Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 11

Results: 44

Kinetics of heterochiral strand displacement from PNA–DNA heteroduplexes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6114, doi. 10.1093/nar/gkab499

By:

Kundu, Nandini;
Young, Brian E;
Sczepanski, Jonathan T

Publication type:

Article

Editorial: Single-molecule studies of DNA–protein interactions collection 2021.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6005, doi. 10.1093/nar/gkab497

By:

Bianco, Piero R;
Sale, Julian E;
Reyes-Lamothe, Rodrigo

Publication type:

Article

Enhanced delivery of peptide-morpholino oligonucleotides with a small molecule to correct splicing defects in the lung.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6100, doi. 10.1093/nar/gkab488

By:

Dang, Yan;
van Heusden, Catharina;
Nickerson, Veronica;
Chung, Felicity;
Wang, Yang;
Quinney, Nancy L;
Gentzsch, Martina;
Randell, Scott H;
Moulton, Hong M;
Kole, Ryszard;
Ni, Aiguo;
Juliano, Rudolph L;
Kreda, Silvia M

Publication type:

Article

Structural basis of Staphylococcus aureus Cas9 inhibition by AcrIIA14.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6587, doi. 10.1093/nar/gkab487

By:

Liu, Hongnan;
Zhu, Yuwei;
Lu, Zebin;
Huang, Zhiwei

Publication type:

Article

RNA pull-down confocal nanoscanning (RP-CONA) detects quercetin as pri-miR-7/HuR interaction inhibitor that decreases α-synuclein levels.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6456, doi. 10.1093/nar/gkab484

By:

Zhu, Siran;
Choudhury, Nila Roy;
Rooney, Saul;
Pham, Nhan T;
Koszela, Joanna;
Kelly, David;
Spanos, Christos;
Rappsilber, Juri;
Auer, Manfred;
Michlewski, Gracjan

Publication type:

Article

Tissue- and stage-specific landscape of the mouse translatome.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6165, doi. 10.1093/nar/gkab482

By:

Wang, Hongwei;
Wang, Yan;
Yang, Jiaqi;
Zhao, Qian;
Tang, Nan;
Chen, Congying;
Li, Huihui;
Cheng, Chichi;
Xie, Mingzhe;
Yang, Yang;
Xie, Zhi

Publication type:

Article

The role of CTCF in the organization of the centromeric 11p15 imprinted domain interactome.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6315, doi. 10.1093/nar/gkab475

By:

Naveh, Natali S Sobel;
Deegan, Daniel F;
Huhn, Jacklyn;
Traxler, Emily;
Lan, Yemin;
Weksberg, Rosanna;
Ganguly, Arupa;
Engel, Nora;
Kalish, Jennifer M

Publication type:

Article

Gawky modulates MTF-1-mediated transcription activation and metal discrimination.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6296, doi. 10.1093/nar/gkab474

By:

Jia, Ruirui;
Song, Zhenxing;
Lin, Jiamei;
Li, Zhengguo;
Shan, Ge;
Huang, Chuan

Publication type:

Article

The H3K36me2 methyltransferase NSD1 modulates H3K27ac at active enhancers to safeguard gene expression.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6281, doi. 10.1093/nar/gkab473

By:

Fang, Yuan;
Tang, Yin;
Zhang, Yanjun;
Pan, Yixin;
Jia, Junqi;
Sun, Zhongxing;
Zeng, Weiwu;
Chen, Jiaqi;
Yuan, Ying;
Fang, Dong

Publication type:

Article

Study of the DnaB:DciA interplay reveals insights into the primary mode of loading of the bacterial replicative helicase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6569, doi. 10.1093/nar/gkab463

By:

Marsin, Stéphanie;
Adam, Yazid;
Cargemel, Claire;
Andreani, Jessica;
Baconnais, Sonia;
Legrand, Pierre;
Li de la Sierra-Gallay, Ines;
Humbert, Adeline;
Aumont-Nicaise, Magali;
Velours, Christophe;
Ochsenbein, Françoise;
Durand, Dominique;
Le Cam, Eric;
Walbott, Hélène;
Possoz, Christophe;
Quevillon-Cheruel, Sophie;
Ferat, Jean-Luc

Publication type:

