Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 18

Results: 51

Correction to 'DrugCombDB: a comprehensive database of drug combinations toward the discovery of combinatorial therapy'.

Published in:

2021

By:

Liu, Hui;
Zhang, Wenhao;
Zou, Bo;
Wang, Jinxian;
Deng, Yuanyuan;
Deng, Lei

Publication type:

Correction Notice

Correction to 'Structure of the bacteriophage PhiKZ non-virion RNA polymerase'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10806, doi. 10.1093/nar/gkab846

By:

de Martín Garrido, Natàlia;
Orekhova, Mariia;
Lai Wan Loong, Yuen Ting Emilie;
Litvinova, Anna;
Ramlaul, Kailash;
Artamonova, Tatyana;
Melnikov, Alexei S;
Serdobintsev, Pavel;
Aylett, Christopher H S;
Yakunina, Maria

Publication type:

Article

Fusarium BP1 is a reader of H3K27 methylation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10448, doi. 10.1093/nar/gkab844

By:

Tang, Guangfei;
Yuan, Jianlong;
Wang, Jing;
Zhang, Yi-Zhe;
Xie, Si-Si;
Wang, Hongkai;
Tao, Zeng;
Liu, Huiquan;
Kistler, H Corby;
Zhao, Youfu;
Duan, Cheng-Guo;
Liu, Wende;
Ma, Zhonghua;
Chen, Yun

Publication type:

Article

Click and Cut: a click chemistry approach to developing oxidative DNA damaging agents.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10289, doi. 10.1093/nar/gkab817

By:

McStay, Natasha;
Slator, Creina;
Singh, Vandana;
Gibney, Alex;
Westerlund, Fredrik;
Kellett, Andrew

Publication type:

Article

vast pool of lineage-specific microproteins encoded by long non-coding RNAs in plants.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10328, doi. 10.1093/nar/gkab816

By:

Fesenko, Igor;
Shabalina, Svetlana A;
Mamaeva, Anna;
Knyazev, Andrey;
Glushkevich, Anna;
Lyapina, Irina;
Ziganshin, Rustam;
Kovalchuk, Sergey;
Kharlampieva, Daria;
Lazarev, Vassili;
Taliansky, Michael;
Koonin, Eugene V

Publication type:

Article

Predict long-range enhancer regulation based on protein–protein interactions between transcription factors.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10347, doi. 10.1093/nar/gkab841

By:

Wang, Hao;
Huang, Binbin;
Wang, Jianrong

Publication type:

Article

Genomic impact of stress-induced transposable element mobility in Arabidopsis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10431, doi. 10.1093/nar/gkab828

By:

Roquis, David;
Robertson, Marta;
Yu, Liang;
Thieme, Michael;
Julkowska, Magdalena;
Bucher, Etienne

Publication type:

Article

Divergent degeneration of creA antitoxin genes from minimal CRISPRs and the convergent strategy of tRNA-sequestering CreT toxins.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10677, doi. 10.1093/nar/gkab821

By:

Cheng, Feiyue;
Wang, Rui;
Yu, Haiying;
Liu, Chao;
Yang, Jun;
Xiang, Hua;
Li, Ming

Publication type:

Article

function of twister ribozyme variants in non-LTR retrotransposition in Schistosoma mansoni.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10573, doi. 10.1093/nar/gkab818

By:

Liu, Getong;
Jiang, Hengyi;
Sun, Wenxia;
Zhang, Jun;
Chen, Dongrong;
Murchie, Alastair I H

Publication type:

Article

Correction to 'DNA polymerase gamma mutations that impair holoenzyme stability cause catalytic subunit depletion'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10803, doi. 10.1093/nar/gkab837

By:

Silva-Pinheiro, Pedro;
Pardo-Hernández, Carlos;
Reyes, Aurelio;
Tilokani, Lisa;
Mishra, Anup;
Cerutti, Raffaele;
Li, Shuaifeng;
Rozsivalova, Dieu-Hien;
Valenzuela, Sebastian;
Dogan, Sukru A;
Peter, Bradley;
Fernández-Silva, Patricio;
Trifunovic, Aleksandra;
Prudent, Julien;
Minczuk, Michal;
Bindoff, Laurence;
Macao, Bertil;
Zeviani, Massimo;
Falkenberg, Maria;
Viscomi, Carlo

Publication type:

Article

Correction to 'The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets'.

