Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 15

Results: 48

Correction to 'SIRT3 consolidates heterochromatin and counteracts senescence'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 9004, doi. 10.1093/nar/gkab698

By:

Diao, Zhiqing;
Ji, Qianzhao;
Wu, Zeming;
Zhang, Weiqi;
Cai, Yusheng;
Wang, Zehua;
Hu, Jianli;
Liu, Zunpeng;
Wang, Qiaoran;
Bi, Shijia;
Huang, Daoyuan;
Ji, Zhejun;
Liu, Guang-Hui;
Wang, Si;
Song, Moshi;
Qu, Jing

Publication type:

Article

Global detection of DNA repair outcomes induced by CRISPR–Cas9.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8732, doi. 10.1093/nar/gkab686

By:

Liu, Mengzhu;
Zhang, Weiwei;
Xin, Changchang;
Yin, Jianhang;
Shang, Yafang;
Ai, Chen;
Li, Jiaxin;
Meng, Fei-Long;
Hu, Jiazhi

Publication type:

Article

Cancer cells are highly susceptible to accumulation of templated insertions linked to MMBIR.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8714, doi. 10.1093/nar/gkab685

By:

Osia, Beth;
Alsulaiman, Thamer;
Jackson, Tyler;
Kramara, Juraj;
Oliveira, Suely;
Malkova, Anna

Publication type:

Article

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8535, doi. 10.1093/nar/gkab680

By:

Decourty, Laurence;
Malabat, Christophe;
Frachon, Emmanuel;
Jacquier, Alain;
Saveanu, Cosmin

Publication type:

Article

NMPylation and de-NMPylation of SARS-CoV-2 nsp9 by the NiRAN domain.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8822, doi. 10.1093/nar/gkab677

By:

Wang, Bing;
Svetlov, Dmitri;
Artsimovitch, Irina

Publication type:

Article

Two distinct pathways of RNA polymerase backtracking determine the requirement for the Trigger Loop during RNA hydrolysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8777, doi. 10.1093/nar/gkab675

By:

Mosaei, Hamed;
Zenkin, Nikolay

Publication type:

Article

Molecular basis for bipartite recognition of histone H3 by the PZP domain of PHF14.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8961, doi. 10.1093/nar/gkab670

By:

Zheng, Shuangping;
Bi, Yucong;
Chen, Haining;
Gong, Bo;
Jia, Shunji;
Li, Haitao

Publication type:

Article

An induced-fit de novo initiation mechanism suggested by a pestivirus RNA-dependent RNA polymerase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8811, doi. 10.1093/nar/gkab666

By:

Zhang, Bu-Yu;
Liu, Weichi;
Jia, Hengxia;
Lu, Guoliang;
Gong, Peng

Publication type:

Article

A novel cell-cycle-regulated interaction of the Bloom syndrome helicase BLM with Mcm6 controls replication-linked processes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8699, doi. 10.1093/nar/gkab663

By:

Shastri, Vivek M;
Subramanian, Veena;
Schmidt, Kristina H

Publication type:

Article

Role of a cryptic tRNA gene operon in survival under translational stress.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8757, doi. 10.1093/nar/gkab661

By:

Santamaría-Gómez, Javier;
Rubio, Miguel Ángel;
López-Igual, Rocío;
Romero-Losada, Ana B;
Delgado-Chaves, Fernando M;
Bru-Martínez, Roque;
Romero-Campero, Francisco J;
Herrero, Antonia;
Ibba, Michael;
Ochoa de Alda, Jesús A G;
Luque, Ignacio

Publication type:

Article

A novel mechanism of enhanced transcription activity and fidelity for influenza A viral RNA-dependent RNA polymerase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8796, doi. 10.1093/nar/gkab660

By:

Xu, Xinzhou;
Zhang, Lu;
Chu, Julie Tung Sem;
Wang, Yuqing;
Chin, Alex Wing Hong;
Chong, Tin Hang;
Dai, Zixi;
Poon, Leo Lit Man;
Cheung, Peter Pak-Hang;
Huang, Xuhui

Publication type:

Article

c-kit2 G-quadruplex stabilized via a covalent probe: exploring G-quartet asymmetry.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8947, doi. 10.1093/nar/gkab659

By:

Peterková, Kateřina;
Durník, Ivo;
Marek, Radek;
Plavec, Janez;
Podbevšek, Peter

Publication type:

Article

Testing mechanisms of DNA sliding by architectural DNA-binding proteins: dynamics of single wild-type and mutant protein molecules in vitro and in vivo.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8642, doi. 10.1093/nar/gkab658

By:

Kamagata, Kiyoto;
Itoh, Yuji;
Tan, Cheng;
Mano, Eriko;
Wu, Yining;
Mandali, Sridhar;
Takada, Shoji;
Johnson, Reid C

