Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 21

Results: 49

Revealing A-T and G-C Hoogsteen base pairs in stressed protein-bound duplex DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12540, doi. 10.1093/nar/gkab936

By:

Shi, Honglue;
Kimsey, Isaac J;
Gu, Stephanie;
Liu, Hsuan-Fu;
Pham, Uyen;
Schumacher, Maria A;
Al-Hashimi, Hashim M

Publication type:

Article

Cisplatin fastens chromatin irreversibly even at a high chloride concentration.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12035, doi. 10.1093/nar/gkab922

By:

Moon, Hyeon-Min;
Park, Jin-Sung;
Lee, Il-Buem;
Kang, Young-Im;
Jung, Hae Jun;
An, Dongju;
Shin, Yumi;
Kim, Min Ji;
Kim, Hugh I;
Song, Ji-Joon;
Kim, Jaehoon;
Lee, Nam-Kyung;
Hong, Seok-Cheol

Publication type:

Article

hyperthermophilic archaeon Thermococcus kodakarensis is resistant to pervasive negative supercoiling activity of DNA gyrase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12332, doi. 10.1093/nar/gkab869

By:

Villain, Paul;
da Cunha, Violette;
Villain, Etienne;
Forterre, Patrick;
Oberto, Jacques;
Catchpole, Ryan;
Basta, Tamara

Publication type:

Article

metaGEM: reconstruction of genome scale metabolic models directly from metagenomes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e126, doi. 10.1093/nar/gkab815

By:

Zorrilla, Francisco;
Buric, Filip;
Patil, Kiran R;
Zelezniak, Aleksej

Publication type:

Article

FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e125, doi. 10.1093/nar/gkab813

By:

Zhao, Linxuan;
Xing, Pengwei;
Polavarapu, Vamsi Krishna;
Zhao, Miao;
Valero-Martínez, Blanca;
Dang, Yonglong;
Maturi, Nagaprathyusha;
Mathot, Lucy;
Neves, Inês;
Yildirim, Irem;
Swartling, Fredrik Johansson;
Sjöblom, Tobias;
Uhrbom, Lene;
Chen, Xingqi

Publication type:

Article

High resolution copy number inference in cancer using short-molecule nanopore sequencing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e124, doi. 10.1093/nar/gkab812

By:

Baslan, Timour;
Kovaka, Sam;
Sedlazeck, Fritz J;
Zhang, Yanming;
Wappel, Robert;
Tian, Sha;
Lowe, Scott W;
Goodwin, Sara;
Schatz, Michael C

Publication type:

Article

Combinatorial assembly platform enabling engineering of genetically stable metabolic pathways in cyanobacteria.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e123, doi. 10.1093/nar/gkab791

By:

Taylor, George M;
Hitchcock, Andrew;
Heap, John T

Publication type:

Article

scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e122, doi. 10.1093/nar/gkab775

By:

Shao, Xin;
Yang, Haihong;
Zhuang, Xiang;
Liao, Jie;
Yang, Penghui;
Cheng, Junyun;
Lu, Xiaoyan;
Chen, Huajun;
Fan, Xiaohui

Publication type:

Article

rapid method to visualize human mitochondrial DNA replication through rotary shadowing and transmission electron microscopy.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. e121, doi. 10.1093/nar/gkab770

By:

Kosar, Martin;
Piccini, Daniele;
Foiani, Marco;
Giannattasio, Michele

Publication type:

Article

Engineering large-scale chromosomal deletions by CRISPR-Cas9.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12007, doi. 10.1093/nar/gkab557

By:

Eleveld, Thomas F;
Bakali, Chaimaa;
Eijk, Paul P;
Stathi, Phylicia;
Vriend, Lianne E;
Poddighe, Pino J;
Ylstra, Bauke

Publication type:

Article

Broken symmetry between RNA enantiomers in a crystal lattice.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12535, doi. 10.1093/nar/gkab480

By:

Kiliszek, Agnieszka;
Błaszczyk, Leszek;
Bejger, Magdalena;
Rypniewski, Wojciech

Publication type:

Article

Correction to 'Structural insights into chromosome attachment to the nuclear envelope by an inner nuclear membrane protein Bqt4 in fission yeast'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12605, doi. 10.1093/nar/gkab1181

By:

Hu, Chunyi;
Inoue, Haruna;
Sun, Wenqi;
Takeshita, Yumiko;
Huang, Yaoguang;
Xu, Ying;
Kanoh, Junko;
Chen, Yong

Publication type:

Article

Correction to 'DNA repair factor XPC is modified by SUMO-1 and ubiquitin following UV irradiation'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12603, doi. 10.1093/nar/gkab1165

By:

