Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 1

Results: 46

Prioritization of regulatory variants with tissue-specific function in the non-coding regions of human genome.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. e6, doi. 10.1093/nar/gkab924

By:

Dong, Shengcheng;
Boyle, Alan P

Publication type:

Article

Coupling high-throughput mapping with proteomics analysis delineates cis-regulatory elements at high resolution.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. e5, doi. 10.1093/nar/gkab890

By:

Wu, Ting;
Jiang, Danli;
Zou, Meijuan;
Sun, Wei;
Wu, Di;
Cui, Jing;
Huntress, Ian;
Peng, Xinxia;
Li, Gang

Publication type:

Article

SBSA: an online service for somatic binding sequence annotation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. e4, doi. 10.1093/nar/gkab877

By:

Jiang, Limin;
Guo, Fei;
Tang, Jijun;
Yu, Hui;
Ness, Scott;
Duan, Mingrui;
Mao, Peng;
Zhao, Ying-Yong;
Guo, Yan

Publication type:

Article

Ethylenediamine derivatives efficiently react with oxidized RNA 3′ ends providing access to mono and dually labelled RNA probes for enzymatic assays and in vivo translation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. e3, doi. 10.1093/nar/gkab867

By:

Mamot, Adam;
Sikorski, Pawel J;
Siekierska, Aleksandra;
Witte, Peter de;
Kowalska, Joanna;
Jemielity, Jacek

Publication type:

Article

Chemical capping improves template switching and enhances sequencing of small RNAs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. e2, doi. 10.1093/nar/gkab861

By:

Wulf, Madalee G;
Maguire, Sean;
Dai, Nan;
Blondel, Alice;
Posfai, Dora;
Krishnan, Keerthana;
Sun, Zhiyi;
Guan, Shengxi;
Corrêa, Ivan R

Publication type:

Article

Duplex-Repair enables highly accurate sequencing, despite DNA damage.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. e1, doi. 10.1093/nar/gkab855

By:

Xiong, Kan;
Shea, Douglas;
Rhoades, Justin;
Blewett, Timothy;
Liu, Ruolin;
Bae, Jin H;
Nguyen, Erica;
Makrigiorgos, G Mike;
Golub, Todd R;
Adalsteinsson, Viktor A

Publication type:

Article

Three human RNA polymerases interact with TFIIH via a common RPB6 subunit.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 1, doi. 10.1093/nar/gkab612

By:

Okuda, Masahiko;
Suwa, Tetsufumi;
Suzuki, Hidefumi;
Yamaguchi, Yuki;
Nishimura, Yoshifumi

Publication type:

Article

Correction to 'The double-stranded RNA-binding protein, Staufen1, is an IRES-transacting factor regulating HIV-1 cap-independent translation initiation'.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 599, doi. 10.1093/nar/gkab1266

By:

Ramos, Hade;
Monette, Anne;
Niu, Meijuan;
Barrera, Aldo;
López-Ulloa, Brenda;
Fuentes, Yazmín;
Guizar, Paola;
Pino, Karla;
DesGroseillers, Luc;
Mouland, Andrew J;
López-Lastra, Marcelo

Publication type:

Article

Correction to 'BAP18 coactivates androgen receptor action and promotes prostate cancer progression'.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 597, doi. 10.1093/nar/gkab1265

By:

Sun, Shiying;
Zhong, Xinping;
Wang, Chunyu;
Sun, Hongmiao;
Wang, Shengli;
Zhou, Tingting;
Zou, Renlong;
Lin, Lin;
Sun, Ning;
Sun, Ge;
Wu, Yi;
Wang, Botao;
Song, Xiaoyu;
Cao, Liu;
Zhao, Yue

Publication type:

Article

minimal motif for sequence recognition by mitochondrial transcription factor A (TFAM).

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 322, doi. 10.1093/nar/gkab1230

By:

Choi, Woo Suk;
Garcia-Diaz, Miguel

Publication type:

Article

RpoN/Sfa2-dependent activation of the Pseudomonas aeruginosa H2-T6SS and its cognate arsenal of antibacterial toxins.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 227, doi. 10.1093/nar/gkab1254

By:

Allsopp, Luke P;
Collins, Alice C Z;
Hawkins, Eleanor;
Wood, Thomas E;
Filloux, Alain

Publication type:

Article

Targeting genomic SARS-CoV-2 RNA with siRNAs allows efficient inhibition of viral replication and spread.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 333, doi. 10.1093/nar/gkab1248

By:

Ambike, Shubhankar;
Cheng, Cho-Chin;
Feuerherd, Martin;
Velkov, Stoyan;
Baldassi, Domizia;
Afridi, Suliman Qadir;
Porras-Gonzalez, Diana;
Wei, Xin;
Hagen, Philipp;
Kneidinger, Nikolaus;
Stoleriu, Mircea Gabriel;
Grass, Vincent;
Burgstaller, Gerald;
Pichlmair, Andreas;
Merkel, Olivia M;
Ko, Chunkyu;
Michler, Thomas

Publication type:

Article

CTCF-mediated chromatin looping provides a topological framework for the formation of phase-separated transcriptional condensates.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 207, doi. 10.1093/nar/gkab1242

By:

Lee, Ryanggeun;
Kang, Moo-Koo;
Kim, Yong-Jin;
Yang, Bobae;
Shim, Hwanyong;
Kim, Sugyung;
Kim, Kyungwoo;
Yang, Chul Min;
Min, Byeong-gyu;
Jung, Woong-Jae;
Lee, Eun-Chong;
Joo, Jung-Sik;
Park, Gunhee;
Cho, Won-Ki;
Kim, Hyoung-Pyo

Publication type:

Article

RNA self-splicing by engineered hairpin ribozyme variants.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 368, doi. 10.1093/nar/gkab1239

By:

Hieronymus, Robert;
Zhu, Jikang;
Müller, Sabine

Publication type:

Article

cLoops2: a full-stack comprehensive analytical tool for chromatin interactions.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 57, doi. 10.1093/nar/gkab1233

By:

Cao, Yaqiang;
Liu, Shuai;
Ren, Gang;
Tang, Qingsong;
Zhao, Keji

Publication type:

Article

Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 350, doi. 10.1093/nar/gkab1249

By:

De, Sandip;
Edwards, David M;
Dwivedi, Vibha;
Wang, Jianming;
Varsally, Wazeer;
Dixon, Hannah L;
Singh, Anand K;
Owuamalam, Precious O;
Wright, Matthew T;
Summers, Reece P;
Hossain, Md Nazmul;
Price, Emily M;
Wojewodzic, Marcin W;
Falciani, Francesco;
Hodges, Nikolas J;
Saponaro, Marco;
Tanaka, Kayoko;
Azzalin, Claus M;
Baumann, Peter;
Hebenstreit, Daniel

Publication type:

Article

telomeric 5′ end nucleotide is regulated in the budding yeast Naumovozyma castellii.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 281, doi. 10.1093/nar/gkab1229

By:

Itriago, Humberto;
Jaiswal, Rishi K;
Philipp, Susanne;
Cohn, Marita

Publication type:

Article

Canonical and novel non-canonical activities of the Holliday junction resolvase Yen1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 259, doi. 10.1093/nar/gkab1225

By:

Carreira, Raquel;
Aguado, F Javier;
Hurtado-Nieves, Vanesa;
Blanco, Miguel G

Publication type:

Article

Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 473, doi. 10.1093/nar/gkab1224

By:

Fasnacht, Michel;
Gallo, Stefano;
Sharma, Puneet;
Himmelstoß, Maximilian;
Limbach, Patrick A;
Willi, Jessica;
Polacek, Norbert

Publication type:

Article

HIRA complex presets transcriptional potential through coordinating depositions of the histone variants H3.3 and H2A.Z on the poised genes in mESCs.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 191, doi. 10.1093/nar/gkab1221

By:

Yang, Yang;
Zhang, Liwei;
Xiong, Chaoyang;
Chen, Jun;
Wang, Li;
Wen, Zengqi;
Yu, Juan;
Chen, Ping;
Xu, Yanhui;
Jin, Jingji;
Cai, Yong;
Li, Guohong

Publication type:

Article

Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 536, doi. 10.1093/nar/gkab1220

By:

Qiu, Chen;
Wine, Robert N;
Campbell, Zachary T;
Hall, Traci M Tanaka

Publication type:

Article

Mutation and selection explain why many eukaryotic centromeric DNA sequences are often A + T rich.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 579, doi. 10.1093/nar/gkab1219

By:

Barbosa, Anne C;
Xu, Zhengyao;
Karari, Kazhal;
Williams, Wendi;
Hauf, Silke;
Brown, William R A

Publication type:

Article

Zebularine induces enzymatic DNA–protein crosslinks in 45S rDNA heterochromatin of Arabidopsis nuclei.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 244, doi. 10.1093/nar/gkab1218

By:

Prochazkova, Klara;
Finke, Andreas;
Tomaštíková, Eva Dvořák;
Filo, Jaroslav;
Bente, Heinrich;
Dvořák, Petr;
Ovečka, Miroslav;
Šamaj, Jozef;
Pecinka, Ales

Publication type:

Article

Structural basis of dimerization and nucleic acid binding of human DBHS proteins NONO and PSPC1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 522, doi. 10.1093/nar/gkab1216