Publication type:

Article

Wnt target enhancer regulation by a CDX/TCF transcription factor collective and a novel DNA motif.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8625, doi. 10.1093/nar/gkab657

By:

Ramakrishnan, Aravinda-Bharathi;
Chen, Lisheng;
Burby, Peter E;
Cadigan, Ken M

Publication type:

Article

A nanoscale DNA force spectrometer capable of applying tension and compression on biomolecules.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8987, doi. 10.1093/nar/gkab656

By:

Wang, Yuchen;
Le, Jenny V;
Crocker, Kyle;
Darcy, Michael A;
Halley, Patrick D;
Zhao, Dengke;
Andrioff, Nick;
Croy, Cassie;
Poirier, Michael G;
Bundschuh, Ralf;
Castro, Carlos E

Publication type:

Article

Co-transcriptional RNA cleavage by Drosha homolog Pac1 triggers transcription termination in fission yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8610, doi. 10.1093/nar/gkab654

By:

Yague-Sanz, Carlo;
Duval, Maxime;
Larochelle, Marc;
Bachand, François

Publication type:

Article

Nuclear export of plant pararetrovirus mRNAs involves the TREX complex, two viral proteins and the highly structured 5′ leader region.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8900, doi. 10.1093/nar/gkab653

By:

Kubina, Julie;
Geldreich, Angèle;
Gales, Jón Pol;
Baumberger, Nicolas;
Bouton, Clément;
Ryabova, Lyubov A;
Grasser, Klaus D;
Keller, Mario;
Dimitrova, Maria

Publication type:

Article

eIF4G is retained on ribosomes elongating and terminating on short upstream ORFs to control reinitiation in yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8743, doi. 10.1093/nar/gkab652

By:

Mohammad, Mahabub Pasha;
Smirnova, Anna;
Gunišová, Stanislava;
Valášek, Leoš Shivaya

Publication type:

Article

A small-molecule fluorescence probe ANP77 for sensing RNA internal loop of C, U and A/CC motifs and their binding molecules.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8462, doi. 10.1093/nar/gkab650

By:

Das, Bimolendu;
Murata, Asako;
Nakatani, Kazuhiko

Publication type:

Article

The splicing regulator SLU7 is required to preserve DNMT1 protein stability and DNA methylation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8592, doi. 10.1093/nar/gkab649

By:

Recalde, Miriam;
Gárate-Rascón, María;
Elizalde, María;
Azkona, María;
Latasa, M Ujue;
Bárcena-Varela, Marina;
Sangro, Bruno;
Fernández-Barrena, Maite G;
Ávila, Matías A;
Arechederra, María;
Berasain, Carmen

Publication type:

Article

CellCall: integrating paired ligand–receptor and transcription factor activities for cell–cell communication.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8520, doi. 10.1093/nar/gkab638

By:

Zhang, Yang;
Liu, Tianyuan;
Hu, Xuesong;
Wang, Mei;
Wang, Jing;
Zou, Bohao;
Tan, Puwen;
Cui, Tianyu;
Dou, Yiying;
Ning, Lin;
huang, Yan;
Rao, Shuan;
Wang, Dong;
Zhao, Xiaoyang

Publication type:

Article

Cryo-EM structure of the nucleosome core particle containing Giardia lamblia histones.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8934, doi. 10.1093/nar/gkab644

By:

Sato, Shoko;
Takizawa, Yoshimasa;
Hoshikawa, Fumika;
Dacher, Mariko;
Tanaka, Hiroki;
Tachiwana, Hiroaki;
Kujirai, Tomoya;
Iikura, Yukari;
Ho, Cheng-Han;
Adachi, Naruhiko;
Patwal, Indu;
Flaus, Andrew;
Kurumizaka, Hitoshi

Publication type:

Article

TDRD3 promotes DHX9 chromatin recruitment and R-loop resolution.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8573, doi. 10.1093/nar/gkab642

By:

Yuan, Wei;
Al-Hadid, Qais;
Wang, Zhihao;
Shen, Lei;
Cho, Hyejin;
Wu, Xiwei;
Yang, Yanzhong

Publication type:

Article

Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8684, doi. 10.1093/nar/gkab641

By:

Yoshua, Samuel B;
Watson, George D;
Howard, Jamieson A L;
Velasco-Berrelleza, Victor;
Leake, Mark C;
Noy, Agnes

Publication type:

Article

Endogenous piRNA-guided slicing triggers responder and trailer piRNA production from viral RNA in Aedes aegypti mosquitoes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8886, doi. 10.1093/nar/gkab640

By:

Joosten, Joep;
Overheul, Gijs J;
Van Rij, Ronald P;
Miesen, Pascal

Publication type:

Article

Small-molecule compounds boost genome-editing efficiency of cytosine base editor.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8974, doi. 10.1093/nar/gkab645