Article

LEO1 is a partner for Cockayne syndrome protein B (CSB) in response to transcription-blocking DNA damage.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6331, doi. 10.1093/nar/gkab458

By:

Tiwari, Vinod;
Kulikowicz, Tomasz;
Wilson, David M;
Bohr, Vilhelm A

Publication type:

Article

Optimizing protein V untranslated region sequence in M13 phage for increased production of single-stranded DNA for origami.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6596, doi. 10.1093/nar/gkab455

By:

Lee, Bo-Young;
Lee, Jaewon;
Ahn, Dong June;
Lee, Seungwoo;
Oh, Min-Kyu

Publication type:

Article

Identification of over 200-fold more hairpin ribozymes than previously known in diverse circular RNAs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6375, doi. 10.1093/nar/gkab454

By:

Weinberg, Christina E;
Olzog, V Janett;
Eckert, Iris;
Weinberg, Zasha

Publication type:

Article

Identification of an RNA sponge that controls the RoxS riboregulator of central metabolism in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6399, doi. 10.1093/nar/gkab444

By:

Durand, Sylvain;
Callan-Sidat, Adam;
McKeown, Josie;
Li, Stephen;
Kostova, Gergana;
Hernandez-Fernaud, Juan R;
Alam, Mohammad Tauqeer;
Millard, Andrew;
Allouche, Delphine;
Constantinidou, Chrystala;
Condon, Ciarán;
Denham, Emma L

Publication type:

Article

Structural basis for the dynamics of human methionyl-tRNA synthetase in multi-tRNA synthetase complexes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6549, doi. 10.1093/nar/gkab453

By:

Kim, Dong Kyu;
Lee, Hyun Joo;
Kong, Jiwon;
Cho, Ha Yeon;
Kim, Sunghoon;
Kang, Beom Sik

Publication type:

Article

Sequence-dependent inhibition of cGAS and TLR9 DNA sensing by 2′-O-methyl gapmer oligonucleotides.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6082, doi. 10.1093/nar/gkab451

By:

Valentin, Roxane;
Wong, Christophe;
Alharbi, Arwaf S;
Pradeloux, Solène;
Morros, Makala P;
Lennox, Kim A;
Ellyard, Julia I;
Garcin, Aurélie J;
Ullah, Tomalika R;
Kusuma, Gina D;
Pépin, Geneviève;
Li, Hong-Mei;
Pearson, Jaclyn S;
Ferrand, Jonathan;
Lim, Rebecca;
Veedu, Rakesh N;
Morand, Eric F;
Vinuesa, Carola G;
Behlke, Mark A;
Gantier, Michael P

Publication type:

Article

The conserved sex regulator DMRT1 recruits SOX9 in sexual cell fate reprogramming.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6144, doi. 10.1093/nar/gkab448

By:

Lindeman, Robin E;
Murphy, Mark W;
Agrimson, Kellie S;
Gewiss, Rachel L;
Bardwell, Vivian J;
Gearhart, Micah D;
Zarkower, David

Publication type:

Article

New DNA-hydrolyzing DNAs isolated from an ssDNA library carrying a terminal hybridization stem.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6364, doi. 10.1093/nar/gkab439

By:

Zhang, Canyu;
Li, Qingting;
Xu, Tianbin;
Li, Wei;
He, Yungang;
Gu, Hongzhou

Publication type:

Article

Sequence-dependent recruitment of SRSF1 and SRSF7 to intronless lncRNA NKILA promotes nuclear export via the TREX/TAP pathway.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6420, doi. 10.1093/nar/gkab445

By:

Khan, Misbah;
Hou, Shuai;
Azam, Sikandar;
Lei, Haixin

Publication type:

Article

An essential role of the autophagy activating kinase ULK1 in snRNP biogenesis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6437, doi. 10.1093/nar/gkab452

By:

Schmitz, Katharina;
Cox, Jan;
Esser, Lea Marie;
Voss, Martin;
Sander, Katja;
Löffler, Antje;
Hillebrand, Frank;
Erkelenz, Steffen;
Schaal, Heiner;
Kähne, Thilo;
Klinker, Stefan;
Zhang, Tao;
Nagel-Steger, Luitgard;
Willbold, Dieter;
Seggewiß, Sabine;
Schlütermann, David;
Stork, Björn;
Grimmler, Matthias;
Wesselborg, Sebastian;
Peter, Christoph

