Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 13

Results: 47

Circular L-RNA aptamer promotes target recognition and controls gene activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7280, doi. 10.1093/nar/gkab593

By:

Ji, Danyang;
Lyu, Kaixin;
Zhao, Haizhou;
Kwok, Chun Kit

Publication type:

Article

The phase separation-dependent FUS interactome reveals nuclear and cytoplasmic function of liquid–liquid phase separation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7713, doi. 10.1093/nar/gkab582

By:

Reber, Stefan;
Jutzi, Daniel;
Lindsay, Helen;
Devoy, Anny;
Mechtersheimer, Jonas;
Levone, Brunno Rocha;
Domanski, Michal;
Bentmann, Eva;
Dormann, Dorothee;
Mühlemann, Oliver;
Barabino, Silvia M L;
Ruepp, Marc-David

Publication type:

Article

Diverse high-affinity DNA aptamers for wild-type and B.1.1.7 SARS-CoV-2 spike proteins from a pre-structured DNA library.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7267, doi. 10.1093/nar/gkab574

By:

Li, Jiuxing;
Zhang, Zijie;
Gu, Jimmy;
Stacey, Hannah D;
Ang, Jann C;
Capretta, Alfredo;
Filipe, Carlos D M;
Mossman, Karen L;
Balion, Cynthia;
Salena, Bruno J;
Yamamura, Deborah;
Soleymani, Leyla;
Miller, Matthew S;
Brennan, John D;
Li, Yingfu

Publication type:

Article

dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. e78, doi. 10.1093/nar/gkab356

By:

Etzion-Fuchs, Anat;
Todd, David A;
Singh, Mona

Publication type:

Article

PARP1 and CHK1 coordinate PLK1 enzymatic activity during the DNA damage response to promote homologous recombination-mediated repair.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7554, doi. 10.1093/nar/gkab584

By:

Peng, Bin;
Shi, Ruifeng;
Bian, Jing;
Li, Yuwei;
Wang, Peipei;
Wang, Hailong;
Liao, Ji;
Zhu, Wei-Guo;
Xu, Xingzhi

Publication type:

Article

A type III-A CRISPR–Cas system mediates co-transcriptional DNA cleavage at the transcriptional bubbles in close proximity to active effectors.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7628, doi. 10.1093/nar/gkab590

By:

Lin, Jinzhong;
Shen, Yulong;
Ni, Jinfeng;
She, Qunxin

Publication type:

Article

Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stress.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7437, doi. 10.1093/nar/gkab575

By:

Coronel, Luis;
Riege, Konstantin;
Schwab, Katjana;
Förste, Silke;
Häckes, David;
Semerau, Lena;
Bernhart, Stephan H;
Siebert, Reiner;
Hoffmann, Steve;
Fischer, Martin

Publication type:

Article

SARS-CoV-2 Nsp3 unique domain SUD interacts with guanine quadruplexes and G4-ligands inhibit this interaction.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7695, doi. 10.1093/nar/gkab571

By:

Lavigne, Marc;
Helynck, Olivier;
Rigolet, Pascal;
Boudria-Souilah, Rofia;
Nowakowski, Mireille;
Baron, Bruno;
Brülé, Sébastien;
Hoos, Sylviane;
Raynal, Bertrand;
Guittat, Lionel;
Beauvineau, Claire;
Petres, Stéphane;
Granzhan, Anton;
Guillon, Jean;
Pratviel, Geneviève;
Teulade-Fichou, Marie-Paule;
England, Patrick;
Mergny, Jean-Louis;
Munier-Lehmann, Hélène

Publication type:

Article

Strand-specific effect of Rad26 and TFIIS in rescuing transcriptional arrest by CAG trinucleotide repeat slip-outs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7618, doi. 10.1093/nar/gkab573

By:

Xu, Jun;
Chong, Jenny;
Wang, Dong

Publication type:

Article

Triplex-forming properties and enzymatic incorporation of a base-modified nucleotide capable of duplex DNA recognition at neutral pH.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7256, doi. 10.1093/nar/gkab572

By:

Rusling, David A

Publication type:

Article

Correction to 'A novel 5′-hydroxyl dinucleotide hydrolase activity for the DXO/Rai1 family of enzymes'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7806, doi. 10.1093/nar/gkab570

By:

Doamekpor, Selom K;
Gozdek, Agnieszka;
Kwasnik, Aleksandra;
Kufel, Joanna;
Tong, Liang

Publication type:

Article

NMR structure of the Vibrio vulnificus ribosomal protein S1 domains D3 and D4 provides insights into molecular recognition of single-stranded RNAs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7753, doi. 10.1093/nar/gkab562

By:

Qureshi, Nusrat Shahin;
Matzel, Tobias;
Cetiner, Erhan Can;
Schnieders, Robbin;
Jonker, Hendrik R A;
Schwalbe, Harald;
Fürtig, Boris