By:

Zhao, Tianyuan;
Li, Qing;
Zhou, Chenchen;
Lv, Xiujuan;
Liu, Hongyan;
Tu, Tianxiang;
Tang, Na;
Cheng, Yanbo;
Liu, Xiaoyu;
Liu, Changbao;
Zhao, Junzhao;
Song, Zongming;
Wang, Haoyi;
Li, Jinsong;
Gu, Feng

Publication type:

Article

Systematic identification of novel cancer genes through analysis of deep shRNA perturbation screens.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8488, doi. 10.1093/nar/gkab627

By:

Montazeri, Hesam;
Coto-Llerena, Mairene;
Bianco, Gaia;
Zangene, Ehsan;
Taha-Mehlitz, Stephanie;
Paradiso, Viola;
Srivatsa, Sumana;
de Weck, Antoine;
Roma, Guglielmo;
Lanzafame, Manuela;
Bolli, Martin;
Beerenwinkel, Niko;
von Flüe, Markus;
Terracciano, Luigi M;
Piscuoglio, Salvatore;
Ng, Charlotte K Y

Publication type:

Article

RCA2: a scalable supervised clustering algorithm that reduces batch effects in scRNA-seq data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8505, doi. 10.1093/nar/gkab632

By:

Schmidt, Florian;
Ranjan, Bobby;
Lin, Quy Xiao Xuan;
Krishnan, Vaidehi;
Joanito, Ignasius;
Honardoost, Mohammad Amin;
Nawaz, Zahid;
Venkatesh, Prasanna Nori;
Tan, Joanna;
Rayan, Nirmala Arul;
Ong, Sin Tiong;
Prabhakar, Shyam

Publication type:

Article

Correction to 'RPA complexes in Caenorhabditis elegans meiosis; unique roles in replication, meiotic recombination and apoptosis'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 9003, doi. 10.1093/nar/gkab631

By:

Hefel, Adam;
Honda, Masayoshi;
Cronin, Nicholas;
Harrell, Kailey;
Patel, Pooja;
Spies, Maria;
Smolikove, Sarit

Publication type:

Article

Correction to 'Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 9002, doi. 10.1093/nar/gkab630

By:

Gyllborg, Daniel;
Langseth, Christoffer Mattsson;
Qian, Xiaoyan;
Choi, Eunkyoung;
Salas, Sergio Marco;
Hilscher, Markus M;
Lein, Ed S;
Nilsson, Mats

Publication type:

Article

Loss of Cyclin C or CDK8 provides ATR inhibitor resistance by suppressing transcription-associated replication stress.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8665, doi. 10.1093/nar/gkab628

By:

Lloyd, Rebecca L;
Urban, Vaclav;
Muñoz-Martínez, Francisco;
Ayestaran, Iñigo;
Thomas, John C;
de Renty, Christelle;
O'Connor, Mark J;
Forment, Josep V;
Galanty, Yaron;
Jackson, Stephen P

Publication type:

Article

Structure and dynamics of the quaternary hunchback mRNA translation repression complex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8866, doi. 10.1093/nar/gkab635

By:

Macošek, Jakub;
Simon, Bernd;
Linse, Johanna-Barbara;
Jagtap, Pravin Kumar Ankush;
Winter, Sophie L;
Foot, Jaelle;
Lapouge, Karine;
Perez, Kathryn;
Rettel, Mandy;
Ivanović, Miloš T;
Masiewicz, Pawel;
Murciano, Brice;
Savitski, Mikhail M;
Loedige, Inga;
Hub, Jochen S;
Gabel, Frank;
Hennig, Janosch

Publication type:

Article

Reactivation of tumour suppressor in breast cancer by enhancer switching through NamiRNA network.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8556, doi. 10.1093/nar/gkab626

By:

Liang, Ying;
Lu, Qi;
Li, Wei;
Zhang, Dapeng;
Zhang, Fanglin;
Zou, Qingping;
Chen, Lu;
Tong, Ying;
Liu, Mengxing;
Wang, Shaoxuan;
Li, Wenxuan;
Ren, Xiaoguang;
Xu, Peng;
Yang, Zhicong;
Dong, Shihua;
Zhang, Baolong;
Huang, Yanni;
Li, Daqiang;
Wang, Hailin;
Yu, Wenqiang

Publication type:

Article

Correction to 'Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 9000, doi. 10.1093/nar/gkab625

By:

Pasini, Diego;
Malatesta, Martina;
Jung, Hye Ryung;
Walfridsson, Julian;
Willer, Anton;
Olsson, Linda;
Skotte, Julie;
Wutz, Anton;
Porse, Bo;
Jensen, Ole Nørregaard;
Helin, Kristian

Publication type:

Article

VarSAn: associating pathways with a set of genomic variants using network analysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8471, doi. 10.1093/nar/gkab624