Wang, Qi-En;
Zhu, Qianzheng;
Wani, Gulzar;
El-Mahdy, Mohamed A;
Li, Jinyou;
Wani, Altaf A

Publication type:

Article

Correction to 'Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12601, doi. 10.1093/nar/gkab1164

By:

Kolbeck, Pauline J;
Vanderlinden, Willem;
Gemmecker, Gerd;
Gebhardt, Christian;
Lehmann, Martin;
Lak, Aidin;
Nicolaus, Thomas;
Cordes, Thorben;
Lipfert, Jan

Publication type:

Article

Correction to 'Binding of DNA origami to lipids: maximizing yield and switching via strand displacement'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12600, doi. 10.1093/nar/gkab1163

By:

Singh, Jasleen Kaur Daljit;
Darley, Esther;
Ridone, Pietro;
Gaston, James P;
Abbas, Ali;
Wickham, Shelley F J;
Baker, Matthew A B

Publication type:

Article

Retraction of 'Interplay between REST and nucleolin transcription factors: a key mechanism in the overexpression of genes upon increased phosphorylation'.

Published in:: Nucleic Acids Research, 2021, v. 49, n. 21, p. 12606, doi. 10.1093/nar/gkab1151
Publication type:: Article

nuclear and cytoplasmic activities of RNA polymerase III, and an evolving transcriptome for surveillance.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12017, doi. 10.1093/nar/gkab1145

By:

Kessler, Alan C;
Maraia, Richard J

Publication type:

Article

Cellular heterogeneity in DNA alkylation repair increases population genetic plasticity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12320, doi. 10.1093/nar/gkab1143

By:

Vincent, Maxence S;
Uphoff, Stephan

Publication type:

Article

Efficient DNA interrogation of SpCas9 governed by its electrostatic interaction with DNA beyond the PAM and protospacer.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12433, doi. 10.1093/nar/gkab1139

By:

Zhang, Qian;
Chen, Ziting;
Wang, Fangzhu;
Zhang, Siqi;
Chen, Hongyu;
Gu, Xueying;
Wen, Fengcai;
Jin, Jiachuan;
Zhang, Xia;
Huang, Xingxu;
Shen, Bin;
Sun, Bo

Publication type:

Article

Structural basis of cyclic oligoadenylate degradation by ancillary Type III CRISPR-Cas ring nucleases.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12577, doi. 10.1093/nar/gkab1130

By:

Molina, Rafael;
Jensen, Anne Louise Grøn;
Marchena-Hurtado, Javier;
López-Méndez, Blanca;
Stella, Stefano;
Montoya, Guillermo

Publication type:

Article

Structurally constrained phosphonate internucleotide linkage impacts oligonucleotide-enzyme interaction, and modulates siRNA activity and allele specificity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12069, doi. 10.1093/nar/gkab1126

By:

Yamada, Ken;
Hildebrand, Samuel;
Davis, Sarah M;
Miller, Rachael;
Conroy, Faith;
Sapp, Ellen;
Caiazzi, Jillian;
Alterman, Julia F;
Roux, Loic;
Echeverria, Dimas;
Hassler, Matthew R;
Pfister, Edith L;
DiFiglia, Marian;
Aronin, Neil;
Khvorova, Anastasia

Publication type:

Article

Enzymatic deamination of the epigenetic nucleoside N6-methyladenosine regulates gene expression.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12048, doi. 10.1093/nar/gkab1124

By:

Jiang, Zhuoran;
Wang, Chao;
Wu, Zixin;
Chen, Kun;
Yang, Wei;
Deng, Hexiang;
Song, Heng;
Zhou, Xiang

Publication type:

Article

TRF2 promotes dynamic and stepwise looping of POT1 bound telomeric overhang.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12377, doi. 10.1093/nar/gkab1123

By:

Paul, Tapas;
Liou, Wilson;
Cai, Xinyi;
Opresko, Patricia L;
Myong, Sua

Publication type:

Article

BAF155 methylation drives metastasis by hijacking super-enhancers and subverting anti-tumor immunity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12211, doi. 10.1093/nar/gkab1122

By:

Kim, Eui-Jun;
Liu, Peng;
Zhang, Shengjie;
Donahue, Kristine;
Wang, Yidan;
Schehr, Jennifer L;
Wolfe, Serena K;
Dickerson, Amber;
Lu, Li;
Rui, Lixin;
Zhong, Xuehua;
Wisinski, Kari B;
Yu, Min;
Suzuki, Aussie;
Lang, Joshua M;
Ong, Irene M;
Xu, Wei

Publication type:

Article

Nucleosomes enter cells by clathrin- and caveolin-dependent endocytosis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12306, doi. 10.1093/nar/gkab1121