Published in:

2021

By:

Szklarczyk, Damian;
Gable, Annika L;
Nastou, Katerina C;
Lyon, David;
Kirsch, Rebecca;
Pyysalo, Sampo;
Doncheva, Nadezhda T;
Legeay, Marc;
Fang, Tao;
Bork, Peer;
Jensen, Lars J;
von Mering, Christian

Publication type:

Correction Notice

Toward a mechanistic understanding of DNA binding by forkhead transcription factors and its perturbation by pathogenic mutations.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10235, doi. 10.1093/nar/gkab807

By:

Dai, Shuyan;
Qu, Linzhi;
Li, Jun;
Chen, Yongheng

Publication type:

Article

Correction to 'Cis regulation within a cluster of viral microRNAs'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10804, doi. 10.1093/nar/gkab806

By:

Vilimova, Monika;
Contrant, Maud;
Randrianjafy, Ramy;
Dumas, Philippe;
Elbasani, Endrit;
Ojala, Päivi M;
Pfeffer, Sébastien;
Fender, Aurélie

Publication type:

Article

CRL4DTL E3 ligase induces degradation of the DNA replication initiation factor TICRR/TRESLIN specifically during S phase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10507, doi. 10.1093/nar/gkab805

By:

Wittig, Kimberlie A;
Sansam, Courtney G;
Noble, Tyler D;
Goins, Duane;
Sansam, Christopher L

Publication type:

Article

β-CASP proteins removing RNA polymerase from DNA: when a torpedo is needed to shoot a sitting duck.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10221, doi. 10.1093/nar/gkab803

By:

Wiedermannová, Jana;
Krásný, Libor

Publication type:

Article

Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polymerases.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10542, doi. 10.1093/nar/gkab801

By:

Xu, Penghao;
Storici, Francesca

Publication type:

Article

fate of notch-1 transcript is linked to cell cycle dynamics by activity of a natural antisense transcript.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10419, doi. 10.1093/nar/gkab800

By:

Vujovic, Filip;
Rezaei-Lotfi, Saba;
Hunter, Neil;
Farahani, Ramin M

Publication type:

Article

Integrative analysis of epigenetics data identifies gene-specific regulatory elements.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10397, doi. 10.1093/nar/gkab798

By:

Schmidt, Florian;
Marx, Alexander;
Baumgarten, Nina;
Hebel, Marie;
Wegner, Martin;
Kaulich, Manuel;
Leisegang, Matthias S;
Brandes, Ralf P;
Göke, Jonathan;
Vreeken, Jilles;
Schulz, Marcel H

Publication type:

Article

Dual targeting of higher-order DNA structures by azacryptands induces DNA junction-mediated DNA damage in cancer cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10275, doi. 10.1093/nar/gkab796

By:

Zell, Joanna;
Duskova, Katerina;
Chouh, Leïla;
Bossaert, Madeleine;
Chéron, Nicolas;
Granzhan, Anton;
Britton, Sébastien;
Monchaud, David

Publication type:

Article

Novel anti-repression mechanism of H-NS proteins by a phage protein.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10770, doi. 10.1093/nar/gkab793

By:

Bdira, Fredj Ben;
Erkelens, Amanda M;
Qin, Liang;
Volkov, Alexander N;
Lippa, Andrew M;
Bowring, Nicholas;
Boyle, Aimee L;
Ubbink, Marcellus;
Dove, Simon L;
Dame, Remus T

Publication type:

Article

Optimized nickase- and nuclease-based prime editing in human and mouse cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10785, doi. 10.1093/nar/gkab792

By:

Adikusuma, Fatwa;
Lushington, Caleb;
Arudkumar, Jayshen;
Godahewa, Gelshan I;
Chey, Yu C J;
Gierus, Luke;
Piltz, Sandra;
Geiger, Ashleigh;
Jain, Yatish;
Reti, Daniel;
Wilson, Laurence O W;
Bauer, Denis C;
Thomas, Paul Q

Publication type:

Article

Structural basis of transcription activation by the global regulator Spx.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10756, doi. 10.1093/nar/gkab790

By:

Shi, Jing;
Li, Fangfang;
Wen, Aijia;
Yu, Libing;
Wang, Lu;
Wang, Fulin;
Jin, Yuanling;
Jin, Sha;
Feng, Yu;
Lin, Wei

Publication type:

Article

Functional correction of CFTR mutations in human airway epithelial cells using adenine base editors.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10558, doi. 10.1093/nar/gkab788

By:

Krishnamurthy, Sateesh;
Traore, Soumba;
Cooney, Ashley L;
Brommel, Christian M;
Kulhankova, Katarina;
Sinn, Patrick L;
Newby, Gregory A;
Liu, David R;
McCray, Paul B

Publication type:

Article

Modulation of alternative splicing during early infection of human primary B lymphocytes with Epstein-Barr virus (EBV): a novel function for the viral EBNA-LP protein.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10657, doi. 10.1093/nar/gkab787

By:

Manet, Evelyne;
Polvèche, Hélène;
Mure, Fabrice;
Mrozek-Gorska, Paulina;
Roisné-Hamelin, Florian;
Hammerschmidt, Wolfgang;
Auboeuf, Didier;
Gruffat, Henri

Publication type:

Article

Structure of an inactive RNA polymerase II dimer.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10747, doi. 10.1093/nar/gkab783

By:

Aibara, Shintaro;
Dienemann, Christian;
Cramer, Patrick

Publication type:

Article

small regulatory RNA alters Staphylococcus aureus virulence by titrating RNAIII activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10644, doi. 10.1093/nar/gkab782

By:

Le Huyen, Kim Boi;
Gonzalez, Cintia Daniela;
Pascreau, Gaëtan;
Bordeau, Valérie;
Cattoir, Vincent;
Liu, Wenfeng;
Bouloc, Philippe;
Felden, Brice;
Chabelskaya, Svetlana

Publication type:

Article

Correction to 'Improved nearest-neighbor parameters for the stability of RNA/DNA hybrids under a physiological condition'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10796, doi. 10.1093/nar/gkab780

By:

Banerjee, Dipanwita;
Tateishi-Karimata, Hisae;
Ohyama, Tatsuya;
Ghosh, Saptarshi;
Endoh, Tamaki;
Takahashi, Shuntaro;
Sugimoto, Naoki

Publication type:

Article

Replication-dependent cytotoxicity and Spartan-mediated repair of trapped PARP1–DNA complexes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10493, doi. 10.1093/nar/gkab777

By:

Saha, Liton Kumar;
Murai, Yasuhisa;
Saha, Sourav;
Jo, Ukhyun;
Tsuda, Masataka;
Takeda, Shunichi;
Pommier, Yves

Publication type:

Article

ZFC3H1 prevents RNA trafficking into nuclear speckles through condensation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10630, doi. 10.1093/nar/gkab774

By:

Wang, Yimin;
Fan, Jing;
Wang, Jianshu;
Zhu, Yi;
Xu, Lin;
Tong, Deng;
Cheng, Hong

Publication type:

Article

Comprehensive characterization of somatic variants associated with intronic polyadenylation in human cancers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10369, doi. 10.1093/nar/gkab772

By:

Zhao, Zhaozhao;
Xu, Qiushi;
Wei, Ran;
Huang, Leihuan;
Wang, Weixu;
Wei, Gang;
Ni, Ting

Publication type:

Article

TARG1 protects against toxic DNA ADP-ribosylation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10477, doi. 10.1093/nar/gkab771

By:

Tromans-Coia, Callum;
Sanchi, Andrea;
Moeller, Giuliana K;
Timinszky, Gyula;
Lopes, Massimo;
Ahel, Ivan

Publication type:

Article

Identification of host tRNAs preferentially recognized by the Plasmodium surface protein tRip.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10618, doi. 10.1093/nar/gkab769

By:

Cela, Marta;
Théobald-Dietrich, Anne;
Rudinger-Thirion, Joëlle;
Wolff, Philippe;
Geslain, Renaud;
Frugier, Magali

Publication type:

Article

Multiple hPOT1–TPP1 cooperatively unfold contiguous telomeric G-quadruplexes proceeding from 3′ toward 5′, a feature due to a 3′-end binding preference and to structuring of telomeric DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10735, doi. 10.1093/nar/gkab768

By:

Chatain, Jean;
Hatem, Georges;
Delagoutte, Emmanuelle;
Riou, Jean-François;
Alberti, Patrizia;
Saintomé, Carole

Publication type:

Article

Fission yeast Stn1 maintains stability of repetitive DNA at subtelomere and ribosomal DNA regions.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10465, doi. 10.1093/nar/gkab767

By:

Yamamoto, Io;
Nakaoka, Hidenori;
Takikawa, Masahiro;
Tashiro, Sanki;
Kanoh, Junko;
Miyoshi, Tomoichiro;
Ishikawa, Fuyuki

Publication type:

Article

Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10309, doi. 10.1093/nar/gkab765

By:

Dibaeinia, Payam;
Sinha, Saurabh

Publication type:

Article

Theoretical basis for stabilizing messenger RNA through secondary structure design.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10604, doi. 10.1093/nar/gkab764

By:

Wayment-Steele, Hannah K;
Kim, Do Soon;
Choe, Christian A;
Nicol, John J;
Wellington-Oguri, Roger;
Watkins, Andrew M;
Parra Sperberg, R Andres;
Huang, Po-Ssu;
Participants, Eterna;
Das, Rhiju

Publication type:

Article

Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10265, doi. 10.1093/nar/gkab762

By:

Jun, Hyungmin;
Wang, Xiao;
Parsons, Molly F;
Bricker, William P;
John, Torsten;
Li, Shanshan;
Jackson, Steve;
Chiu, Wah;
Bathe, Mark