Publication type:

Article

Altering transcription factor binding reveals comprehensive transcriptional kinetics of a basic gene.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6249, doi. 10.1093/nar/gkab443

By:

Popp, Achim P;
Hettich, Johannes;
Gebhardt, J Christof M

Publication type:

Article

Cooperative DNA looping by PRC2 complexes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6238, doi. 10.1093/nar/gkab441

By:

Lin, Xingcheng;
Leicher, Rachel;
Liu, Shixin;
Zhang, Bin

Publication type:

Article

Human prefoldin modulates co-transcriptional pre-mRNA splicing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6267, doi. 10.1093/nar/gkab446

By:

Payán-Bravo, Laura;
Fontalva, Sara;
Peñate, Xenia;
Cases, Ildefonso;
Guerrero-Martínez, José Antonio;
Pareja-Sánchez, Yerma;
Odriozola-Gil, Yosu;
Lara, Esther;
Jimeno-González, Silvia;
Suñé, Carles;
Muñoz-Centeno, Mari Cruz;
Reyes, José C;
Chávez, Sebastián

Publication type:

Article

CD44 alternative splicing senses intragenic DNA methylation in tumors via direct and indirect mechanisms.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6213, doi. 10.1093/nar/gkab437

By:

Batsché, Eric;
Yi, Jia;
Mauger, Oriane;
Kornobis, Etienne;
Hopkins, Benjamin;
Hanmer-Lloyd, Charlotte;
Muchardt, Christian

Publication type:

Article

The structure of the mouse ADAT2/ADAT3 complex reveals the molecular basis for mammalian tRNA wobble adenosine-to-inosine deamination.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6529, doi. 10.1093/nar/gkab436

By:

Ramos-Morales, Elizabeth;
Bayam, Efil;
Del-Pozo-Rodríguez, Jordi;
Salinas-Giegé, Thalia;
Marek, Martin;
Tilly, Peggy;
Wolff, Philippe;
Troesch, Edouard;
Ennifar, Eric;
Drouard, Laurence;
Godin, Juliette D;
Romier, Christophe

Publication type:

Article

Structural basis for zinc-induced activation of a zinc uptake transcriptional regulator.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6511, doi. 10.1093/nar/gkab432

By:

Liu, Fenmei;
Su, Zihui;
Chen, Peng;
Tian, Xiaolin;
Wu, Lijie;
Tang, Dong-Jie;
Li, Peifang;
Deng, Haiteng;
Ding, Pengfei;
Fu, Qiang;
Tang, Ji-Liang;
Ming, Zhenhua

Publication type:

Article

Structural basis of successive adenosine modifications by the conserved ribosomal methyltransferase KsgA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6389, doi. 10.1093/nar/gkab430

By:

Stephan, Niklas C;
Ries, Anne B;
Boehringer, Daniel;
Ban, Nenad

Publication type:

Article

Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6489, doi. 10.1093/nar/gkab414

By:

Chen, Ying;
Khazina, Elena;
Izaurralde, Elisa;
Weichenrieder, Oliver

Publication type:

Article

Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6196, doi. 10.1093/nar/gkab413

By:

Nabeel-Shah, Syed;
Garg, Jyoti;
Saettone, Alejandro;
Ashraf, Kanwal;
Lee, Hyunmin;
Wahab, Suzanne;
Ahmed, Nujhat;
Fine, Jacob;
Derynck, Joanna;
Pu, Shuye;
Ponce, Marcelo;
Marcon, Edyta;
Zhang, Zhaolei;
Greenblatt, Jack F;
Pearlman, Ronald E;
Lambert, Jean-Philippe;
Fillingham, Jeffrey

Publication type:

Article

The nuclear periphery is a scaffold for tissue-specific enhancers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6181, doi. 10.1093/nar/gkab392

By:

Smith, Cheryl L;
Poleshko, Andrey;
Epstein, Jonathan A

Publication type:

Article

G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6069, doi. 10.1093/nar/gkab388

By:

Tsukakoshi, Kaori;
Yamagishi, Yasuko;
Kanazashi, Mana;
Nakama, Kenta;
Oshikawa, Daiki;
Savory, Nasa;
Matsugami, Akimasa;
Hayashi, Fumiaki;
Lee, Jinhee;
Saito, Taiki;
Sode, Koji;
Khunathai, Kanjana;
Kuno, Hitoshi;
Ikebukuro, Kazunori

