict Shao Quan;
Bao, Qiuye;
Zheng, Zi Hao;
Bi, Xuezhi;
Ng, Huck Hui;
Ong, Derrick Sek Tong;
Chu, Justin Jang Hann;
Sanyal, Amartya;
Fullwood, Melissa Jane;
Collins, James J;
Li, Hu;
Xu, Jian;
Loh, Yuin-Han

Publication type:

Article

Molecular insights into the interaction of CAG trinucleotide RNA repeats with nucleolin and its implication in polyglutamine diseases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7655, doi. 10.1093/nar/gkac532

By:

An, Ying;
Chen, Zhefan S;
Chan, Ho Yin Edwin;
Ngo, Jacky Chi Ki

Publication type:

Article

Dual role of histone variant H3.3B in spermatogenesis: positive regulation of piRNA transcription and implication in X-chromosome inactivation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7350, doi. 10.1093/nar/gkac541

By:

Fontaine, Emeline;
Papin, Christophe;
Martinez, Guillaume;
Le Gras, Stéphanie;
Nahed, Roland Abi;
Héry, Patrick;
Buchou, Thierry;
Ouararhni, Khalid;
Favier, Bertrand;
Gautier, Thierry;
Sabir, Jamal S M;
Gerard, Matthieu;
Bednar, Jan;
Arnoult, Christophe;
Dimitrov, Stefan;
Hamiche, Ali

Publication type:

Article

Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7260, doi. 10.1093/nar/gkac537

By:

Miller, Henry E;
Montemayor, Daniel;
Abdul, Jebriel;
Vines, Anna;
Levy, Simon A;
Hartono, Stella R;
Sharma, Kumar;
Frost, Bess;
Chédin, Frédéric;
Bishop, Alexander J R

Publication type:

Article

Characterizing locus specific chromatin structure and dynamics with correlative conventional and super-resolution imaging in living cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e78, doi. 10.1093/nar/gkac314

By:

Mehra, Dushyant;
Adhikari, Santosh;
Banerjee, Chiranjib;
Puchner, Elias M

Publication type:

Article

Efficient golden gate assembly of DNA constructs for single molecule force spectroscopy and imaging.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e77, doi. 10.1093/nar/gkac300

By:

Bell, Nicholas A W;
Molloy, Justin E

Publication type:

Article

How clear is our current view on microbial dark matter? (Re-)assessing public MAG & SAG datasets with MDMcleaner.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e76, doi. 10.1093/nar/gkac294

By:

Vollmers, John;
Wiegand, Sandra;
Lenk, Florian;
Kaster, Anne-Kristin

Publication type:

Article

DEPhT: a novel approach for efficient prophage discovery and precise extraction.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e75, doi. 10.1093/nar/gkac273

By:

Gauthier, Christian H;
Abad, Lawrence;
Venbakkam, Ananya K;
Malnak, Julia;
Russell, Daniel A;
Hatfull, Graham F

Publication type:

Article

molecular beacon assay for monitoring RNA splicing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e74, doi. 10.1093/nar/gkac242

By:

Omran, Qusay Q;
Fedorova, Olga;
Liu, Tianshuo;
Pyle, Anna M

Publication type:

Article

QRNAstruct: a method for extracting secondary structural features of RNA via regression with biological activity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e73, doi. 10.1093/nar/gkac220

By:

Terai, Goro;
Asai, Kiyoshi

Publication type:

Article

tRNA modifying enzyme as a tunable regulatory nexus for bacterial stress responses and virulence.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7570, doi. 10.1093/nar/gkac116

By:

Fleming, Brittany A;
Blango, Matthew G;
Rousek, Alexis A;
Kincannon, William M;
Tran, Alexander;
Lewis, Adam J;
Russell, Colin W;
Zhou, Qin;
Baird, Lisa M;
Barber, Amelia E;
Brannon, John R;
Beebout, Connor J;
Bandarian, Vahe;
Hadjifrangiskou, Maria;
Howard, Michael T;
Mulvey, Matthew A

Publication type:

Article

Membrane-dependent relief of translation elongation arrest on pseudouridine- and N1-methyl-pseudouridine-modified mRNAs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. 7202, doi. 10.1093/nar/gkab1241

By:

Svitkin, Yuri V;
Gingras, Anne-Claude;
Sonenberg, Nahum

Publication type:

Article