Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 3

Results: 27

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1801, doi. 10.1093/nar/gkab018

By:

Chawla, Smriti;
Samydurai, Sudhagar;
Kong, Say Li;
Wu, Zhengwei;
Wang, Zhenxun;
TAM, Wai Leong;
Sengupta, Debarka;
Kumar, Vibhor

Publication type:

Article

Vibrio cholerae FruR facilitates binding of RNA polymerase to the fru promoter in the presence of fructose 1-phosphate.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1397, doi. 10.1093/nar/gkab013

By:

Yoon, Chang-Kyu;
Kang, Deborah;
Kim, Min-Kyu;
Seok, Yeong-Jae

Publication type:

Article

Super-enhancer mediated regulation of adult β-globin gene expression: the role of eRNA and Integrator.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1383, doi. 10.1093/nar/gkab002

By:

Gurumurthy, Aishwarya;
Yu, David T;
Stees, Jared R;
Chamales, Pamela;
Gavrilova, Ekaterina;
Wassel, Paul;
Li, Lu;
Stribling, Daniel;
Chen, Jinyang;
Brackett, Marissa;
Ishov, Alexander M;
Xie, Mingyi;
Bungert, Jörg

Publication type:

Article

Guide-target mismatch effects on dCas9–sgRNA binding activity in living bacterial cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1263, doi. 10.1093/nar/gkaa1295

By:

Feng, Huibao;
Guo, Jiahui;
Wang, Tianmin;
Zhang, Chong;
Xing, Xin-hui

Publication type:

Article

Parallel reaction pathways accelerate folding of a guanine quadruplex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1247, doi. 10.1093/nar/gkaa1286

By:

Harkness, Robert W;
Hennecker, Christopher;
Grün, J Tassilo;
Blümler, Anja;
Heckel, Alexander;
Schwalbe, Harald;
Mittermaier, Anthony K

Publication type:

Article

The solution structures of higher-order human telomere G-quadruplex multimers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1749, doi. 10.1093/nar/gkaa1285

By:

Monsen, Robert C;
Chakravarthy, Srinivas;
Dean, William L;
Chaires, Jonathan B;
Trent, John O

Publication type:

Article

Ligand-dependent tRNA processing by a rationally designed RNase P riboswitch.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1784, doi. 10.1093/nar/gkaa1282

By:

Ender, Anna;
Etzel, Maja;
Hammer, Stefan;
Findeiß, Sven;
Stadler, Peter;
Mörl, Mario

Publication type:

Article

Ionic liquids: prospects for nucleic acid handling and delivery.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1201, doi. 10.1093/nar/gkaa1280

By:

Egorova, Ksenia S;
Posvyatenko, Alexandra V;
Larin, Sergey S;
Ananikov, Valentine P

Publication type:

Article

First insights into the structural features of Ebola virus methyltransferase activities.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1737, doi. 10.1093/nar/gkaa1276

By:

Valle, Coralie;
Martin, Baptiste;
Ferron, François;
Roig-Zamboni, Véronique;
Desmyter, Aline;
Debart, Françoise;
Vasseur, Jean-Jacques;
Canard, Bruno;
Coutard, Bruno;
Decroly, Etienne

Publication type:

Article

Ecd promotes U5 snRNP maturation and Prp8 stability.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1688, doi. 10.1093/nar/gkaa1274

By:

Erkelenz, Steffen;
Stanković, Dimitrije;
Mundorf, Juliane;
Bresser, Tina;
Claudius, Ann-Katrin;
Boehm, Volker;
Gehring, Niels H;
Uhlirova, Mirka

Publication type:

Article

Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1294, doi. 10.1093/nar/gkaa1270

By:

Gerguri, Tereza;
Fu, Xiao;
Kakui, Yasutaka;
Khatri, Bhavin S;
Barrington, Christopher;
Bates, Paul A;
Uhlmann, Frank

Publication type:

Article

Pentapeptide repeat protein QnrB1 requires ATP hydrolysis to rejuvenate poisoned gyrase complexes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1581, doi. 10.1093/nar/gkaa1266

By:

Mazurek, Łukasz;
Ghilarov, Dmitry;
Michalczyk, Elizabeth;
Pakosz, Zuzanna;
Metelev, Mikhail;
Czyszczoń, Wojciech;
Wawro, Karolina;
Behroz, Iraj;
Dubiley, Svetlana;
Süssmuth, Roderich D;
Heddle, Jonathan G

Publication type:

Article

Bulges in left-handed G-quadruplexes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1724, doi. 10.1093/nar/gkaa1259

By:

Das, Poulomi;
Ngo, Khac Huy;
Winnerdy, Fernaldo Richtia;
Maity, Arijit;
Bakalar, Blaž;
Mechulam, Yves;
Schmitt, Emmanuelle;
Phan, Anh Tuân

Publication type:

Article

Micro-homology intermediates: RecA's transient sampling revealed at the single molecule level.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1426, doi. 10.1093/nar/gkaa1258