Publication type:

Article

Designed architectural proteins that tune DNA looping in bacteria.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10382, doi. 10.1093/nar/gkab759

By:

Tse, David H;
Becker, Nicole A;
Young, Robert T;
Olson, Wilma K;
Peters, Justin P;
Schwab, Tanya L;
Clark, Karl J;
Maher, L James

Publication type:

Article

Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10717, doi. 10.1093/nar/gkab755

By:

Fu, Wenqiang;
Jing, Haitao;
Xu, Xiaojuan;
Xu, Suping;
Wang, Tao;
Hu, Wenxuan;
Li, Huihui;
Zhang, Na

Publication type:

Article

new role for SR1 from Bacillus subtilis: regulation of sporulation by inhibition of kinA translation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10589, doi. 10.1093/nar/gkab747

By:

Ul Haq, Inam;
Brantl, Sabine;
Müller, Peter

Publication type:

Article

Structural basis for activation of Swi2/Snf2 ATPase RapA by RNA polymerase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10707, doi. 10.1093/nar/gkab744

By:

Shi, Wei;
Zhou, Wei;
Chen, Ming;
Yang, Yang;
Hu, Yangbo;
Liu, Bin

Publication type:

Article

effect of hairpin loop on the structure and gene expression activity of the long-loop G-quadruplex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10689, doi. 10.1093/nar/gkab739

By:

Ravichandran, Subramaniyam;
Razzaq, Maria;
Parveen, Nazia;
Ghosh, Ambarnil;
Kim, Kyeong Kyu

Publication type:

Article

Small circular interfering RNAs (sciRNAs) as a potent therapeutic platform for gene-silencing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10250, doi. 10.1093/nar/gkab724

By:

Jahns, Hartmut;
Degaonkar, Rohan;
Podbevsek, Peter;
Gupta, Swati;
Bisbe, Anna;
Aluri, Krishna;
Szeto, John;
Kumar, Pawan;
LeBlanc, Sarah;
Racie, Tim;
Brown, Christopher R;
Castoreno, Adam;
Guenther, Dale C;
Jadhav, Vasant;
Maier, Martin A;
Plavec, Janez;
Egli, Martin;
Manoharan, Muthiah;
Zlatev, Ivan

Publication type:

Article

TSMiner: a novel framework for generating time-specific gene regulatory networks from time-series expression profiles.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. e108, doi. 10.1093/nar/gkab629

By:

Han, Mingfei;
Liu, Xian;
Zhang, Wen;
Wang, Mengnan;
Bu, Wenjing;
Chang, Cheng;
Yu, Miao;
Li, Yingxing;
Tian, Chunyan;
Yang, Xiaoming;
Zhu, Yunping;
He, Fuchu

Publication type:

Article

Visualization and characterization of RNA–protein interactions in living cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. e107, doi. 10.1093/nar/gkab614

By:

Duan, Ningjun;
Arroyo, Maria;
Deng, Wen;
Cardoso, M Cristina;
Leonhardt, Heinrich

Publication type:

Article

capCLIP: a new tool to probe translational control in human cells through capture and identification of the eIF4E–mRNA interactome.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. e105, doi. 10.1093/nar/gkab604

By:

Jensen, Kirk B;
Dredge, B Kate;
Toubia, John;
Jin, Xin;
Iadevaia, Valentina;
Goodall, Gregory J;
Proud, Christopher G

Publication type:

Article

Aberration-corrected ultrafine analysis of miRNA reads at single-base resolution: a k-mer lattice approach.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. e106, doi. 10.1093/nar/gkab610

By:

Zhang, Xuan;
Ping, Pengyao;
Hutvagner, Gyorgy;
Blumenstein, Michael;
Li, Jinyan

Publication type:

Article

Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. e104, doi. 10.1093/nar/gkab601

By:

Nakajima, Natsu;
Hayashi, Tomoatsu;
Fujiki, Katsunori;
Shirahige, Katsuhiko;
Akiyama, Tetsu;
Akutsu, Tatsuya;
Nakato, Ryuichiro

Publication type:

Article

Single-cell nucleic acid profiling in droplets (SNAPD) enables high-throughput analysis of heterogeneous cell populations.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. e103, doi. 10.1093/nar/gkab577

By:

Hyman, Leland B;
Christopher, Clare R;
Romero, Philip A

Publication type:

Article

Fkh1 Forkhead associated domain promotes ORC binding to a subset of DNA replication origins in budding yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 18, p. 10207, doi. 10.1093/nar/gkab450

By:

Hoggard, Timothy;
Hollatz, Allison J;
Cherney, Rachel E;
Seman, Melissa R;
Fox, Catherine A

Publication type:

Article