Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 6

Results: 47

Binding site profiles and N-terminal minor groove interactions of the master quorum-sensing regulator LuxR enable flexible control of gene activation and repression.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3274, doi. 10.1093/nar/gkab150

By:

Zhang, Jun;
Liu, Bing;
Gu, Dan;
Hao, Yuan;
Chen, Mo;
Ma, Yue;
Zhou, Xiaohui;
Reverter, David;
Zhang, Yuanxing;
Wang, Qiyao

Publication type:

Article

De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3092, doi. 10.1093/nar/gkab119

By:

Rangan, Ramya;
Watkins, Andrew M;
Chacon, Jose;
Kretsch, Rachael;
Kladwang, Wipapat;
Zheludev, Ivan N;
Townley, Jill;
Rynge, Mats;
Thain, Gregory;
Das, Rhiju

Publication type:

Article

Corrigendum to article "A programmable omnipotent Argonaute nuclease from mesophilic bacteria Kurthia massiliensis".

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3600, doi. 10.1093/nar/gkab192

By:

Liu, Yang;
Li, Wenqiang;
Jiang, Xiaoman;
Wang, Yaping;
Zhang, Zhiwei;
Liu, Qi;
He, Ruyi;
Chen, Quan;
Yang, Jun;
Wang, Longyu;
Wang, Fei;
Ma, Lixin

Publication type:

Article

Corrigendum to article 'Hibernation factors directly block ribonucleases from entering the ribosome in response to starvation'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3599, doi. 10.1093/nar/gkab170

By:

Prossliner, Thomas;
Gerdes, Kenn;
Sørensen, Michael Askvad;
Winther, Kristoffer Skovbo

Publication type:

Article

Editorial Expression of Concern on article 'CK1δ modulates the transcriptional activity of ERα via AIB1 in an estrogen-dependent manner and regulates ERα–AIB1 interactions'.

Published in:: Nucleic Acids Research, 2021, v. 49, n. 6, p. 3602, doi. 10.1093/nar/gkab172
Publication type:: Article

Editorial Expression of Concern on article 'Functional dissection of the C-terminal domain of type II DNA topoisomerase from the kinetoplastid hemoflagellate Leishmania donovani'.

Published in:: Nucleic Acids Research, 2021, v. 49, n. 6, p. 3601, doi. 10.1093/nar/gkab171
Publication type:: Article

Disruption of exon-bridging interactions between the minor and major spliceosomes results in alternative splicing around minor introns.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3524, doi. 10.1093/nar/gkab118

By:

Olthof, Anouk M;
White, Alisa K;
Mieruszynski, Stephen;
Doggett, Karen;
Lee, Madisen F;
Chakroun, Almahdi;
Abdel Aleem, Alice K;
Rousseau, Justine;
Magnani, Cinzia;
Roifman, Chaim M;
Campeau, Philippe M;
Heath, Joan K;
Kanadia, Rahul N

Publication type:

Article

The small DUF1127 protein CcaF1 from Rhodobacter sphaeroides is an RNA-binding protein involved in sRNA maturation and RNA turnover.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3003, doi. 10.1093/nar/gkab146

By:

Grützner, Julian;
Billenkamp, Fabian;
Spanka, Daniel-Timon;
Rick, Tim;
Monzon, Vivian;
Förstner, Konrad U;
Klug, Gabriele

Publication type:

Article

Significant non-existence of sequences in genomes and proteomes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3139, doi. 10.1093/nar/gkab139

By:

Koulouras, Grigorios;
Frith, Martin C

Publication type:

Article

A CRISPR-Cas9–integrase complex generates precise DNA fragments for genome integration.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3546, doi. 10.1093/nar/gkab123

By:

Jakhanwal, Shrutee;
Cress, Brady F;
Maguin, Pascal;
Lobba, Marco J;
Marraffini, Luciano A;
Doudna, Jennifer A

Publication type:

Article

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3409, doi. 10.1093/nar/gkab117

By:

Catalan-Moreno, Arancha;
Cela, Marta;
Menendez-Gil, Pilar;
Irurzun, Naiara;
Caballero, Carlos J;
Caldelari, Isabelle;
Toledo-Arana, Alejandro

Publication type:

Article

Long-read sequencing and de novo genome assemblies reveal complex chromosome end structures caused by telomere dysfunction at the single nucleotide level.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3338, doi. 10.1093/nar/gkab141

By:

Kim, Eunkyeong;
Kim, Jun;
Kim, Chuna;
Lee, Junho

Publication type:

Article

Frustrated folding of guanine quadruplexes in telomeric DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3063, doi. 10.1093/nar/gkab140

By:

Carrino, Simone;
Hennecker, Christopher D;
Murrieta, Ana C;
Mittermaier, Anthony

Publication type:

Article

Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3507, doi. 10.1093/nar/gkab116

By:

Naarmann-de Vries, Isabel S;
Senatore, Roberta;
Moritz, Bodo;
Marx, Gernot;
Urlaub, Henning;
Niessing, Dierk;
Ostareck, Dirk H;
Ostareck-Lederer, Antje

Publication type:

Article

Xenogeneic silencing relies on temperature-dependent phosphorylation of the host H-NS protein in Shewanella.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3427, doi. 10.1093/nar/gkab137

By:

Liu, Xiaoxiao;
Lin, Shituan;
Liu, Tianlang;
Zhou, Yiqing;
Wang, Weiquan;
Yao, Jianyun;
Guo, Yunxue;
Tang, Kaihao;
Chen, Ran;
Benedik, Michael J;
Wang, Xiaoxue

Publication type:

Article

DOCK7 protects against replication stress by promoting RPA stability on chromatin.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3322, doi. 10.1093/nar/gkab134

By:

Gao, Ming;
Guo, Guijie;
Huang, Jinzhou;
Hou, Xiaonan;
Ham, Hyoungjun;
Kim, Wootae;
Zhao, Fei;
Tu, Xinyi;
Zhou, Qin;
Zhang, Chao;
Zhu, Qian;
Liu, Jiaqi;
Yan, Yuanliang;
Xu, Zhijie;
Yin, Ping;
Luo, Kuntian;
Weroha, John;
Deng, Min;
Billadeau, Daniel D;
Lou, Zhenkun

Publication type:

Article

Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3127, doi. 10.1093/nar/gkab133

By:

Dion, Moïra B;
Plante, Pier-Luc;
Zufferey, Edwige;
Shah, Shiraz A;
Corbeil, Jacques;
Moineau, Sylvain

Publication type:

Article

A novel RNA pol II CTD interaction site on the mRNA capping enzyme is essential for its allosteric activation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3109, doi. 10.1093/nar/gkab130

By:

Bage, Marcus G;
Almohammed, Rajaei;
Cowling, Victoria H;
Pisliakov, Andrei V

Publication type:

Article

Trypanosome RNAEditing Substrate Binding Complex integrity and function depends on the upstream action of RESC10.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3557, doi. 10.1093/nar/gkab129

By:

Dubey, Ashutosh P;
Tylec, Brianna L;
McAdams, Natalie M;
Sortino, Katherine;
Read, Laurie K

Publication type:

Article

Targeted-antibacterial-plasmids (TAPs) combining conjugation and CRISPR/Cas systems achieve strain-specific antibacterial activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3584, doi. 10.1093/nar/gkab126

By:

Reuter, Audrey;
Hilpert, Cécile;
Dedieu-Berne, Annick;
Lematre, Sophie;
Gueguen, Erwan;
Launay, Guillaume;
Bigot, Sarah;
Lesterlin, Christian

Publication type:

Article

Oligomeric complexes formed by Redβ single strand annealing protein in its different DNA bound states.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3441, doi. 10.1093/nar/gkab125

By:

Caldwell, Brian J;
Norris, Andrew;
Zakharova, Ekaterina;
Smith, Christopher E;
Wheat, Carter T;
Choudhary, Deepanshu;
Sotomayor, Marcos;
Wysocki, Vicki H;
Bell, Charles E

Publication type:

Article

Reactive astrocytes in ALS display diminished intron retention.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3168, doi. 10.1093/nar/gkab115

By:

Ziff, Oliver J;
Taha, Doaa M;
Crerar, Hamish;
Clarke, Benjamin E;
Chakrabarti, Anob M;
Kelly, Gavin;
Neeves, Jacob;
Tyzack, Giulia E;
Luscombe, Nicholas M;
Patani, Rickie

Publication type:

Article

Complete minicircle genome of Leptomonas pyrrhocoris reveals sources of its non-canonical mitochondrial RNA editing events.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3354, doi. 10.1093/nar/gkab114

By:

Gerasimov, Evgeny S;
Gasparyan, Anna A;
Afonin, Dmitry A;
Zimmer, Sara L;
Kraeva, Natalya;
Lukeš, Julius;
Yurchenko, Vyacheslav;
Kolesnikov, Alexander

Publication type:

Article

Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3394, doi. 10.1093/nar/gkab113

By:

Wegrzyn, Katarzyna;
Zabrocka, Elzbieta;
Bury, Katarzyna;
Tomiczek, Bartlomiej;
Wieczor, Milosz;
Czub, Jacek;
Uciechowska, Urszula;
Moreno-del Alamo, María;
Walkow, Urszula;
Grochowina, Igor;
Dutkiewicz, Rafal;
Bujnicki, Janusz M;
Giraldo, Rafael;
Konieczny, Igor

Publication type:

Article

BRCA1-BARD1 regulates transcription through BRD4 in Xenopus nucleoplasmic extract.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3263, doi. 10.1093/nar/gkab111

By:

Barrows, John K;
Fullbright, George;
Long, David T

Publication type:

Article

Microbial single-strand annealing proteins enable CRISPR gene-editing tools with improved knock-in efficiencies and reduced off-target effects.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. e36, doi. 10.1093/nar/gkaa1264

By:

Wang, Chengkun;
Cheng, Jason K W;
Zhang, Qianhe;
Hughes, Nicholas W;
Xia, Qiong;
Winslow, Monte M;
Cong, Le

Publication type:

Article

Gene-specific mutagenesis enables rapid continuous evolution of enzymes in vivo.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. e32, doi. 10.1093/nar/gkaa1231

By:

Park, Hyojin;
Kim, Seokhee

Publication type:

Article

A method for characterizing Cas9 variants via a one-million target sequence library of self-targeting sgRNAs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. e31, doi. 10.1093/nar/gkaa1220

By:

Tálas, András;
Huszár, Krisztina;
Kulcsár, Péter István;
Varga, Julia K;
Varga, Éva;
Tóth, Eszter;
Welker, Zsombor;
Erdős, Gergely;
Pach, Péter Ferenc;
Welker, Ágnes;
Györgypál, Zoltán;
Tusnády, Gábor E;
Welker, Ervin

Publication type:

Article

Spatial coupling between DNA replication and mismatch repair in Caulobacter crescentus.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3308, doi. 10.1093/nar/gkab112

By:

Chai, Tiancong;
Terrettaz, Céline;
Collier, Justine

Publication type:

Article

Staying true to yourself: mechanisms of DNA methylation maintenance in mammals.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3020, doi. 10.1093/nar/gkaa1154

By:

Petryk, Nataliya;
Bultmann, Sebastian;
Bartke, Till;
Defossez, Pierre-Antoine

Publication type:

Article

Barrier-to-autointegration-factor (Banf1) modulates DNA double-strand break repair pathway choice via regulation of DNA-dependent kinase (DNA-PK) activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3294, doi. 10.1093/nar/gkab110

By:

Burgess, Joshua T;
Cheong, Chee Man;
Suraweera, Amila;
Sobanski, Thais;
Beard, Sam;
Dave, Keyur;
Rose, Maddison;
Boucher, Didier;
Croft, Laura V;
Adams, Mark N;
O'Byrne, Kenneth;
Richard, Derek J;
Bolderson, Emma

Publication type:

Article

TbSAP is a novel chromatin protein repressing metacyclic variant surface glycoprotein expression sites in bloodstream form Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3242, doi. 10.1093/nar/gkab109

By:

Davies, Carys;
Ooi, Cher-Pheng;
Sioutas, Georgios;
Hall, Belinda S;
Sidhu, Haneesh;
Butter, Falk;
Alsford, Sam;
Wickstead, Bill;
Rudenko, Gloria

Publication type:

Article

Mechanisms of damage tolerance and repair during DNA replication.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3033, doi. 10.1093/nar/gkab101

By:

Ashour, Mohamed Elsaid;
Mosammaparast, Nima

Publication type:

Article

Epstein-Barr virus inactivates the transcriptome and disrupts the chromatin architecture of its host cell in the first phase of lytic reactivation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3217, doi. 10.1093/nar/gkab099

By:

Buschle, Alexander;
Mrozek-Gorska, Paulina;
Cernilogar, Filippo M;
Ettinger, Andreas;
Pich, Dagmar;
Krebs, Stefan;
Mocanu, Bianca;
Blum, Helmut;
Schotta, Gunnar;
Straub, Tobias;
Hammerschmidt, Wolfgang

Publication type:

Article

Unraveling the interaction between doxorubicin and DNA origami nanostructures for customizable chemotherapeutic drug release.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3048, doi. 10.1093/nar/gkab097

By:

Ijäs, Heini;
Shen, Boxuan;
Heuer-Jungemann, Amelie;
Keller, Adrian;
Kostiainen, Mauri A;
Liedl, Tim;
Ihalainen, Janne A;
Linko, Veikko

Publication type:

Article

A Hi–C data-integrated model elucidates E. coli chromosome's multiscale organization at various replication stages.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3077, doi. 10.1093/nar/gkab094

By:

Wasim, Abdul;
Gupta, Ankit;
Mondal, Jagannath

Publication type:

Article

Anti-CRISPR AcrIF9 functions by inducing the CRISPR–Cas complex to bind DNA non-specifically.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3381, doi. 10.1093/nar/gkab092

By:

Lu, Wang-Ting;
Trost, Chantel N;
Müller-Esparza, Hanna;
Randau, Lennart;
Davidson, Alan R

Publication type:

Article

Role of a local transcription factor in governing cellular carbon/nitrogen homeostasis in Pseudomonas fluorescens.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3204, doi. 10.1093/nar/gkab091

By:

Naren, Naran;
Zhang, Xue-Xian

Publication type:

Article

Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3185, doi. 10.1093/nar/gkab088

By:

Małecki, Jędrzej M;
Odonohue, Marie-Francoise;
Kim, Yeji;
Jakobsson, Magnus E;
Gessa, Luca;
Pinto, Rita;
Wu, Jie;
Davydova, Erna;
Moen, Anders;
Olsen, Jesper V;
Thiede, Bernd;
Gleizes, Pierre-Emmanuel;
Leidel, Sebastian A;
Falnes, Pål Ø

Publication type:

Article

Mechanism of forkhead transcription factors binding to a novel palindromic DNA site.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3573, doi. 10.1093/nar/gkab086

By:

Li, Jun;
Dai, Shuyan;
Chen, Xiaojuan;
Liang, Xujun;
Qu, Lingzhi;
Jiang, Longying;
Guo, Ming;
Zhou, Zhan;
Wei, Hudie;
Zhang, Huajun;
Chen, Zhuchu;
Chen, Lin;
Chen, Yongheng

Publication type:

Article

Analysing the yeast complexome—the Complex Portal rising to the challenge.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3156, doi. 10.1093/nar/gkab077

By:

Meldal, Birgit H M;
Pons, Carles;
Perfetto, Livia;
Del-Toro, Noemi;
Wong, Edith;
Aloy, Patrick;
Hermjakob, Henning;
Orchard, Sandra;
Porras, Pablo

Publication type:

Article

Interrogating accessibility of telomeric sequences with FRET-PAINT: evidence for length-dependent telomere compaction.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3371, doi. 10.1093/nar/gkab067

By:

Mustafa, Golam;
Shiekh, Sajad;
GC, Keshav;
Abeysirigunawardena, Sanjaya;
Balci, Hamza

Publication type:

Article

A RanBP2-type zinc finger protein functions in intron splicing in Arabidopsis mitochondria and is involved in the biogenesis of respiratory complex I.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3490, doi. 10.1093/nar/gkab066

By:

Bentolila, Stéphane;
Gipson, Andrew B;
Kehl, Alexander J;
Hamm, Lauren N;
Hayes, Michael L;
Mulligan, R Michael;
Hanson, Maureen R

Publication type:

Article

Characterizing and circumventing sequence restrictions for synthesis of circular RNA in vitro.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. e35, doi. 10.1093/nar/gkaa1256

By:

Rausch, Jason W;
Heinz, William F;
Payea, Matthew J;
Sherpa, Chringma;
Gorospe, Myriam;
Le Grice, Stuart F J

Publication type:

Article

A novel SHAPE reagent enables the analysis of RNA structure in living cells with unprecedented accuracy.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. e34, doi. 10.1093/nar/gkaa1255

By:

Marinus, Tycho;
Fessler, Adam B;
Ogle, Craig A;
Incarnato, Danny

Publication type:

Article

mTORC1 promotes TOP mRNA translation through site-specific phosphorylation of LARP1.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. 3461, doi. 10.1093/nar/gkaa1239

By:

Jia, Jian-Jun;
Lahr, Roni M;
Solgaard, Michael T;
Moraes, Bruno J;
Pointet, Roberta;
Yang, An-Dao;
Celucci, Giovanna;
Graber, Tyson E;
Hoang, Huy-Dung;
Niklaus, Marius R;
Pena, Izabella A;
Hollensen, Anne K;
Smith, Ewan M;
Chaker-Margot, Malik;
Anton, Leonie;
Dajadian, Christopher;
Livingstone, Mark;
Hearnden, Jaclyn;
Wang, Xu-Dong;
Yu, Yonghao

Publication type:

Article

SurVirus: a repeat-aware virus integration caller.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 6, p. e33, doi. 10.1093/nar/gkaa1237

By:

Rajaby, Ramesh;
Zhou, Yi;
Meng, Yifan;
Zeng, Xi;
Li, Guoliang;
Wu, Peng;
Sung, Wing-Kin

Publication type:

Article