Publication type:

Article

Atomistic basis of force generation, translocation, and coordination in a viral genome packaging motor.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6474, doi. 10.1093/nar/gkab372

By:

Pajak, Joshua;
Dill, Erik;
Reyes-Aldrete, Emilio;
White, Mark A;
Kelch, Brian A;
Jardine, Paul J;
Arya, Gaurav;
Morais, Marc C

Publication type:

Article

Discovery of 17 conserved structural RNAs in fungi.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6128, doi. 10.1093/nar/gkab355

By:

Gao, William;
Jones, Thomas A;
Rivas, Elena

Publication type:

Article

Genome editing in mammalian cells using the CRISPR type I-D nuclease.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6347, doi. 10.1093/nar/gkab348

By:

Osakabe, Keishi;
Wada, Naoki;
Murakami, Emi;
Miyashita, Naoyuki;
Osakabe, Yuriko

Publication type:

Article

The multi-functionality of UHRF1: epigenome maintenance and preservation of genome integrity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6053, doi. 10.1093/nar/gkab293

By:

Mancini, Monica;
Magnani, Elena;
Macchi, Filippo;
Bonapace, Ian Marc

Publication type:

Article

Histone sumoylation and chromatin dynamics.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6043, doi. 10.1093/nar/gkab280

By:

Ryu, Hong-Yeoul;
Hochstrasser, Mark

Publication type:

Article

What makes a type IIA topoisomerase a gyrase or a Topo IV?

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6027, doi. 10.1093/nar/gkab270

By:

Hirsch, Jana;
Klostermeier, Dagmar

Publication type:

Article

Systemic CLIP-seq analysis and game theory approach to model microRNA mode of binding.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e66, doi. 10.1093/nar/gkab198

By:

Serra, Fabrizio;
Bottini, Silvia;
Pratella, David;
Stathopoulou, Maria G;
Sebille, Wanda;
El-Hami, Loubna;
Repetto, Emanuela;
Mauduit, Claire;
Benahmed, Mohamed;
Grandjean, Valerie;
Trabucchi, Michele

Publication type:

Article

An RNA tagging approach for system-wide RNA-binding proteome profiling and dynamics investigation upon transcription inhibition.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e65, doi. 10.1093/nar/gkab156

By:

Zhang, Zheng;
Liu, Tong;
Dong, Hangyan;
Li, Jian;
Sun, Haofan;
Qian, Xiaohong;
Qin, Weijie

Publication type:

Article

aniFOUND: analysing the associated proteome and genomic landscape of the repaired nascent non-replicative chromatin.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e64, doi. 10.1093/nar/gkab144

By:

Stefos, Georgios C;
Szantai, Eszter;
Konstantopoulos, Dimitris;
Samiotaki, Martina;
Fousteri, Maria

Publication type:

Article

An in vitro reconstituted U1 snRNP allows the study of the disordered regions of the particle and the interactions with proteins and ligands.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e63, doi. 10.1093/nar/gkab135

By:

Campagne, Sébastien;
de Vries, Tebbe;
Malard, Florian;
Afanasyev, Pavel;
Dorn, Georg;
Dedic, Emil;
Kohlbrecher, Joachim;
Boehringer, Daniel;
Cléry, Antoine;
Allain, Frédéric H-T

Publication type:

Article

Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e62, doi. 10.1093/nar/gkab132

By:

Bartoschek, Michael D;
Ugur, Enes;
Nguyen, Tuan‐Anh;
Rodschinka, Geraldine;
Wierer, Michael;
Lang, Kathrin;
Bultmann, Sebastian

Publication type:

Article

RNAMotifContrast: a method to discover and visualize RNA structural motif subfamilies.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. e61, doi. 10.1093/nar/gkab131

By:

Islam, Shahidul;
Rahaman, Md Mahfuzur;
Zhang, Shaojie

Publication type:

Article

Activation of the antiviral factor RNase L triggers translation of non-coding mRNA sequences.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 11, p. 6007, doi. 10.1093/nar/gkab036

By:

Karasik, Agnes;
Jones, Grant D;
DePass, Andrew V;
Guydosh, Nicholas R

Publication type:

Article