Publication type:

Article

The synaptonemal complex central region modulates crossover pathways and feedback control of meiotic double-strand break formation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7537, doi. 10.1093/nar/gkab566

By:

Lee, Min-Su;
Higashide, Mika T;
Choi, Hyungseok;
Li, Ke;
Hong, Soogil;
Lee, Kangseok;
Shinohara, Akira;
Shinohara, Miki;
Kim, Keun P

Publication type:

Article

Pax7 pioneer factor action requires both paired and homeo DNA binding domains.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7424, doi. 10.1093/nar/gkab561

By:

Pelletier, Audrey;
Mayran, Alexandre;
Gouhier, Arthur;
Omichinski, James G;
Balsalobre, Aurelio;
Drouin, Jacques

Publication type:

Article

Evidence for a chromosome origin unwinding system broadly conserved in bacteria.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7525, doi. 10.1093/nar/gkab560

By:

Pelliciari, Simone;
Dong, Mei-Jing;
Gao, Feng;
Murray, Heath

Publication type:

Article

Locus-specific transcription silencing at the FHIT gene suppresses replication stress-induced copy number variant formation and associated replication delay.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7507, doi. 10.1093/nar/gkab559

By:

Park, So Hae;
Bennett-Baker, Pamela;
Ahmed, Samreen;
Arlt, Martin F;
Ljungman, Mats;
Glover, Thomas W;
Wilson, Thomas E

Publication type:

Article

Cell-free genomics reveal intrinsic, cooperative and competitive determinants of chromatin interactions.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7602, doi. 10.1093/nar/gkab558

By:

Eggers, Nikolas;
Becker, Peter B

Publication type:

Article

iTARGEX analysis of yeast deletome reveals novel regulators of transcriptional buffering in S phase and protein turnover.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7318, doi. 10.1093/nar/gkab555

By:

Huang, Jia-Hsin;
Liao, You-Rou;
Lin, Tzu-Chieh;
Tsai, Cheng-Hung;
Lai, Wei-Yun;
Chou, Yang-Kai;
Leu, Jun-Yi;
Tsai, Huai-Kuang;
Kao, Cheng-Fu

Publication type:

Article

Phosphorylation of the HP1β hinge region sequesters KAP1 in heterochromatin and promotes the exit from naïve pluripotency.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7406, doi. 10.1093/nar/gkab548

By:

Qin, Weihua;
Ugur, Enes;
Mulholland, Christopher B;
Bultmann, Sebastian;
Solovei, Irina;
Modic, Miha;
Smets, Martha;
Wierer, Michael;
Forné, Ignasi;
Imhof, Axel;
Cardoso, M Cristina;
Leonhardt, Heinrich

Publication type:

Article

Replication catastrophe induced by cyclic hypoxia leads to increased APOBEC3B activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7492, doi. 10.1093/nar/gkab551

By:

Bader, Samuel B;
Ma, Tiffany S;
Simpson, Charlotte J;
Liang, Jiachen;
Maezono, Sakura Eri B;
Olcina, Monica M;
Buffa, Francesca M;
Hammond, Ester M

Publication type:

Article

Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7298, doi. 10.1093/nar/gkab549

By:

Ichihara, Kazuya;
Matsumoto, Akinobu;
Nishida, Hiroshi;
Kito, Yuki;
Shimizu, Hideyuki;
Shichino, Yuichi;
Iwasaki, Shintaro;
Imami, Koshi;
Ishihama, Yasushi;
Nakayama, Keiichi I

Publication type:

Article

Evolution of plant telomerase RNAs: farther to the past, deeper to the roots.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7680, doi. 10.1093/nar/gkab545

By:

Fajkus, Petr;
Kilar, Agata;
Nelson, Andrew D L;
Holá, Marcela;
Peška, Vratislav;
Goffová, Ivana;
Fojtová, Miloslava;
Zachová, Dagmar;
Fulnečková, Jana;
Fajkus, Jiří

Publication type:

Article

deepBlink: threshold-independent detection and localization of diffraction-limited spots.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7292, doi. 10.1093/nar/gkab546

By:

Eichenberger, Bastian Th;
Zhan, YinXiu;
Rempfler, Markus;
Giorgetti, Luca;
Chao, Jeffrey A

Publication type:

Article

Structure specific DNA recognition by the SLX1–SLX4 endonuclease complex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7740, doi. 10.1093/nar/gkab542

By:

Xu, Xiang;
Wang, Mingzhu;
Sun, Jixue;
Yu, Zhenyu;
Li, Guohong;
Yang, Na;
Xu, Rui-Ming

Publication type:

Article

Genome-wide CRISPR screens reveal cyclin C as synthetic survival target of BRCA2.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7476, doi. 10.1093/nar/gkab540

By:

Tang, Mengfan;
Pei, Guangsheng;
Su, Dan;
Wang, Chao;
Feng, Xu;
Srivastava, Mrinal;
Chen, Zhen;
Zhao, Zhongming;
Chen, Junjie

Publication type:

Article

Structure of the bacteriophage PhiKZ non-virion RNA polymerase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7732, doi. 10.1093/nar/gkab539

By:

deYMartín Garrido, Natàlia;
Orekhova, Mariia;
Lai Wan Loong, Yuen Ting Emilie;
Litvinova, Anna;
Ramlaul, Kailash;
Artamonova, Tatyana;
Melnikov, Alexei S;
Serdobintsev, Pavel;
Aylett, Christopher H S;
Yakunina, Maria

Publication type:

Article

Reduction of lamin B receptor levels by miR-340-5p disrupts chromatin, promotes cell senescence and enhances senolysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7389, doi. 10.1093/nar/gkab538

By:

Herman, Allison B;
Anerillas, Carlos;
Harris, Sophia C;
Munk, Rachel;
Martindale, Jennifer L;
Yang, Xiaoling;
Mazan-Mamczarz, Krystyna;
Zhang, Yongqing;
Heckenbach, Indra J;
Scheibye-Knudsen, Morten;
De, Supriyo;
Sen, Payel;
Abdelmohsen, Kotb;
Gorospe, Myriam

Publication type:

Article

Functional interplay of histone lysine 2-hydroxyisobutyrylation and acetylation in Arabidopsis under dark-induced starvation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7347, doi. 10.1093/nar/gkab536

By:

Zheng, Lanlan;
Li, Chen;
Ma, Xueping;
Zhou, Hanlin;
Liu, Yuan;
Wang, Ping;
Yang, Huilan;
Tamada, Yosuke;
Huang, Ji;
Wang, Chunfei;
Hu, Zhubing;
Wang, Xuening;
Wang, Guodong;
Li, Haihong;
Hu, Juntao;
Liu, Xiaoyun;
Zhou, Chao;
Zhang, Yonghong

Publication type:

Article

Recombination machinery engineering facilitates metabolic engineering of the industrial yeast Pichia pastoris.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7791, doi. 10.1093/nar/gkab535

By:

Cai, Peng;
Duan, Xingpeng;
Wu, Xiaoyan;
Gao, Linhui;
Ye, Min;
Zhou, Yongjin J

Publication type:

Article

Architecture and evolution of subtelomeres in the unicellular green alga Chlamydomonas reinhardtii.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7571, doi. 10.1093/nar/gkab534

By:

Chaux-Jukic, Frédéric;
O'Donnell, Samuel;
Craig, Rory J;
Eberhard, Stephan;
Vallon, Olivier;
Xu, Zhou

Publication type:

Article

Blasticidin S inhibits mammalian translation and enhances production of protein encoded by nonsense mRNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7665, doi. 10.1093/nar/gkab532

By:

Powers, Kyle T;
Stevenson-Jones, Flint;
Yadav, Sathish K N;
Amthor, Beate;
Bufton, Joshua C;
Borucu, Ufuk;
Shen, Dakang;
Becker, Jonas P;
Lavysh, Daria;
Hentze, Matthias W;
Kulozik, Andreas E;
Neu-Yilik, Gabriele;
Schaffitzel, Christiane

Publication type:

Article

DNA methylation by three Type I restriction modification systems of Escherichia coli does not influence gene regulation of the host bacterium.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7375, doi. 10.1093/nar/gkab530

By:

Mehershahi, Kurosh S;
Chen, Swaine L

Publication type:

Article

Impact of the interplay between stemness features, p53 and pol iota on replication pathway choices.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7457, doi. 10.1093/nar/gkab526

By:

Ihle, Michaela;
Biber, Stephanie;
Schroeder, Insa S;
Blattner, Christine;
Deniz, Miriam;
Damia, Giovanna;
Gottifredi, Vanesa;
Wiesmüller, Lisa

Publication type:

Article

Efficient multiplexed gene regulation in Saccharomyces cerevisiae using dCas12a.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7775, doi. 10.1093/nar/gkab529

By:

Ciurkot, Klaudia;
Gorochowski, Thomas E;
Roubos, Johannes A;
Verwaal, René

Publication type:

Article

Epitranscriptomic editing of the RNA N6-methyladenosine modification by dCasRx conjugated methyltransferase and demethylase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7361, doi. 10.1093/nar/gkab517

By:

Xia, Zhen;
Tang, Min;
Ma, Jiayan;
Zhang, Hongyan;
Gimple, Ryan C;
Prager, Briana C;
Tang, Hongzhen;
Sun, Chongran;
Liu, Fuyi;
Lin, Peng;
Mei, Yutang;
Du, Ruoxin;
Rich, Jeremy N;
Xie, Qi