By:

Wang, Huawei;
Shan, Xiajing;
Ren, Mengtian;
Shang, Mengdi;
Zhou, Chuanzheng

Publication type:

Article

Loss of full-length hnRNP R isoform impairs DNA damage response in motoneurons by inhibiting Yb1 recruitment to chromatin.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12284, doi. 10.1093/nar/gkab1120

By:

Ghanawi, Hanaa;
Hennlein, Luisa;
Zare, Abdolhossein;
Bader, Jakob;
Salehi, Saeede;
Hornburg, Daniel;
Ji, Changhe;
Sivadasan, Rajeeve;
Drepper, Carsten;
Meissner, Felix;
Mann, Matthias;
Jablonka, Sibylle;
Briese, Michael;
Sendtner, Michael

Publication type:

Article

Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12591, doi. 10.1093/nar/gkab1119

By:

Lee, Chanseok;
Kim, Young-Joo;
Kim, Kyung Soo;
Lee, Jae Young;
Kim, Do-Nyun

Publication type:

Article

Master lineage transcription factors anchor trans mega transcriptional complexes at highly accessible enhancer sites to promote long-range chromatin clustering and transcription of distal target genes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12196, doi. 10.1093/nar/gkab1105

By:

White, Shannon M;
Snyder, Michael P;
Yi, Chunling

Publication type:

Article

Cyclophilin acts as a ribosome biogenesis factor by chaperoning the ribosomal protein (PlRPS15) in filamentous fungi.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12358, doi. 10.1093/nar/gkab1102

By:

Mo, Chenmi;
Xie, Chong;
Wang, Gaofeng;
Tian, Tian;
Liu, Juan;
Zhu, Chunxiao;
Xiao, Xueqiong;
Xiao, Yannong

Publication type:

Article

Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12178, doi. 10.1093/nar/gkab1100

By:

Glaser, Laura V;
Steiger, Mara;
Fuchs, Alisa;
van Bömmel, Alena;
Einfeldt, Edda;
Chung, Ho-Ryun;
Vingron, Martin;
Meijsing, Sebastiaan H

Publication type:

Article

pioneer round of translation ensures proper targeting of ER and mitochondrial proteins.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12517, doi. 10.1093/nar/gkab1098

By:

Park, Joori;
Chang, Jeeyoon;
Hwang, Hyun Jung;
Jeong, Kwon;
Lee, Hyuk-Joon;
Ha, Hongseok;
Park, Yeonkyoung;
Lim, Chunghun;
Woo, Jae-Sung;
Kim, Yoon Ki

Publication type:

Article

7′,5′-alpha-bicyclo-DNA: new chemistry for oligonucleotide exon splicing modulation therapy.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12089, doi. 10.1093/nar/gkab1097

By:

Evéquoz, Damien;
Verhaart, Ingrid E C;
van de Vijver, Davy;
Renner, Wolfgang;
Aartsma-Rus, Annemieke;
Leumann, Christian J

Publication type:

Article

Inhibition of SARS-CoV-2 coronavirus proliferation by designer antisense-circRNAs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12502, doi. 10.1093/nar/gkab1096

By:

Pfafenrot, Christina;
Schneider, Tim;
Müller, Christin;
Hung, Lee-Hsueh;
Schreiner, Silke;
Ziebuhr, John;
Bindereif, Albrecht

Publication type:

Article

G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12486, doi. 10.1093/nar/gkab1095

By:

Dumetz, Franck;
Chow, Eugene Yui-Ching;
Harris, Lynne M;
Liew, Shiau Wei;
Jensen, Anders;
Umar, Mubarak I;
Chung, Betty;
Chan, Ting Fung;
Merrick, Catherine J;
Kwok, Chun Kit

Publication type:

Article

chromatin remodeler RSF1 coordinates epigenetic marks for transcriptional repression and DSB repair.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12268, doi. 10.1093/nar/gkab1093

By:

Min, Sunwoo;
Lee, Ho-Soo;
Ji, Jae-Hoon;
Heo, Yungyeong;
Kim, Yonghyeon;
Chae, Sunyoung;
Choi, Yong Won;
Kang, Ho-Chul;
Nakanishi, Makoto;
Cho, Hyeseong

Publication type:

Article

Discovery of highly reactive self-splicing group II introns within the mitochondrial genomes of human pathogenic fungi.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12422, doi. 10.1093/nar/gkab1077

By:

Liu, Tianshuo;
Pyle, Anna M

Publication type:

Article

Probing the stability of the SpCas9–DNA complex after cleavage.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12411, doi. 10.1093/nar/gkab1072

By:

Aldag, Pierre;
Welzel, Fabian;
Jakob, Leonhard;
Schmidbauer, Andreas;
Rutkauskas, Marius;
Fettes, Fergus;
Grohmann, Dina;
Seidel, Ralf

Publication type:

Article

Relaxed 3D genome conformation facilitates the pluripotent to totipotent-like state transition in embryonic stem cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12167, doi. 10.1093/nar/gkab1069

By:

Zhu, Yezhang;
Yu, Jiali;
Gu, Jiahui;
Xue, Chaoran;
Zhang, Long;
Chen, Jiekai;
Shen, Li

Publication type:

Article

Chromatin loading of MCM hexamers is associated with di-/tri-methylation of histone H4K20 toward S phase entry.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12152, doi. 10.1093/nar/gkab1068

By:

Hayashi-Takanaka, Yoko;
Hayashi, Yuichiro;
Hirano, Yasuhiro;
Miyawaki-Kuwakado, Atsuko;
Ohkawa, Yasuyuki;
Obuse, Chikashi;
Kimura, Hiroshi;
Haraguchi, Tokuko;
Hiraoka, Yasushi

Publication type:

Article

Evolutionary repair reveals an unexpected role of the tRNA modification m1G37 in aminoacylation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12467, doi. 10.1093/nar/gkab1067

By:

Clifton, Ben E;
Fariz, Muhammad A;
Uechi, Gen-Ichiro;
Laurino, Paola

Publication type:

Article

Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12136, doi. 10.1093/nar/gkab1044

By:

Popova, Liudmila V;
Nagarajan, Prabakaran;
Lovejoy, Callie M;
Sunkel, Benjamin D;
Gardner, Miranda L;
Wang, Meng;
Freitas, Michael A;
Stanton, Benjamin Z;
Parthun, Mark R

Publication type:

Article

In vivo architecture of the telomerase RNA catalytic core in Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12445, doi. 10.1093/nar/gkab1042

By:

Dey, Abhishek;
Monroy-Eklund, Anais;
Klotz, Kaitlin;
Saha, Arpita;
Davis, Justin;
Li, Bibo;
Laederach, Alain;
Chakrabarti, Kausik

Publication type:

Article

ImmReg: the regulon atlas of immune-related pathways across cancer types.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12106, doi. 10.1093/nar/gkab1041

By:

Jiang, Tiantongfei;
Zhou, Weiwei;
Chang, Zhenghong;
Zou, Haozhe;
Bai, Jing;
Sun, Qisen;
Pan, Tao;
Xu, Juan;
Li, Yongsheng;
Li, Xia

Publication type:

Article

Functional asymmetry and chemical reactivity of CsoR family persulfide sensors.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12556, doi. 10.1093/nar/gkab1040

By:

Fakhoury, Joseph N;
Zhang, Yifan;
Edmonds, Katherine A;
Bringas, Mauro;
Luebke, Justin L;
Gonzalez-Gutierrez, Giovanni;
Capdevila, Daiana A;
Giedroc, David P

Publication type:

Article

new RNA–DNA interaction required for integration of group II intron retrotransposons into DNA targets.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12394, doi. 10.1093/nar/gkab1031

By:

Monachello, Dario;
Lauraine, Marc;
Gillot, Sandra;
Michel, François;
Costa, Maria

Publication type:

Article

Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12252, doi. 10.1093/nar/gkab1022

By:

An, Jiao;
Yin, Mengdie;
Yin, Jiayong;
Wu, Sizhong;
Selby, Christopher P;
Yang, Yanyan;
Sancar, Aziz;
Xu, Guo-Liang;
Qian, Maoxiang;
Hu, Jinchuan

Publication type:

Article

human telomeric proteome during telomere replication.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12119, doi. 10.1093/nar/gkab1015

By:

Lin, Chih-Yi Gabriela;
Näger, Anna Christina;
Lunardi, Thomas;
Vančevska, Aleksandra;
Lossaint, Gérald;
Lingner, Joachim

Publication type:

Article

TRF2-mediated ORC recruitment underlies telomere stability upon DNA replication stress.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12234, doi. 10.1093/nar/gkab1004

By:

Higa, Mitsunori;
Matsuda, Yukihiro;
Fujii, Jumpei;
Sugimoto, Nozomi;
Yoshida, Kazumasa;
Fujita, Masatoshi

Publication type:

Article

Fast interaction dynamics of G-quadruplex and RGG-rich peptides unveiled in zero-mode waveguides.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 21, p. 12348, doi. 10.1093/nar/gkab1002

By:

Patra, Satyajit;
Claude, Jean-Benoît;
Naubron, Jean-Valère;
Wenger, Jérome

Publication type:

Article