By:

Lee, Andrew J;
Endo, Masayuki;
Hobbs, Jamie K;
Davies, A Giles;
Wälti, Christoph

Publication type:

Article

Small molecules inhibitors of the heterogeneous ribonuclear protein A18 (hnRNP A18): a regulator of protein translation and an immune checkpoint.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1235, doi. 10.1093/nar/gkaa1254

By:

Solano-Gonzalez, Eduardo;
Coburn, Katherine M;
Yu, Wenbo;
Wilson, Gerald M;
Nurmemmedov, Elmar;
Kesari, Santosh;
Chang, Elizabeth T;
MacKerell, Alexander D;
Weber, David J;
Carrier, France

Publication type:

Article

Atomic resolution of short-range sliding dynamics of thymine DNA glycosylase along DNA minor-groove for lesion recognition.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1278, doi. 10.1093/nar/gkaa1252

By:

Tian, Jiaqi;
Wang, Lingyan;
Da, Lin-Tai

Publication type:

Article

Crystal structure of a tick-borne flavivirus RNA-dependent RNA polymerase suggests a host adaptation hotspot in RNA viruses.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1567, doi. 10.1093/nar/gkaa1250

By:

Yang, Jieyu;
Jing, Xuping;
Yi, Wenfu;
Li, Xiao-Dan;
Yao, Chen;
Zhang, Bo;
Zheng, Zhenhua;
Wang, Hanzhong;
Gong, Peng

Publication type:

Article

Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1708, doi. 10.1093/nar/gkaa1218

By:

Pastor, Michal;
Czapinska, Honorata;
Helbrecht, Igor;
Krakowska, Katarzyna;
Lutz, Thomas;
Xu, Shuang-yong;
Bochtler, Matthias

Publication type:

Article

A comprehensive epigenome atlas reveals DNA methylation regulating skeletal muscle development.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1313, doi. 10.1093/nar/gkaa1203

By:

Yang, Yalan;
Fan, Xinhao;
Yan, Junyu;
Chen, Muya;
Zhu, Min;
Tang, Yijie;
Liu, Siyuan;
Tang, Zhonglin

Publication type:

Article

A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1769, doi. 10.1093/nar/gkaa1167

By:

Postma, Eline D;
Dashko, Sofia;
van Breemen, Lars;
Taylor Parkins, Shannara K;
van den Broek, Marcel;
Daran, Jean-Marc;
Daran-Lapujade, Pascale

Publication type:

Article

Entropy subspace separation-based clustering for noise reduction (ENCORE) of scRNA-seq data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e18, doi. 10.1093/nar/gkaa1157

By:

Song, Jia;
Liu, Yao;
Zhang, Xuebing;
Wu, Qiuyue;
Gao, Juan;
Wang, Wei;
Li, Jin;
Song, Yanling;
Yang, Chaoyong

Publication type:

Article

To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e17, doi. 10.1093/nar/gkaa1155

By:

Xu, Jinrui;
Kudron, Michelle M;
Victorsen, Alec;
Gao, Jiahao;
Ammouri, Haneen N;
Navarro, Fabio C P;
Gevirtzman, Louis;
Waterston, Robert H;
White, Kevin P;
Reinke, Valerie;
Gerstein, Mark

Publication type:

Article

Genome-wide integration site detection using Cas9 enriched amplification-free long-range sequencing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e16, doi. 10.1093/nar/gkaa1152

By:

van Haasteren, Joost;
Munis, Altar M;
Gill, Deborah R;
Hyde, Stephen C

Publication type:

Article

cola: an R/Bioconductor package for consensus partitioning through a general framework.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e15, doi. 10.1093/nar/gkaa1146

By:

Gu, Zuguang;
Schlesner, Matthias;
Hübschmann, Daniel

Publication type:

Article

Parallel monitoring of RNA abundance, localization and compactness with correlative single molecule FISH on LR White embedded samples.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e14, doi. 10.1093/nar/gkaa1142

By:

Kramer, Susanne;
Meyer-Natus, Elisabeth;
Stigloher, Christian;
Thoma, Hanna;
Schnaufer, Achim;
Engstler, Markus

Publication type:

Article

UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. e13, doi. 10.1093/nar/gkaa1138

By:

Chawla, Smriti;
Samydurai, Sudhagar;
Kong, Say Li;
Wu, Zhengwei;
Wang, Zhenxun;
TAM, Wai Leong;
Sengupta, Debarka;
Kumar, Vibhor

Publication type:

Article

The ATR-WEE1 kinase module inhibits the MAC complex to regulate replication stress response.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 3, p. 1411, doi. 10.1093/nar/gkaa1082

By:

Wang, Lili;
Zhan, Li;
Zhao, Yan;
Huang, Yongchi;
Wu, Chong;
Pan, Ting;
Qin, Qi;
Xu, Yiren;
Deng, Zhiping;
Li, Jing;
Hu, Honghong;
Xue, Shaowu;
Yan, Shunping

Publication type:

Article