By:

Knott, Gavin J;
Chong, Yee Seng;
Passon, Daniel M;
Liang, Xue-hai;
Deplazes, Evelyne;
Conte, Maria R;
Marshall, Andrew C;
Lee, Mihwa;
Fox, Archa H;
Bond, Charles S

Publication type:

Article

Super resolution microscopy reveals how elongating RNA polymerase II and nascent RNA interact with nucleosome clutches.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 175, doi. 10.1093/nar/gkab1215

By:

Castells-Garcia, Alvaro;
Ed-daoui, Ilyas;
González-Almela, Esther;
Vicario, Chiara;
Ottestrom, Jason;
Lakadamyali, Melike;
Neguembor, Maria Victoria;
Cosma, Maria Pia

Publication type:

Article

Rational design and construction of multi-copy biomanufacturing islands in mammalian cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 561, doi. 10.1093/nar/gkab1214

By:

Altamura, Raffaele;
Doshi, Jiten;
Benenson, Yaakov

Publication type:

Article

Nuclear poly(A) binding protein 1 (PABPN1) mediates zygotic genome activation-dependent maternal mRNA clearance during mouse early embryonic development.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 458, doi. 10.1093/nar/gkab1213

By:

Zhao, Long-Wen;
Zhu, Ye-Zhang;
Wu, Yun-Wen;
Pi, Shuai-Bo;
Shen, Li;
Fan, Heng-Yu

Publication type:

Article

Recognition of G-quadruplex RNA by a crucial RNA methyltransferase component, METTL14.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 449, doi. 10.1093/nar/gkab1211

By:

Yoshida, Atsuhiro;
Oyoshi, Takanori;
Suda, Akiyo;
Futaki, Shiroh;
Imanishi, Miki

Publication type:

Article

Type I CRISPR-Cas provides robust immunity but incomplete attenuation of phage-induced cellular stress.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 160, doi. 10.1093/nar/gkab1210

By:

Malone, Lucia M;
Hampton, Hannah G;
Morgan, Xochitl C;
Fineran, Peter C

Publication type:

Article

Identification and targeting of G-quadruplex structures in MALAT1 long non-coding RNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 397, doi. 10.1093/nar/gkab1208

By:

Mou, Xi;
Liew, Shiau Wei;
Kwok, Chun Kit

Publication type:

Article

novel role for gag as a cis-acting element regulating RNA structure, dimerization and packaging in HIV-1 lentiviral vectors.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 430, doi. 10.1093/nar/gkab1206

By:

Vamva, Eirini;
Griffiths, Alex;
Vink, Conrad A;
Lever, Andrew M L;
Kenyon, Julia C

Publication type:

Article

flip-flop configuration of the PABP-dimer leads to switching of the translation function.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 306, doi. 10.1093/nar/gkab1205

By:

Gu, Sohyun;
Jeon, Hyung-Min;
Nam, Seung Woo;
Hong, Ka Young;
Rahman, Md Shafiqur;
Lee, Jong-Bong;
Kim, Youngjin;
Jang, Sung Key

Publication type:

Article

High throughput single-cell genome sequencing gives insights into the generation and evolution of mosaic aneuploidy in Leishmania donovani.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 293, doi. 10.1093/nar/gkab1203

By:

Negreira, Gabriel H;
Monsieurs, Pieter;
Imamura, Hideo;
Maes, Ilse;
Kuk, Nada;
Yagoubat, Akila;
Van den Broeck, Frederik;
Sterkers, Yvon;
Dujardin, Jean-Claude;
Domagalska, Malgorzata A

Publication type:

Article

Kinetic explanations for the sequence biases observed in the nonenzymatic copying of RNA templates.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 35, doi. 10.1093/nar/gkab1202

By:

Ding, Dian;
Zhou, Lijun;
Giurgiu, Constantin;
Szostak, Jack W

Publication type:

Article

Palmitic acid conjugation enhances potency of tricyclo-DNA splice switching oligonucleotides.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 17, doi. 10.1093/nar/gkab1199

By:

Relizani, Karima;
Echevarría, Lucía;
Zarrouki, Faouzi;
Gastaldi, Cécile;
Dambrune, Chloe;
Aupy, Philippine;
Haeberli, Adrian;
Komisarski, Marek;
Tensorer, Thomas;
Larcher, Thibaut;
Svinartchouk, Fedor;
Vaillend, Cyrille;
Garcia, Luis;
Goyenvalle, Aurélie

Publication type:

Article

Inhibition mechanisms of CRISPR-Cas9 by AcrIIA17 and AcrIIA18.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 512, doi. 10.1093/nar/gkab1197

By:

Wang, Xiaoshen;
Li, Xuzichao;
Ma, Yongjian;
He, Jiaqi;
Liu, Xiang;
Yu, Guimei;
Yin, Hang;
Zhang, Heng

Publication type:

Article

Genome-wide mapping of Vibrio cholerae VpsT binding identifies a mechanism for c-di-GMP homeostasis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 149, doi. 10.1093/nar/gkab1194

By:

Guest, Thomas;
Haycocks, James R J;
Warren, Gemma Z L;
Grainger, David C

Publication type:

Article

Multiplexed activation in mammalian cells using a split-intein CRISPR/Cas12a based synthetic transcription factor.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 549, doi. 10.1093/nar/gkab1191

By:

Bryson, James W;
Auxillos, Jamie Y;
Rosser, Susan J

Publication type:

Article

double-stranded RNA-binding protein, Staufen1, is an IRES-transacting factor regulating HIV-1 cap-independent translation initiation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 411, doi. 10.1093/nar/gkab1188

By:

Ramos, Hade;
Monette, Anne;
Niu, Meijuan;
Barrera, Aldo;
López-Ulloa, Brenda;
Fuentes, Yazmín;
Guizar, Paola;
Pino, Karla;
DesGroseillers, Luc;
Mouland, Andrew J;
López-Lastra, Marcelo

Publication type:

Article

PsrA is a novel regulator contributes to antibiotic synthesis, bacterial virulence, cell motility and extracellular polysaccharides production in Serratia marcescens.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 127, doi. 10.1093/nar/gkab1186

By:

Pan, Xuewei;
Tang, Mi;
You, Jiajia;
Osire, Tolbert;
Sun, Changhao;
Fu, Weilai;
Yi, Ganfeng;
Yang, Taowei;
Yang, Shang-Tian;
Rao, Zhiming

Publication type:

Article

Structural basis of DNA methylation-dependent site selectivity of the Epstein–Barr virus lytic switch protein ZEBRA/Zta/BZLF1.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 490, doi. 10.1093/nar/gkab1183

By:

Bernaudat, Florent;
Gustems, Montse;
Günther, Johannes;
Oliva, Mizar F;
Buschle, Alexander;
Göbel, Christine;
Pagniez, Priscilla;
Lupo, Julien;
Signor, Luca;
Müller, Christoph W;
Morand, Patrice;
Sattler, Michael;
Hammerschmidt, Wolfgang;
Petosa, Carlo

Publication type:

Article

Coordinated glucocorticoid receptor and MAFB action induces tolerogenesis and epigenome remodeling in dendritic cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 108, doi. 10.1093/nar/gkab1182

By:

Morante-Palacios, Octavio;
Ciudad, Laura;
Micheroli, Raphael;
de la Calle-Fabregat, Carlos;
Li, Tianlu;
Barbisan, Gisela;
Houtman, Miranda;
Edalat, Sam G;
Frank-Bertoncelj, Mojca;
Ospelt, Caroline;
Ballestar, Esteban

Publication type:

Article

Dynamic modulation of enhancer responsiveness by core promoter elements in living Drosophila embryos.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 92, doi. 10.1093/nar/gkab1177

By:

Yokoshi, Moe;
Kawasaki, Koji;
Cambón, Manuel;
Fukaya, Takashi

Publication type:

Article

MarkovHC: Markov hierarchical clustering for the topological structure of high-dimensional single-cell omics data with transition pathway and critical point detection.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 46, doi. 10.1093/nar/gkab1132

By:

Wang, Zhenyi;
Zhong, Yanjie;
Ye, Zhaofeng;
Zeng, Lang;
Chen, Yang;
Shi, Minglei;
Yuan, Zhiyuan;
Zhou, Qiming;
Qian, Minping;
Zhang, Michael Q

Publication type:

Article

Alternative splicing modulation mediated by G-quadruplex structures in MALAT1 lncRNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 378, doi. 10.1093/nar/gkab1066

By:

Ghosh, Arpita;
Pandey, Satya Prakash;
Ansari, Asgar Hussain;
Sundar, Jennifer Seematti;
Singh, Praveen;
Khan, Yasmeen;
Ekka, Mary Krishna;
Chakraborty, Debojyoti;
Maiti, Souvik

Publication type:

Article

Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 72, doi. 10.1093/nar/gkab1137

By:

Hirai, Seiya;
Tomimatsu, Kosuke;
Miyawaki-Kuwakado, Atsuko;
Takizawa, Yoshimasa;
Komatsu, Tetsuro;
Tachibana, Taro;
Fukushima, Yutaro;
Takeda, Yasuko;
Negishi, Lumi;
Kujirai, Tomoya;
Koyama, Masako;
Ohkawa, Yasuyuki;
Kurumizaka, Hitoshi

Publication type:

Article