By:

Xie, Xiaoman;
Kendzior, Matthew C;
Ge, Xiyu;
Mainzer, Liudmila S;
Sinha, Saurabh

Publication type:

Article

Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8836, doi. 10.1093/nar/gkab619

By:

Charlesworth, Amanda G;
Seroussi, Uri;
Lehrbach, Nicolas J;
Renaud, Mathias S;
Sundby, Adam E;
Molnar, Ruxandra I;
Lao, Robert X;
Willis, Alexandra R;
Woock, Jenna R;
Aber, Matthew J;
Diao, Annette J;
Reinke, Aaron W;
Ruvkun, Gary;
Claycomb, Julie M

Publication type:

Article

Why structure and chain length matter: on the biological significance underlying the structural heterogeneity of poly(ADP-ribose).

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8432, doi. 10.1093/nar/gkab618

By:

Reber, Julia M;
Mangerich, Aswin

Publication type:

Article

DNA G-quadruplex structures: more than simple roadblocks to transcription?

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8419, doi. 10.1093/nar/gkab609

By:

Robinson, Jenna;
Raguseo, Federica;
Nuccio, Sabrina Pia;
Liano, Denise;
Di Antonio, Marco

Publication type:

Article

Structural basis for glucocorticoid receptor recognition of both unmodified and methylated binding sites, precursors of a modern recognition element.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8923, doi. 10.1093/nar/gkab605

By:

Liu, Xu;
Weikum, Emily R;
Tilo, Desiree;
Vinson, Charles;
Ortlund, Eric A

Publication type:

Article

In-depth assessment of the PAM compatibility and editing activities of Cas9 variants.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8785, doi. 10.1093/nar/gkab507

By:

Zhang, Weiwei;
Yin, Jianhang;
Zhang-Ding, Zhengrong;
Xin, Changchang;
Liu, Mengzhu;
Wang, Yuhong;
Ai, Chen;
Hu, Jiazhi

Publication type:

Article

VirusViz: comparative analysis and effective visualization of viral nucleotide and amino acid variants.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. e90, doi. 10.1093/nar/gkab478

By:

Bernasconi, Anna;
Gulino, Andrea;
Alfonsi, Tommaso;
Canakoglu, Arif;
Pinoli, Pietro;
Sandionigi, Anna;
Ceri, Stefano

Publication type:

Article

smORFer: a modular algorithm to detect small ORFs in prokaryotes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. e89, doi. 10.1093/nar/gkab477

By:

Bartholomäus, Alexander;
Kolte, Baban;
Mustafayeva, Ayten;
Goebel, Ingrid;
Fuchs, Stephan;
Benndorf, Dirk;
Engelmann, Susanne;
Ignatova, Zoya

Publication type:

Article

A synthetic RNA-mediated evolution system in yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. e88, doi. 10.1093/nar/gkab472

By:

Jensen, Emil D;
Laloux, Marcos;
Lehka, Beata J;
Pedersen, Lasse E;
Jakočiūnas, Tadas;
Jensen, Michael K;
Keasling, Jay D

Publication type:

Article

Imaging of native transcription and transcriptional dynamics in vivo using a tagged Argonaute protein.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. e86, doi. 10.1093/nar/gkab469

By:

Toudji-Zouaz, Amel;
Bertrand, Vincent;
Barrière, Antoine

Publication type:

Article

A cleavage-based surrogate reporter for the evaluation of CRISPR–Cas9 cleavage efficiency.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. e85, doi. 10.1093/nar/gkab467

By:

Jung, Soo Bin;
Lee, Chae young;
Lee, Kwang-Ho;
Heo, Kyu;
Choi, Si Ho

Publication type:

Article

Grand scale genome manipulation via chromosome swapping in Escherichia coli programmed by three one megabase chromosomes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8407, doi. 10.1093/nar/gkab298

By:

Yoneji, Tatsuya;
Fujita, Hironobu;
Mukai, Takahito;
Su'etsugu, Masayuki

Publication type:

Article

Transcriptome screening followed by integrated physicochemical and structural analyses for investigating RNA-mediated berberine activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. 8449, doi. 10.1093/nar/gkab189

By:

Satpathi, Sagar;
Endoh, Tamaki;
Podbevšek, Peter;
Plavec, Janez;
Sugimoto, Naoki

Publication type:

Article

Dissecting and tuning primer editing by proofreading polymerases.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 15, p. e87, doi. 10.1093/nar/gkab471

By:

Gohl, Daryl M;
Auch, Benjamin;
Certano, Amanda;
LeFrançois, Brice;
Bouevitch, Anne;
Doukhanine, Evgueni;
Fragel, Christina;
Macklaim, Jean;
Hollister, Emily;
Garbe, John;
Beckman, Kenneth B

Publication type:

Article