Publication type:

Article

GGGCTA repeats can fold into hairpins poorly unfolded by replication protein A: a possible origin of the length-dependent instability of GGGCTA variant repeats in human telomeres.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7588, doi. 10.1093/nar/gkab518

By:

Chatain, Jean;
Blond, Alain;
Phan, Anh Tuân;
Saintomé, Carole;
Alberti, Patrizia

Publication type:

Article

Assembly of higher-order SMN oligomers is essential for metazoan viability and requires an exposed structural motif present in the YG zipper dimer.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7644, doi. 10.1093/nar/gkab508

By:

Gupta, Kushol;
Wen, Ying;
Ninan, Nisha S;
Raimer, Amanda C;
Sharp, Robert;
Spring, Ashlyn M;
Sarachan, Kathryn L;
Johnson, Meghan C;
Van Duyne, Gregory D;
Matera, A Gregory

Publication type:

Article

rigrag: high-resolution mapping of genic targeting preferences during HIV-1 integration in vitro and in vivo.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7330, doi. 10.1093/nar/gkab514

By:

Bedwell, Gregory J;
Jang, Sooin;
Li, Wen;
Singh, Parmit K;
Engelman, Alan N

Publication type:

Article

A comprehensive review of m<sup>6</sup>A/m<sup>6</sup>Am RNA methyltransferase structures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7239, doi. 10.1093/nar/gkab378

By:

Oerum, Stephanie;
Meynier, Vincent;
Catala, Marjorie;
Tisné, Carine

Publication type:

Article

A small-molecule chemical interface for molecular programs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7765, doi. 10.1093/nar/gkab470

By:

Shenshin, Vasily A;
Lescanne, Camille;
Gines, Guillaume;
Rondelez, Yannick

Publication type:

Article

A self-attention model for inferring cooperativity between regulatory features.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. e77, doi. 10.1093/nar/gkab349

By:

Ullah, Fahad;
Ben-Hur, Asa

Publication type:

Article

Identification and structural analysis of the Schizosaccharomyces pombe SMN complex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7207, doi. 10.1093/nar/gkab158

By:

Veepaschit, Jyotishman;
Viswanathan, Aravindan;
Bordonné, Rémy;
Grimm, Clemens;
Fischer, Utz

Publication type:

Article

The emerging determinants of replication fork stability.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7224, doi. 10.1093/nar/gkab344

By:

Thakar, Tanay;
Moldovan, George-Lucian

Publication type:

Article

Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. e76, doi. 10.1093/nar/gkab291

By:

Cheng, Jingfei;
Siejka-Zielińska, Paulina;
Liu, Yibin;
Chandran, Anandhakumar;
Kriaucionis, Skirmantas;
Song, Chun-Xiao

Publication type:

Article

Argonaute integrated single-tube PCR system enables supersensitive detection of rare mutations.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. e75, doi. 10.1093/nar/gkab274

By:

Liu, Qian;
Guo, Xiang;
Xun, Guanhua;
Li, Zhonglei;
Chong, Yuesheng;
Yang, Litao;
Wang, Hongxia;
Zhang, Fengchun;
Luo, Shukun;
Cui, Li;
Zhao, Pengshu;
Ye, Xingyu;
Xu, Heshan;
Lu, Hui;
Li, Xiao;
Deng, Zixin;
Li, Kai;
Feng, Yan

Publication type:

Article

Measuring nonhomologous end-joining, homologous recombination and alternative end-joining simultaneously at an endogenous locus in any transfectable human cell.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. e74, doi. 10.1093/nar/gkab262

By:

Hussain, Suleman S;
Majumdar, Rahul;
Moore, Grace M;
Narang, Himanshi;
Buechelmaier, Erika S;
Bazil, Maximilian J;
Ravindran, Pavithran T;
Leeman, Jonathan E;
Li, Yi;
Jalan, Manisha;
Anderson, Kyrie S;
Farina, Andrea;
Soni, Rekha;
Mohibullah, Neeman;
Hamzic, Edin;
Rong-Mullins, Xiaoqing;
Sifuentes, Christopher;
Damerla, Rama R;
Viale, Agnes;
Powell, Simon N

Publication type:

Article

5-Fluorouracil blocks quorum-sensing of biofilm-embedded methicillin-resistant Staphylococcus aureus in mice.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. e73, doi. 10.1093/nar/gkab251

By:

Sedlmayer, Ferdinand;
Woischnig, Anne-Kathrin;
Unterreiner, Vincent;
Fuchs, Florian;
Baeschlin, Daniel;
Khanna, Nina;
Fussenegger, Martin

Publication type:

Article